Wall clock time and date at job start Sat Apr 11 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47222 * 204.21373 * 3 2 1 5 5 C 1.37102 * 119.99819 * 264.09198 * 4 3 2 6 6 H 1.08002 * 120.00229 * 198.05963 * 5 4 3 7 7 C 1.38954 * 119.99809 * 18.05782 * 5 4 3 8 8 N 1.31407 * 120.00140 * 21.01872 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 201.02024 * 7 5 4 10 10 H 1.48503 * 109.47233 * 59.99707 * 9 7 5 11 11 H 1.48502 * 109.47347 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47324 * 300.00191 * 9 7 5 13 13 C 1.34769 * 120.00313 * 84.08710 * 4 3 2 14 14 O 1.21290 * 119.99802 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99974 * 180.02562 * 13 4 3 16 16 N 1.46511 * 109.47065 * 179.97438 * 15 13 4 17 17 S 1.65595 * 119.99735 * 164.99875 * 16 15 13 18 18 O 1.42093 * 106.40697 * 311.46110 * 17 16 15 19 19 O 1.42104 * 106.39779 * 178.54010 * 17 16 15 20 20 C 1.76202 * 107.21749 * 65.00530 * 17 16 15 21 21 C 1.38265 * 119.98508 * 270.24937 * 20 17 16 22 22 C 1.38219 * 120.05095 * 180.25818 * 21 20 17 23 23 C 1.38223 * 120.02629 * 359.48881 * 22 21 20 24 24 C 1.38437 * 119.97024 * 0.25713 * 23 22 21 25 25 F 1.35099 * 120.02069 * 179.97438 * 24 23 22 26 26 C 1.38175 * 119.98931 * 89.99899 * 20 17 16 27 27 H 4.40644 * 5.51405 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47212 * 84.20948 * 3 2 1 29 29 H 1.09001 * 109.47330 * 324.20831 * 3 2 1 30 30 H 0.96998 * 119.99973 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47171 * 60.00575 * 15 13 4 32 32 H 1.08992 * 109.47571 * 299.99868 * 15 13 4 33 33 H 0.96998 * 119.99650 * 344.99850 * 16 15 13 34 34 H 1.08001 * 119.97541 * 0.02562 * 21 20 17 35 35 H 1.08001 * 119.98875 * 179.76732 * 22 21 20 36 36 H 1.08004 * 120.01620 * 180.23782 * 23 22 21 37 37 H 1.08003 * 120.01351 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2606 0.5665 5 6 3.4771 2.2974 -0.2623 6 1 4.0976 3.1008 0.1064 7 6 3.0266 2.3145 -1.5767 8 7 1.9741 1.6065 -1.9198 9 14 3.9174 3.3439 -2.8559 10 1 5.3262 2.8872 -2.9653 11 1 3.2436 3.1917 -4.1705 12 1 3.8902 4.7717 -2.4487 13 6 3.2451 1.4005 1.9023 14 8 2.9417 0.4831 2.6355 15 6 3.7463 2.6968 2.4849 16 7 3.7745 2.5967 3.9464 17 16 4.6180 3.7097 4.8363 18 8 5.9017 3.8138 4.2362 19 8 4.4236 3.3630 6.2006 20 6 3.8313 5.2689 4.6022 21 6 4.2275 6.0942 3.5660 22 6 3.6150 7.3198 3.3844 23 6 2.5983 7.7174 4.2323 24 6 2.1973 6.8897 5.2669 25 9 1.2041 7.2775 6.0966 26 6 2.8153 5.6642 5.4511 27 1 -1.0502 -0.0004 0.0000 28 1 3.0094 -0.1029 -1.0224 29 1 3.0098 -0.8328 0.6010 30 1 1.6595 1.6188 -2.8373 31 1 3.0819 3.5088 2.1896 32 1 4.7517 2.8969 2.1147 33 1 3.2992 1.8785 4.3925 34 1 5.0187 5.7824 2.9002 35 1 3.9278 7.9653 2.5769 36 1 2.1172 8.6735 4.0878 37 1 2.5035 5.0179 6.2583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639281923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:54 Heat of formation + Delta-G solvation = -72.846210 kcal Electronic energy + Delta-G solvation = -26917.784000 eV Core-core repulsion = 22703.456175 eV Total energy + Delta-G solvation = -4214.327825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.03360 -40.62306 -39.99941 -38.43727 -37.22505 -37.06060 -35.56531 -33.76900 -33.25459 -32.53736 -31.64741 -29.31294 -27.42623 -25.92866 -24.70451 -23.88758 -21.25594 -20.76954 -19.80832 -19.56587 -18.94862 -18.30570 -17.70668 -17.42473 -17.32983 -16.99850 -16.93931 -16.72909 -16.31027 -16.20432 -15.94721 -15.37974 -14.96003 -14.89935 -14.41711 -14.30948 -13.83362 -13.75852 -13.51675 -13.42310 -13.37092 -13.30969 -13.22064 -13.13980 -12.84614 -12.70642 -12.44665 -12.12687 -11.89214 -11.22408 -11.18501 -10.70208 -10.60368 -10.57324 -10.36425 -9.96421 -9.85360 -8.25497 -5.90616 -0.80153 -0.41181 0.00336 1.46585 1.57592 1.64636 1.77183 1.89839 2.12368 2.27066 2.36420 2.43649 2.64615 2.97429 3.09591 3.15714 3.35577 3.65770 3.82858 3.90893 3.95488 4.02517 4.19250 4.39304 4.43066 4.54505 4.67106 4.77211 4.84186 4.85891 4.95671 5.00692 5.09385 5.40203 5.48492 5.68018 5.73379 5.95511 6.37356 7.10682 7.14669 7.49439 7.90035 8.73264 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.003876 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.146339 B = 7221.342161 C = 7913.743918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.145 4.145 3 C 0.242 3.758 4 N -0.440 5.440 5 C -0.371 4.371 6 H 0.124 0.876 7 C 0.004 3.996 8 N -0.873 5.873 9 Si 0.984 3.016 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.258 1.258 13 C 0.443 3.557 14 O -0.626 6.626 15 C 0.122 3.878 16 N -1.103 6.103 17 S 2.720 3.280 18 O -0.971 6.971 19 O -0.981 6.981 20 C -0.656 4.656 21 C -0.038 4.038 22 C -0.102 4.102 23 C -0.091 4.091 24 C 0.061 3.939 25 F -0.141 7.141 26 C -0.068 4.068 27 H 0.233 0.767 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.270 0.730 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.424 0.576 34 H 0.164 0.836 35 H 0.181 0.819 36 H 0.173 0.827 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 12.726 5.414 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.146 4.146 3 C 0.120 3.880 4 N -0.157 5.157 5 C -0.498 4.498 6 H 0.141 0.859 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.807 3.193 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.182 1.182 13 C 0.231 3.769 14 O -0.514 6.514 15 C -0.007 4.007 16 N -0.866 5.866 17 S 2.811 3.189 18 O -0.961 6.961 19 O -0.971 6.971 20 C -0.745 4.745 21 C -0.057 4.057 22 C -0.121 4.121 23 C -0.109 4.109 24 C 0.041 3.959 25 F -0.120 7.120 26 C -0.089 4.089 27 H 0.249 0.751 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.262 0.738 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.689 12.213 6.009 13.874 hybrid contribution -1.149 0.267 -0.647 1.345 sum 1.540 12.480 5.362 13.670 Atomic orbital electron populations 1.25097 0.96361 1.01874 1.04229 1.23477 0.95122 0.98744 0.97276 1.17993 0.84553 0.86350 0.99142 1.43854 1.55023 1.12554 1.04293 1.20086 1.32124 1.04257 0.93314 0.85871 1.26108 0.94910 0.98802 1.00281 1.70227 1.19945 1.41159 1.19564 0.85127 0.78384 0.79120 0.76633 1.19274 1.21812 1.18231 1.20575 0.83608 0.90284 0.82410 1.90512 1.57609 1.43476 1.59810 1.20903 1.04078 0.96842 0.78854 1.55173 1.71962 1.44183 1.15238 1.00936 0.73121 0.72907 0.71961 1.93561 1.37634 1.86814 1.78116 1.93555 1.86534 1.83555 1.33464 1.30666 1.13019 1.23701 1.07091 1.21467 0.97261 0.93531 0.93435 1.21644 0.94544 0.96196 0.99703 1.21902 0.96513 1.00449 0.92076 1.17911 0.89924 0.95326 0.92698 1.91513 1.58901 1.91014 1.70583 1.20971 0.93468 0.95957 0.98461 0.75085 0.88436 0.91536 0.91972 0.87710 0.86705 0.73786 0.81852 0.80154 0.80913 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.05 19.25 74.32 1.43 -9.61 16 2 C -0.14 -6.89 11.52 31.12 0.36 -6.53 16 3 C 0.24 11.36 5.06 84.57 0.43 11.79 16 4 N -0.44 -20.40 2.60 -645.42 -1.68 -22.08 16 5 C -0.37 -16.46 9.12 84.04 0.77 -15.69 16 6 H 0.12 4.78 6.57 -2.91 -0.02 4.76 16 7 C 0.00 0.17 4.87 84.93 0.41 0.58 16 8 N -0.87 -42.00 9.47 21.66 0.21 -41.79 16 9 Si 0.98 34.98 29.60 68.60 2.03 37.01 16 10 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 11 H -0.29 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 13 C 0.44 19.61 7.64 87.66 0.67 20.28 16 14 O -0.63 -30.75 15.41 -3.06 -0.05 -30.79 16 15 C 0.12 4.17 5.17 85.63 0.44 4.61 16 16 N -1.10 -34.57 5.93 -190.78 -1.13 -35.70 16 17 S 2.72 77.28 5.74 -56.49 -0.32 76.96 16 18 O -0.97 -30.80 16.76 -128.00 -2.15 -32.95 16 19 O -0.98 -32.06 17.28 -128.00 -2.21 -34.28 16 20 C -0.66 -15.69 5.94 22.26 0.13 -15.56 16 21 C -0.04 -0.74 9.52 22.27 0.21 -0.53 16 22 C -0.10 -1.52 10.04 22.26 0.22 -1.30 16 23 C -0.09 -1.44 10.03 22.31 0.22 -1.21 16 24 C 0.06 1.32 7.30 22.37 0.16 1.48 16 25 F -0.14 -3.20 17.27 44.97 0.78 -2.43 16 26 C -0.07 -1.63 9.50 22.31 0.21 -1.41 16 27 H 0.23 7.77 7.80 -4.41 -0.03 7.73 16 28 H 0.10 4.62 6.47 -2.39 -0.02 4.61 16 29 H 0.07 3.04 7.61 -2.39 -0.02 3.02 16 30 H 0.27 12.56 8.31 -92.71 -0.77 11.79 16 31 H 0.11 3.21 8.10 -2.39 -0.02 3.19 16 32 H 0.12 3.54 7.29 -2.39 -0.02 3.53 16 33 H 0.42 13.98 7.70 -96.75 -0.75 13.24 16 34 H 0.16 2.75 7.62 -2.91 -0.02 2.72 16 35 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.15 3.46 7.62 -2.91 -0.02 3.44 16 Total: -1.00 -66.24 347.55 1.54 -64.69 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.39 Total: 34.45 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.68 Total: -13.10 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -2.60 Total: -99.58 kcal Atomic # 8 Polarization: -93.61 SS G_CDS: -4.40 Total: -98.01 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: 77.28 SS G_CDS: -0.32 Total: 76.96 kcal Total: -66.24 1.54 -64.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639281923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.151 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds