Wall clock time and date at job start Sat Apr 11 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99524 * 2 1 4 4 N 1.46501 * 109.46783 * 125.00243 * 3 2 1 5 5 C 1.46493 * 120.00242 * 274.64206 * 4 3 2 6 6 C 1.50702 * 109.47318 * 270.00271 * 5 4 3 7 7 H 1.08004 * 119.99791 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00241 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99756 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47026 * 60.00440 * 10 8 6 12 12 H 1.48505 * 109.46850 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47453 * 300.00109 * 10 8 6 14 14 C 1.34783 * 119.99722 * 94.64127 * 4 3 2 15 15 O 1.21588 * 120.00033 * 4.97824 * 14 4 3 16 16 C 1.47537 * 119.99844 * 184.97298 * 14 4 3 17 17 C 1.39721 * 120.18517 * 303.60201 * 16 14 4 18 18 C 1.37887 * 119.89348 * 180.29642 * 17 16 14 19 19 Cl 1.73602 * 119.86621 * 179.70163 * 18 17 16 20 20 C 1.38648 * 120.27403 * 359.68388 * 18 17 16 21 21 C 1.38061 * 120.37500 * 359.97438 * 20 18 17 22 22 N 1.48015 * 119.94759 * 180.02562 * 21 20 18 23 23 O 1.21805 * 120.00224 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00134 * 179.97438 * 22 21 20 25 25 C 1.38692 * 120.09764 * 0.02566 * 21 20 18 26 26 O 1.35679 * 120.13271 * 180.02562 * 25 21 20 27 27 H 1.08000 * 119.99924 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00193 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.99962 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47433 * 5.00381 * 3 2 1 31 31 H 1.08998 * 109.47072 * 245.00063 * 3 2 1 32 32 H 1.09000 * 109.47245 * 30.00240 * 5 4 3 33 33 H 1.08996 * 109.47605 * 150.00115 * 5 4 3 34 34 H 0.97001 * 119.99709 * 179.97438 * 9 8 6 35 35 H 1.08000 * 120.05374 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.81425 * 180.02562 * 20 18 17 37 37 H 0.96702 * 113.99989 * 90.00294 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5304 1.7695 2.4505 6 6 2.7229 3.2583 2.5822 7 1 3.1483 3.8222 1.7651 8 6 2.3560 3.9007 3.7457 9 7 1.8376 3.2141 4.7405 10 14 2.5954 5.7461 3.9091 11 1 1.8154 6.4417 2.8541 12 1 2.1256 6.1896 5.2463 13 1 4.0357 6.0739 3.7573 14 6 4.2759 0.9539 0.9587 15 8 4.6837 0.6776 -0.1529 16 6 5.1845 0.8756 2.1184 17 6 5.3845 1.9946 2.9309 18 6 6.2397 1.9164 4.0097 19 17 6.4937 3.3094 5.0142 20 6 6.8974 0.7299 4.2958 21 6 6.7026 -0.3846 3.5046 22 7 7.4091 -1.6467 3.8190 23 8 8.1621 -1.7013 4.7748 24 8 7.2376 -2.6306 3.1219 25 6 5.8458 -0.3233 2.4157 26 8 5.6534 -1.4183 1.6379 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4733 1.5285 2.5627 33 1 3.1034 1.2592 3.2246 34 1 1.5798 3.6660 5.5592 35 1 4.8735 2.9204 2.7118 36 1 7.5653 0.6769 5.1429 37 1 4.9245 -1.9837 1.9281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624972238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:44 Heat of formation + Delta-G solvation = -31.745710 kcal Electronic energy + Delta-G solvation = -27801.455280 eV Core-core repulsion = 23574.493211 eV Total energy + Delta-G solvation = -4226.962069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16827 -40.48339 -38.68444 -37.51192 -36.43840 -36.07603 -35.73063 -33.84004 -32.54023 -31.87046 -30.22109 -27.87986 -26.41209 -26.22119 -23.83371 -22.96421 -22.55843 -20.40017 -19.65988 -18.83874 -18.40830 -18.25918 -17.48263 -16.87604 -16.54803 -16.45377 -16.12182 -15.65888 -15.12610 -14.67954 -14.65345 -14.36002 -13.52162 -13.28047 -12.92079 -12.90015 -12.73101 -12.40180 -11.74841 -11.65634 -11.57776 -11.48119 -11.44150 -11.26924 -11.09875 -11.07566 -11.04108 -10.94563 -10.79682 -10.45146 -10.07331 -9.70719 -9.45888 -9.15832 -8.90494 -8.80958 -8.09180 -6.46111 -4.56410 -0.14054 0.51389 1.28540 1.35329 2.00884 2.37759 2.76966 3.06745 3.13706 3.15566 3.19337 3.55921 3.69262 4.08670 4.42262 4.58878 4.70046 4.87113 4.96129 5.05966 5.21539 5.28488 5.37468 5.68485 5.76778 5.85163 6.02559 6.15599 6.21151 6.40133 6.44248 6.76100 6.81832 6.91740 7.20656 7.28767 7.46175 7.72744 7.73455 7.92106 8.43147 8.59361 9.11989 10.59346 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.006094 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.032181 B = 4593.539548 C = 7087.459949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.142 3.858 4 N -0.582 5.582 5 C 0.233 3.767 6 C -0.557 4.557 7 H 0.066 0.934 8 C 0.078 3.922 9 N -0.875 5.875 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.564 3.436 15 O -0.540 6.540 16 C -0.133 4.133 17 C 0.013 3.987 18 C -0.052 4.052 19 Cl -0.034 7.034 20 C -0.025 4.025 21 C -0.083 4.083 22 N 0.040 4.960 23 O -0.175 6.175 24 O -0.140 6.140 25 C 0.220 3.780 26 O -0.459 6.459 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.270 0.730 35 H 0.193 0.807 36 H 0.164 0.836 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -3.313 -0.992 4.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.020 3.980 4 N -0.312 5.312 5 C 0.113 3.887 6 C -0.595 4.595 7 H 0.084 0.916 8 C -0.129 4.129 9 N -0.510 5.510 10 Si 0.712 3.288 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.350 3.650 15 O -0.418 6.418 16 C -0.137 4.137 17 C -0.006 4.006 18 C -0.080 4.080 19 Cl -0.005 7.005 20 C -0.045 4.045 21 C -0.167 4.167 22 N 0.559 4.441 23 O -0.386 6.386 24 O -0.360 6.360 25 C 0.171 3.829 26 O -0.271 6.271 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.210 0.790 36 H 0.182 0.818 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.144 -2.485 -1.712 4.358 hybrid contribution -0.257 0.613 0.905 1.123 sum 2.887 -1.872 -0.807 3.535 Atomic orbital electron populations 1.23807 0.95753 1.01756 1.00977 1.23321 0.96130 0.99034 0.99506 1.20501 0.92106 0.95152 0.90243 1.48177 1.07834 1.62249 1.12897 1.19561 0.96796 0.95152 0.77176 1.21405 1.44344 0.92533 1.01187 0.91596 1.24903 0.94060 0.98543 0.95365 1.69891 1.39612 1.36443 1.05098 0.86710 0.79396 0.84829 0.77819 1.19801 1.20797 1.19356 1.17602 0.82170 0.78151 0.87076 1.90777 1.76017 1.50612 1.24428 1.20222 1.01037 0.93347 0.99130 1.22571 0.88744 1.01313 0.87950 1.20477 1.01228 0.89727 0.96588 1.98409 1.95565 1.39076 1.67423 1.20816 0.96887 0.88828 0.97957 1.21143 1.06807 0.86805 1.01975 1.43221 0.99387 1.02011 0.99493 1.94527 1.33286 1.90646 1.20101 1.94565 1.68143 1.25459 1.47826 1.17999 0.90677 0.88424 0.85766 1.84815 1.56829 1.34121 1.51300 0.88728 0.88320 0.87759 0.89477 0.89439 0.93877 0.94744 0.91986 0.79033 0.81803 0.73563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 29.01 0.42 -1.94 16 2 C -0.16 -2.32 9.84 -36.03 -0.35 -2.67 16 3 C 0.14 2.32 5.93 -5.19 -0.03 2.29 16 4 N -0.58 -10.75 2.44 -177.67 -0.43 -11.18 16 5 C 0.23 4.79 4.73 -5.20 -0.02 4.77 16 6 C -0.56 -12.31 6.56 -34.44 -0.23 -12.53 16 7 H 0.07 1.47 7.76 -52.48 -0.41 1.06 16 8 C 0.08 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.87 -21.33 13.29 55.43 0.74 -20.59 16 10 Si 0.89 18.31 29.54 -169.99 -5.02 13.29 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 14 C 0.56 10.71 6.77 -12.47 -0.08 10.62 16 15 O -0.54 -11.39 16.36 4.63 0.08 -11.31 16 16 C -0.13 -2.32 4.64 -104.85 -0.49 -2.81 16 17 C 0.01 0.22 7.56 -39.16 -0.30 -0.07 16 18 C -0.05 -0.81 6.31 -39.56 -0.25 -1.06 16 19 Cl -0.03 -0.50 28.94 -51.86 -1.50 -2.01 16 20 C -0.02 -0.36 9.32 -39.49 -0.37 -0.73 16 21 C -0.08 -1.29 6.86 -79.85 -0.55 -1.84 16 22 N 0.04 0.64 4.45 34.01 0.15 0.80 16 23 O -0.17 -2.82 18.44 -29.46 -0.54 -3.36 16 24 O -0.14 -2.31 17.24 -36.50 -0.63 -2.94 16 25 C 0.22 3.58 6.69 -38.71 -0.26 3.32 16 26 O -0.46 -7.06 10.79 -43.08 -0.46 -7.53 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 29 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.09 1.39 7.76 -51.93 -0.40 0.99 16 31 H 0.09 1.44 7.23 -51.93 -0.38 1.06 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.03 0.74 6.14 -51.93 -0.32 0.42 16 34 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 35 H 0.19 3.60 5.20 -52.49 -0.27 3.33 16 36 H 0.16 2.00 7.59 -52.49 -0.40 1.60 16 37 H 0.40 4.48 9.06 45.56 0.41 4.89 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -26.36 348.89 -7.55 -33.92 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.57 Total: 6.62 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.61 Total: -0.96 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.45 Total: -30.98 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -1.56 Total: -25.15 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.36 -7.55 -33.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624972238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.172 kcal (2) G-P(sol) polarization free energy of solvation -26.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds