Wall clock time and date at job start Sat Apr 11 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47457 * 240.00146 * 3 2 1 5 5 H 1.48497 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46922 * 120.00319 * 3 2 1 7 7 C 1.38705 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99918 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.35498 * 117.00435 * 185.06319 * 9 7 2 11 11 C 1.38837 * 120.16548 * 354.39636 * 10 9 7 12 12 C 1.38024 * 120.08128 * 180.27880 * 11 10 9 13 13 C 1.38590 * 120.41125 * 359.74573 * 12 11 10 14 14 C 1.37814 * 120.32929 * 359.97438 * 13 12 11 15 15 C 1.39723 * 119.91613 * 0.02562 * 14 13 12 16 16 C 1.47393 * 120.20346 * 179.97438 * 15 14 13 17 17 O 1.21511 * 120.00063 * 179.97438 * 16 15 14 18 18 O 1.34759 * 119.99795 * 359.97438 * 16 15 14 19 19 C 1.45206 * 116.99551 * 180.02562 * 18 16 15 20 20 C 1.52582 * 109.24332 * 89.44555 * 19 18 16 21 21 C 1.52969 * 110.02440 * 190.29182 * 20 19 18 22 22 S 1.81672 * 108.97032 * 296.31621 * 21 20 19 23 23 O 1.42102 * 108.66281 * 299.97030 * 22 21 20 24 24 O 1.42099 * 108.74711 * 168.66724 * 22 21 20 25 25 C 1.81665 * 101.30858 * 54.29832 * 22 21 20 26 26 C 1.52593 * 109.24039 * 210.55703 * 19 18 16 27 27 H 0.97000 * 119.99175 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.95757 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.79480 * 179.76841 * 12 11 10 30 30 H 1.08000 * 119.83386 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.03613 * 180.02562 * 14 13 12 32 32 H 1.08997 * 109.24136 * 329.99745 * 19 18 16 33 33 H 1.09008 * 109.38364 * 310.40255 * 20 19 18 34 34 H 1.09000 * 109.38895 * 70.08449 * 20 19 18 35 35 H 1.09006 * 109.56009 * 176.47147 * 21 20 19 36 36 H 1.08992 * 109.64416 * 56.21342 * 21 20 19 37 37 H 1.09007 * 109.54886 * 185.84382 * 25 22 21 38 38 H 1.09001 * 109.62800 * 65.60802 * 25 22 21 39 39 H 1.08998 * 109.38662 * 289.91431 * 26 19 18 40 40 H 1.09009 * 109.38290 * 49.69795 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3346 -2.3688 -0.0016 10 6 2.0683 -3.5029 0.1045 11 6 3.4552 -3.4404 0.0910 12 6 4.2009 -4.5973 0.1934 13 6 3.5742 -5.8274 0.3155 14 6 2.1986 -5.9086 0.3365 15 6 1.4303 -4.7461 0.2338 16 6 -0.0413 -4.8256 0.2550 17 8 -0.7059 -3.8123 0.1659 18 8 -0.6497 -6.0222 0.3731 19 6 -2.1017 -6.0249 0.3863 20 6 -2.6174 -6.1471 -1.0445 21 6 -4.1260 -5.8964 -1.0808 22 16 -4.9632 -7.1919 -0.1209 23 8 -4.6638 -8.4536 -0.7021 24 8 -6.3210 -6.8168 0.0654 25 6 -4.1014 -7.0671 1.4734 26 6 -2.5947 -7.1923 1.2365 27 1 -0.4849 0.8401 0.0004 28 1 3.9511 -2.4856 -0.0038 29 1 5.2795 -4.5437 0.1787 30 1 4.1668 -6.7268 0.3945 31 1 1.7152 -6.8696 0.4322 32 1 -2.4587 -5.0900 0.8183 33 1 -2.1145 -5.4131 -1.6742 34 1 -2.4076 -7.1484 -1.4205 35 1 -4.4757 -5.9235 -2.1128 36 1 -4.3459 -4.9212 -0.6467 37 1 -4.4349 -7.8691 2.1321 38 1 -4.3195 -6.1032 1.9331 39 1 -2.3862 -8.1293 0.7201 40 1 -2.0772 -7.1850 2.1958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646876370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:05 Heat of formation + Delta-G solvation = -153.719907 kcal Electronic energy + Delta-G solvation = -27413.136828 eV Core-core repulsion = 23286.469610 eV Total energy + Delta-G solvation = -4126.667218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.19911 -39.01309 -37.40983 -36.78338 -36.46214 -36.23596 -34.84840 -32.50114 -32.15323 -30.77473 -29.06878 -27.39947 -25.55323 -23.95556 -23.62376 -21.81946 -21.08558 -20.28471 -19.08416 -18.16729 -17.68260 -17.29652 -16.77492 -16.57696 -16.04067 -15.87938 -15.49994 -14.79126 -14.57104 -14.39786 -14.25064 -14.00198 -13.88240 -13.68047 -13.33898 -13.27216 -13.00986 -12.67849 -12.36059 -12.25110 -12.20759 -12.10038 -11.93271 -11.83496 -11.44317 -11.23372 -11.10211 -10.99626 -10.95578 -10.86174 -10.57517 -10.48741 -10.12439 -9.86969 -9.37933 -9.01027 -8.42618 -7.47740 -6.60200 -4.19902 -0.22308 1.49054 2.21844 2.40386 2.87030 3.03246 3.05239 3.07857 3.30386 3.40566 3.81369 3.81745 4.22152 4.24551 4.38585 4.47122 4.63945 4.70991 4.86388 4.90269 4.92297 5.04160 5.26654 5.35643 5.45353 5.50064 5.52694 5.62608 5.65627 5.80887 5.90966 6.02223 6.03885 6.47235 6.55228 6.78179 6.86068 6.99628 7.13546 7.19984 7.56385 7.78329 8.55044 8.80152 9.47938 10.53334 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003198 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.128954 B = 8753.709724 C =10452.918147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.124 6.124 10 C 0.191 3.809 11 C -0.239 4.239 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.015 4.015 15 C -0.219 4.219 16 C 0.497 3.503 17 O -0.474 6.474 18 O -0.353 6.353 19 C 0.073 3.927 20 C -0.129 4.129 21 C -0.596 4.596 22 S 2.415 3.585 23 O -0.935 6.935 24 O -0.944 6.944 25 C -0.601 4.601 26 C -0.108 4.108 27 H 0.274 0.726 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -12.050 1.526 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.022 6.022 10 C 0.131 3.869 11 C -0.258 4.258 12 C -0.061 4.061 13 C -0.253 4.253 14 C -0.034 4.034 15 C -0.222 4.222 16 C 0.342 3.658 17 O -0.360 6.360 18 O -0.272 6.272 19 C 0.017 3.983 20 C -0.167 4.167 21 C -0.726 4.726 22 S 2.597 3.403 23 O -0.933 6.933 24 O -0.941 6.941 25 C -0.730 4.730 26 C -0.146 4.146 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.114 0.886 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.058 -12.040 1.218 12.764 hybrid contribution 1.035 1.541 0.234 1.871 sum -3.023 -10.499 1.452 11.022 Atomic orbital electron populations 1.70097 1.06064 1.28139 1.41988 1.25413 0.95851 0.99074 0.95897 0.85757 0.78824 0.79356 0.79402 1.19238 1.20060 1.19236 1.21498 0.92022 0.80877 1.53511 0.88646 1.84126 1.33882 1.11181 1.73041 1.19221 0.90036 0.86962 0.90649 1.21122 0.93012 0.99511 1.12120 1.20986 0.98851 0.92277 0.93980 1.20556 0.94121 0.97244 1.13377 1.20973 0.93584 0.96209 0.92594 1.17976 0.88112 0.92587 1.23484 1.21186 0.89273 0.80873 0.74439 1.90998 1.65644 1.34934 1.44429 1.86608 1.20250 1.34932 1.85372 1.22580 0.79953 1.00494 0.95289 1.21656 0.91495 1.05490 0.98055 1.30144 1.07396 1.19076 1.15970 1.08156 0.76130 0.77198 0.78826 1.93588 1.85675 1.38353 1.75643 1.93597 1.30654 1.84371 1.85457 1.30190 1.07524 1.12477 1.22787 1.21264 0.91109 0.99155 1.03059 0.91618 0.84803 0.86904 0.86909 0.85671 0.88670 0.88370 0.88817 0.84193 0.84280 0.84062 0.84402 0.88596 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.84 13.67 55.48 0.76 -23.08 16 2 C 0.05 1.22 5.49 -17.51 -0.10 1.12 16 3 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.40 -10.85 9.49 30.91 0.29 -10.56 16 8 H 0.10 2.31 5.21 -52.48 -0.27 2.04 16 9 O -0.12 -3.47 7.84 -20.99 -0.16 -3.64 16 10 C 0.19 4.50 6.66 -38.57 -0.26 4.24 16 11 C -0.24 -4.83 9.16 -39.44 -0.36 -5.20 16 12 C -0.04 -0.70 10.03 -39.53 -0.40 -1.10 16 13 C -0.23 -3.68 10.02 -39.61 -0.40 -4.08 16 14 C -0.02 -0.26 9.61 -39.18 -0.38 -0.64 16 15 C -0.22 -4.59 5.89 -104.83 -0.62 -5.21 16 16 C 0.50 10.38 7.84 34.46 0.27 10.65 16 17 O -0.47 -11.76 14.42 -26.59 -0.38 -12.14 16 18 O -0.35 -5.75 9.11 -40.65 -0.37 -6.12 16 19 C 0.07 0.95 2.21 -27.15 -0.06 0.89 16 20 C -0.13 -1.51 5.33 -26.96 -0.14 -1.65 16 21 C -0.60 -5.58 6.35 37.14 0.24 -5.35 16 22 S 2.42 23.00 5.30 -107.50 -0.57 22.43 16 23 O -0.94 -11.54 17.94 -57.82 -1.04 -12.57 16 24 O -0.94 -12.05 18.11 -57.82 -1.05 -13.10 16 25 C -0.60 -4.52 6.35 37.17 0.24 -4.28 16 26 C -0.11 -1.01 5.37 -26.92 -0.14 -1.16 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.13 1.78 7.61 -52.49 -0.40 1.38 16 32 H 0.10 1.33 7.10 -51.93 -0.37 0.96 16 33 H 0.10 1.35 8.13 -51.92 -0.42 0.93 16 34 H 0.09 0.95 8.01 -51.93 -0.42 0.54 16 35 H 0.14 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.14 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.81 8.01 -51.93 -0.42 0.39 16 40 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -36.57 351.90 -9.03 -45.61 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.69 Total: 5.10 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.82 Total: -22.31 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.76 Total: -23.08 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -3.00 Total: -47.57 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 23.00 SS G_CDS: -0.57 Total: 22.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.57 -9.03 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646876370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.113 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds