Wall clock time and date at job start Sat Apr 11 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.37779 * 119.99818 * 211.54852 * 3 2 1 5 5 C 1.46434 * 120.00038 * 353.48412 * 4 3 2 6 6 C 1.40240 * 120.13467 * 330.21101 * 5 4 3 7 7 C 1.36607 * 119.86517 * 179.76720 * 6 5 4 8 8 C 1.39114 * 120.13115 * 0.50486 * 7 6 5 9 9 O 1.35674 * 119.86578 * 179.76543 * 8 7 6 10 10 C 1.39116 * 120.27334 * 359.74664 * 8 7 6 11 11 C 1.36603 * 120.13727 * 359.97438 * 10 8 7 12 12 C 1.47128 * 119.99865 * 31.55174 * 3 2 1 13 13 O 1.21654 * 119.99510 * 179.97438 * 12 3 2 14 14 N 1.34774 * 120.00658 * 0.02562 * 12 3 2 15 15 C 1.46491 * 120.00480 * 180.02562 * 14 12 3 16 16 H 1.08997 * 109.47290 * 34.99497 * 15 14 12 17 17 C 1.50699 * 109.47437 * 154.99816 * 15 14 12 18 18 H 1.08002 * 120.00037 * 0.02562 * 17 15 14 19 19 C 1.37874 * 120.00030 * 180.02562 * 17 15 14 20 20 N 1.31506 * 120.00450 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99742 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47160 * 60.00089 * 21 19 17 23 23 H 1.48499 * 109.46816 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47385 * 299.99756 * 21 19 17 25 25 C 1.53003 * 109.46898 * 274.99747 * 15 14 12 26 26 F 1.39896 * 109.47075 * 60.00228 * 25 15 14 27 27 F 1.39906 * 109.46879 * 179.97438 * 25 15 14 28 28 F 1.39893 * 109.47162 * 299.99673 * 25 15 14 29 29 H 1.07995 * 119.99895 * 173.20117 * 4 3 2 30 30 H 1.08004 * 120.07179 * 0.02562 * 6 5 4 31 31 H 1.07997 * 119.93283 * 180.25507 * 7 6 5 32 32 H 0.96704 * 114.00353 * 269.98406 * 9 8 7 33 33 H 1.08002 * 119.93301 * 179.97438 * 10 8 7 34 34 H 1.07994 * 120.07178 * 180.02562 * 11 10 8 35 35 H 0.97004 * 119.99610 * 359.97438 * 14 12 3 36 36 H 0.97006 * 120.00631 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2564 1.0178 0.6243 5 6 2.5308 2.1700 1.1631 6 6 1.3326 2.5890 0.5668 7 6 0.6577 3.6616 1.0769 8 6 1.1622 4.3444 2.1789 9 8 0.4899 5.4119 2.6781 10 6 2.3530 3.9368 2.7715 11 6 3.0340 2.8622 2.2741 12 6 3.3041 -1.0848 -0.6667 13 8 4.5207 -1.0840 -0.6671 14 7 2.6308 -2.0796 -1.2780 15 6 3.3638 -3.1606 -1.9413 16 1 4.2741 -3.3784 -1.3829 17 6 2.4999 -4.3943 -1.9947 18 1 1.5043 -4.3749 -1.5767 19 6 2.9806 -5.5478 -2.5772 20 7 4.1928 -5.5714 -3.0867 21 14 1.9100 -7.0772 -2.6428 22 1 0.6697 -6.7810 -3.4038 23 1 2.6530 -8.1730 -3.3153 24 1 1.5561 -7.4933 -1.2620 25 6 3.7285 -2.7314 -3.3639 26 9 4.5305 -1.5863 -3.3143 27 9 4.4290 -3.7637 -3.9972 28 9 2.5601 -2.4520 -4.0807 29 1 4.3307 0.9632 0.7204 30 1 0.9419 2.0621 -0.2913 31 1 -0.2673 3.9826 0.6211 32 1 0.7462 6.2573 2.2846 33 1 2.7399 4.4712 3.6267 34 1 3.9582 2.5465 2.7352 35 1 1.6608 -2.0800 -1.2780 36 1 4.5309 -6.3828 -3.4969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645009813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:01 Heat of formation + Delta-G solvation = -134.934679 kcal Electronic energy + Delta-G solvation = -28773.614123 eV Core-core repulsion = 24002.753553 eV Total energy + Delta-G solvation = -4770.860570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.40036 -46.05505 -45.65949 -40.33018 -39.34809 -37.65315 -36.49484 -34.89159 -33.51858 -32.65847 -31.60428 -29.83863 -28.21653 -24.83597 -24.50859 -23.23807 -22.06573 -21.52696 -20.52863 -18.94360 -18.68942 -17.13048 -16.95375 -16.67313 -16.54386 -16.16840 -15.87249 -15.45929 -15.09512 -14.90291 -14.67720 -14.46992 -14.21217 -13.99850 -13.27535 -13.22265 -13.09976 -12.97170 -12.74328 -12.66778 -12.57380 -12.44996 -12.32460 -12.13528 -12.03909 -12.01271 -11.86053 -11.22444 -10.90876 -10.88426 -10.83168 -10.46250 -10.11499 -9.74927 -9.61423 -9.49998 -8.78060 -8.54953 -8.33927 -6.28266 -4.52702 -0.05143 1.00443 1.32000 2.57993 2.84061 3.18470 3.20945 3.23606 3.25060 3.52458 3.69507 3.79492 3.85825 4.17363 4.39661 4.44748 4.51300 4.52745 4.88394 4.88711 5.02777 5.18752 5.37603 5.52212 5.61090 5.65771 5.77437 5.80912 5.94602 5.99215 6.12371 6.14781 6.32791 6.82212 6.98141 7.21141 7.37502 7.38513 7.57853 8.11614 8.41689 8.63195 9.15326 10.63277 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002758 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.108612 B =10150.911734 C =10602.916938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.249 3.751 3 C -0.109 4.109 4 C 0.049 3.951 5 C -0.102 4.102 6 C -0.078 4.078 7 C -0.145 4.145 8 C 0.123 3.877 9 O -0.499 6.499 10 C -0.150 4.150 11 C -0.066 4.066 12 C 0.561 3.439 13 O -0.523 6.523 14 N -0.702 5.702 15 C 0.245 3.755 16 H 0.091 0.909 17 C -0.555 4.555 18 H 0.077 0.923 19 C 0.067 3.933 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.417 3.583 26 F -0.217 7.217 27 F -0.135 7.135 28 F -0.208 7.208 29 H 0.167 0.833 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.393 0.607 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.399 0.601 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 17.335 8.517 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.065 4.065 3 C -0.116 4.116 4 C 0.025 3.975 5 C -0.103 4.103 6 C -0.096 4.096 7 C -0.163 4.163 8 C 0.078 3.922 9 O -0.310 6.310 10 C -0.169 4.169 11 C -0.084 4.084 12 C 0.346 3.654 13 O -0.401 6.401 14 N -0.350 5.350 15 C 0.140 3.860 16 H 0.109 0.891 17 C -0.592 4.592 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.472 5.472 21 Si 0.741 3.259 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.361 3.639 26 F -0.199 7.199 27 F -0.116 7.116 28 F -0.190 7.190 29 H 0.185 0.815 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.250 0.750 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.233 0.767 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.594 16.717 8.684 19.016 hybrid contribution -0.387 -0.331 -0.745 0.903 sum -2.981 16.386 7.939 18.450 Atomic orbital electron populations 1.81282 1.11600 1.07891 1.07686 1.25564 0.92780 0.93609 0.94500 1.18629 0.84746 1.00407 1.07771 1.23072 1.00775 0.87827 0.85821 1.19117 0.96005 0.97141 0.98000 1.21386 0.92984 0.95669 0.99597 1.21139 1.01235 0.97590 0.96370 1.18794 0.90791 0.90200 0.92397 1.84757 1.64028 1.16781 1.65392 1.21153 0.94829 0.99165 1.01733 1.21067 0.99533 0.93490 0.94314 1.17572 0.87238 0.81395 0.79230 1.90846 1.12202 1.76523 1.60484 1.46035 1.10514 1.24124 1.54313 1.19820 0.96896 0.84690 0.84591 0.89149 1.20834 1.01714 0.93640 1.43026 0.90490 1.25054 0.95712 0.99548 0.93891 1.70372 1.15492 1.27775 1.33516 0.86266 0.80031 0.80927 0.78644 1.19789 1.20779 1.19705 1.23105 0.73805 0.74068 0.92969 1.93067 1.75442 1.54294 1.97068 1.93413 1.78923 1.55198 1.84084 1.92997 1.50554 1.93958 1.81530 0.81522 0.84986 0.84943 0.74971 0.84753 0.84260 0.76702 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.40 17.90 41.84 0.75 -5.65 16 2 C 0.25 3.64 10.48 -22.47 -0.24 3.40 16 3 C -0.11 -1.54 5.84 -104.53 -0.61 -2.15 16 4 C 0.05 0.54 9.46 -36.45 -0.34 0.19 16 5 C -0.10 -1.03 5.59 -105.09 -0.59 -1.61 16 6 C -0.08 -0.84 8.26 -39.42 -0.33 -1.17 16 7 C -0.14 -1.40 9.92 -39.85 -0.40 -1.80 16 8 C 0.12 1.08 6.72 -38.93 -0.26 0.82 16 9 O -0.50 -3.75 13.48 -18.72 -0.25 -4.00 16 10 C -0.15 -1.17 9.92 -39.85 -0.40 -1.56 16 11 C -0.07 -0.52 9.75 -39.42 -0.38 -0.91 16 12 C 0.56 10.30 7.28 -12.65 -0.09 10.21 16 13 O -0.52 -10.85 14.87 5.23 0.08 -10.77 16 14 N -0.70 -14.21 4.94 -56.11 -0.28 -14.48 16 15 C 0.25 5.93 2.21 -69.09 -0.15 5.78 16 16 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 17 C -0.56 -14.05 8.46 -34.44 -0.29 -14.34 16 18 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 19 C 0.07 1.72 5.20 -17.82 -0.09 1.63 16 20 N -0.84 -22.51 9.50 55.43 0.53 -21.98 16 21 Si 0.92 20.02 29.54 -169.99 -5.02 15.00 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C 0.42 10.42 2.81 37.16 0.10 10.53 16 26 F -0.22 -5.26 15.67 2.25 0.04 -5.22 16 27 F -0.14 -3.65 12.91 2.25 0.03 -3.62 16 28 F -0.21 -5.11 16.94 2.25 0.04 -5.07 16 29 H 0.17 1.57 7.61 -52.49 -0.40 1.17 16 30 H 0.13 1.55 5.35 -52.48 -0.28 1.27 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.39 0.96 9.06 45.56 0.41 1.38 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.40 7.51 7.42 -40.82 -0.30 7.21 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -31.14 336.22 -4.87 -36.01 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -1.77 Total: 5.71 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -4.07 Total: 9.02 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 1.00 Total: -42.12 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.17 Total: -14.77 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 0.10 Total: -13.91 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.14 -4.87 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645009813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.927 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds