Wall clock time and date at job start Sat Apr 11 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47222 * 204.21373 * 3 2 1 5 5 C 1.37102 * 119.99819 * 264.09198 * 4 3 2 6 6 H 1.08002 * 120.00229 * 198.05963 * 5 4 3 7 7 C 1.38954 * 119.99809 * 18.05782 * 5 4 3 8 8 N 1.31407 * 120.00140 * 21.01872 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 201.02024 * 7 5 4 10 10 H 1.48503 * 109.47233 * 59.99707 * 9 7 5 11 11 H 1.48502 * 109.47347 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47324 * 300.00191 * 9 7 5 13 13 C 1.34769 * 120.00313 * 84.08710 * 4 3 2 14 14 O 1.21290 * 119.99802 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99974 * 180.02562 * 13 4 3 16 16 N 1.46511 * 109.47065 * 179.97438 * 15 13 4 17 17 S 1.65595 * 119.99735 * 164.99875 * 16 15 13 18 18 O 1.42093 * 106.40697 * 311.46110 * 17 16 15 19 19 O 1.42104 * 106.39779 * 178.54010 * 17 16 15 20 20 C 1.76202 * 107.21749 * 65.00530 * 17 16 15 21 21 C 1.38265 * 119.98508 * 270.24937 * 20 17 16 22 22 C 1.38219 * 120.05095 * 180.25818 * 21 20 17 23 23 C 1.38223 * 120.02629 * 359.48881 * 22 21 20 24 24 C 1.38437 * 119.97024 * 0.25713 * 23 22 21 25 25 F 1.35099 * 120.02069 * 179.97438 * 24 23 22 26 26 C 1.38175 * 119.98931 * 89.99899 * 20 17 16 27 27 H 4.40644 * 5.51405 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47212 * 84.20948 * 3 2 1 29 29 H 1.09001 * 109.47330 * 324.20831 * 3 2 1 30 30 H 0.96998 * 119.99973 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47171 * 60.00575 * 15 13 4 32 32 H 1.08992 * 109.47571 * 299.99868 * 15 13 4 33 33 H 0.96998 * 119.99650 * 344.99850 * 16 15 13 34 34 H 1.08001 * 119.97541 * 0.02562 * 21 20 17 35 35 H 1.08001 * 119.98875 * 179.76732 * 22 21 20 36 36 H 1.08004 * 120.01620 * 180.23782 * 23 22 21 37 37 H 1.08003 * 120.01351 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2606 0.5665 5 6 3.4771 2.2974 -0.2623 6 1 4.0976 3.1008 0.1064 7 6 3.0266 2.3145 -1.5767 8 7 1.9741 1.6065 -1.9198 9 14 3.9174 3.3439 -2.8559 10 1 5.3262 2.8872 -2.9653 11 1 3.2436 3.1917 -4.1705 12 1 3.8902 4.7717 -2.4487 13 6 3.2451 1.4005 1.9023 14 8 2.9417 0.4831 2.6355 15 6 3.7463 2.6968 2.4849 16 7 3.7745 2.5967 3.9464 17 16 4.6180 3.7097 4.8363 18 8 5.9017 3.8138 4.2362 19 8 4.4236 3.3630 6.2006 20 6 3.8313 5.2689 4.6022 21 6 4.2275 6.0942 3.5660 22 6 3.6150 7.3198 3.3844 23 6 2.5983 7.7174 4.2323 24 6 2.1973 6.8897 5.2669 25 9 1.2041 7.2775 6.0966 26 6 2.8153 5.6642 5.4511 27 1 -1.0502 -0.0004 0.0000 28 1 3.0094 -0.1029 -1.0224 29 1 3.0098 -0.8328 0.6010 30 1 1.6595 1.6188 -2.8373 31 1 3.0819 3.5088 2.1896 32 1 4.7517 2.8969 2.1147 33 1 3.2992 1.8785 4.3925 34 1 5.0187 5.7824 2.9002 35 1 3.9278 7.9653 2.5769 36 1 2.1172 8.6735 4.0878 37 1 2.5035 5.0179 6.2583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639281923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:55 Heat of formation + Delta-G solvation = -52.268105 kcal Electronic energy + Delta-G solvation = -26916.891666 eV Core-core repulsion = 22703.456175 eV Total energy + Delta-G solvation = -4213.435491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15266 -39.17578 -38.91224 -37.20442 -35.82802 -35.55000 -34.11977 -32.03170 -31.70168 -31.50955 -30.80934 -27.70432 -25.77656 -24.27690 -23.83249 -23.04916 -19.70592 -19.53117 -18.50606 -18.18887 -17.56899 -16.85637 -16.65147 -16.49631 -15.95709 -15.89294 -15.74829 -15.65115 -14.73823 -14.69835 -14.41871 -14.21902 -13.87026 -13.52703 -13.33034 -12.85830 -12.71919 -12.53821 -12.14444 -12.10136 -12.06273 -11.90220 -11.86509 -11.83256 -11.62543 -11.15323 -10.92777 -10.76450 -10.60063 -9.77734 -9.49222 -9.45122 -9.35497 -9.11053 -8.83087 -8.65787 -8.08758 -6.54252 -4.13699 0.26042 0.54011 0.83924 2.88394 2.99490 3.11867 3.12368 3.19505 3.54780 3.74819 3.80928 3.89606 4.01399 4.19169 4.25355 4.54258 4.58047 4.76711 4.80514 4.84725 5.01927 5.22004 5.43123 5.58402 5.60115 5.66897 5.76011 5.86067 5.87086 5.95832 6.13197 6.48052 6.56161 6.74868 7.08105 7.17133 7.26449 7.49487 8.11250 8.84486 8.90052 9.21608 9.62429 10.44474 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.003876 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.146339 B = 7221.342161 C = 7913.743918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.102 4.102 3 C 0.242 3.758 4 N -0.429 5.429 5 C -0.357 4.357 6 H 0.103 0.897 7 C 0.043 3.957 8 N -0.844 5.844 9 Si 0.918 3.082 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.456 3.544 14 O -0.597 6.597 15 C 0.115 3.885 16 N -1.099 6.099 17 S 2.702 3.298 18 O -0.952 6.952 19 O -0.958 6.958 20 C -0.650 4.650 21 C -0.028 4.028 22 C -0.109 4.109 23 C -0.101 4.101 24 C 0.077 3.923 25 F -0.136 7.136 26 C -0.052 4.052 27 H 0.198 0.802 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.273 0.727 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.427 0.573 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 10.044 6.289 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.103 4.103 3 C 0.120 3.880 4 N -0.147 5.147 5 C -0.484 4.484 6 H 0.121 0.879 7 C -0.165 4.165 8 N -0.479 5.479 9 Si 0.744 3.256 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.243 3.757 14 O -0.484 6.484 15 C -0.014 4.014 16 N -0.864 5.864 17 S 2.789 3.211 18 O -0.942 6.942 19 O -0.949 6.949 20 C -0.735 4.735 21 C -0.047 4.047 22 C -0.128 4.128 23 C -0.120 4.120 24 C 0.057 3.943 25 F -0.114 7.114 26 C -0.072 4.072 27 H 0.215 0.785 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.266 0.734 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.492 9.556 6.868 12.029 hybrid contribution -1.027 1.074 -0.940 1.758 sum 1.465 10.629 5.928 12.258 Atomic orbital electron populations 1.24204 0.95332 1.03417 1.05822 1.23068 0.94279 0.97221 0.95754 1.18075 0.84300 0.85975 0.99668 1.43619 1.54993 1.12413 1.03670 1.19579 1.31894 1.03883 0.93019 0.87931 1.25302 0.94641 0.97747 0.98781 1.70102 1.18633 1.39609 1.19564 0.86141 0.79846 0.79980 0.79632 1.19512 1.20863 1.19697 1.19811 0.84088 0.89055 0.82770 1.90541 1.56489 1.42066 1.59261 1.20945 1.03175 0.99077 0.78235 1.55169 1.71874 1.43432 1.15881 1.01729 0.73731 0.72794 0.72895 1.93596 1.36273 1.86334 1.77952 1.93590 1.86257 1.82751 1.32265 1.31131 1.12138 1.24707 1.05532 1.21127 0.96873 0.92889 0.93861 1.21216 0.95562 0.96742 0.99295 1.21488 0.97096 0.99836 0.93538 1.17706 0.89690 0.95073 0.91874 1.91528 1.58652 1.91024 1.70240 1.20883 0.93027 0.95154 0.98136 0.78522 0.87636 0.91284 0.91609 0.89377 0.88213 0.73382 0.83085 0.83759 0.83972 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.86 19.25 29.55 0.57 -5.29 16 2 C -0.10 -2.40 11.52 -37.12 -0.43 -2.82 16 3 C 0.24 5.54 5.06 -6.83 -0.03 5.51 16 4 N -0.43 -9.93 2.60 -117.93 -0.31 -10.24 16 5 C -0.36 -8.09 9.12 -14.93 -0.14 -8.22 16 6 H 0.10 2.10 6.57 -52.49 -0.34 1.76 16 7 C 0.04 0.98 4.87 -17.47 -0.09 0.90 16 8 N -0.84 -20.34 9.47 55.50 0.53 -19.81 16 9 Si 0.92 17.64 29.60 -169.99 -5.03 12.61 16 10 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 13 C 0.46 10.07 7.64 -10.99 -0.08 9.98 16 14 O -0.60 -14.40 15.41 5.55 0.09 -14.31 16 15 C 0.11 2.01 5.17 -5.19 -0.03 1.98 16 16 N -1.10 -17.31 5.93 -11.65 -0.07 -17.38 16 17 S 2.70 38.87 5.74 -107.50 -0.62 38.25 16 18 O -0.95 -15.46 16.76 -57.17 -0.96 -16.42 16 19 O -0.96 -15.50 17.28 -57.17 -0.99 -16.49 16 20 C -0.65 -8.19 5.94 -39.59 -0.24 -8.43 16 21 C -0.03 -0.32 9.52 -39.58 -0.38 -0.69 16 22 C -0.11 -1.03 10.04 -39.59 -0.40 -1.43 16 23 C -0.10 -0.97 10.03 -39.51 -0.40 -1.37 16 24 C 0.08 0.89 7.30 -39.42 -0.29 0.60 16 25 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 26 C -0.05 -0.64 9.50 -39.52 -0.38 -1.02 16 27 H 0.20 3.50 7.80 -54.08 -0.42 3.08 16 28 H 0.11 2.42 6.47 -51.93 -0.34 2.09 16 29 H 0.07 1.51 7.61 -51.93 -0.39 1.12 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 31 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 32 H 0.10 1.62 7.29 -51.93 -0.38 1.24 16 33 H 0.43 6.90 7.70 -34.47 -0.27 6.64 16 34 H 0.15 1.50 7.62 -52.49 -0.40 1.10 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.15 1.72 7.62 -52.48 -0.40 1.32 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -30.92 347.55 -7.72 -38.64 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.34 Total: 11.80 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.29 Total: -10.30 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.15 Total: -47.43 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.86 Total: -47.22 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.62 Total: 38.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.92 -7.72 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639281923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds