Wall clock time and date at job start Sat Apr 11 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47457 * 240.00146 * 3 2 1 5 5 H 1.48497 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46922 * 120.00319 * 3 2 1 7 7 C 1.38705 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99918 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.35498 * 117.00435 * 185.06319 * 9 7 2 11 11 C 1.38837 * 120.16548 * 354.39636 * 10 9 7 12 12 C 1.38024 * 120.08128 * 180.27880 * 11 10 9 13 13 C 1.38590 * 120.41125 * 359.74573 * 12 11 10 14 14 C 1.37814 * 120.32929 * 359.97438 * 13 12 11 15 15 C 1.39723 * 119.91613 * 0.02562 * 14 13 12 16 16 C 1.47393 * 120.20346 * 179.97438 * 15 14 13 17 17 O 1.21511 * 120.00063 * 179.97438 * 16 15 14 18 18 O 1.34759 * 119.99795 * 359.97438 * 16 15 14 19 19 C 1.45206 * 116.99551 * 180.02562 * 18 16 15 20 20 C 1.52582 * 109.24332 * 89.44555 * 19 18 16 21 21 C 1.52969 * 110.02440 * 190.29182 * 20 19 18 22 22 S 1.81672 * 108.97032 * 296.31621 * 21 20 19 23 23 O 1.42102 * 108.66281 * 299.97030 * 22 21 20 24 24 O 1.42099 * 108.74711 * 168.66724 * 22 21 20 25 25 C 1.81665 * 101.30858 * 54.29832 * 22 21 20 26 26 C 1.52593 * 109.24039 * 210.55703 * 19 18 16 27 27 H 0.97000 * 119.99175 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.95757 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.79480 * 179.76841 * 12 11 10 30 30 H 1.08000 * 119.83386 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.03613 * 180.02562 * 14 13 12 32 32 H 1.08997 * 109.24136 * 329.99745 * 19 18 16 33 33 H 1.09008 * 109.38364 * 310.40255 * 20 19 18 34 34 H 1.09000 * 109.38895 * 70.08449 * 20 19 18 35 35 H 1.09006 * 109.56009 * 176.47147 * 21 20 19 36 36 H 1.08992 * 109.64416 * 56.21342 * 21 20 19 37 37 H 1.09007 * 109.54886 * 185.84382 * 25 22 21 38 38 H 1.09001 * 109.62800 * 65.60802 * 25 22 21 39 39 H 1.08998 * 109.38662 * 289.91431 * 26 19 18 40 40 H 1.09009 * 109.38290 * 49.69795 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3346 -2.3688 -0.0016 10 6 2.0683 -3.5029 0.1045 11 6 3.4552 -3.4404 0.0910 12 6 4.2009 -4.5973 0.1934 13 6 3.5742 -5.8274 0.3155 14 6 2.1986 -5.9086 0.3365 15 6 1.4303 -4.7461 0.2338 16 6 -0.0413 -4.8256 0.2550 17 8 -0.7059 -3.8123 0.1659 18 8 -0.6497 -6.0222 0.3731 19 6 -2.1017 -6.0249 0.3863 20 6 -2.6174 -6.1471 -1.0445 21 6 -4.1260 -5.8964 -1.0808 22 16 -4.9632 -7.1919 -0.1209 23 8 -4.6638 -8.4536 -0.7021 24 8 -6.3210 -6.8168 0.0654 25 6 -4.1014 -7.0671 1.4734 26 6 -2.5947 -7.1923 1.2365 27 1 -0.4849 0.8401 0.0004 28 1 3.9511 -2.4856 -0.0038 29 1 5.2795 -4.5437 0.1787 30 1 4.1668 -6.7268 0.3945 31 1 1.7152 -6.8696 0.4322 32 1 -2.4587 -5.0900 0.8183 33 1 -2.1145 -5.4131 -1.6742 34 1 -2.4076 -7.1484 -1.4205 35 1 -4.4757 -5.9235 -2.1128 36 1 -4.3459 -4.9212 -0.6467 37 1 -4.4349 -7.8691 2.1321 38 1 -4.3195 -6.1032 1.9331 39 1 -2.3862 -8.1293 0.7201 40 1 -2.0772 -7.1850 2.1958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646876370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:04 Heat of formation + Delta-G solvation = -179.832173 kcal Electronic energy + Delta-G solvation = -27414.269141 eV Core-core repulsion = 23286.469610 eV Total energy + Delta-G solvation = -4127.799531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70337 -40.56432 -38.52337 -38.12045 -37.87060 -37.14161 -36.13031 -34.37368 -32.95066 -32.28536 -30.63368 -28.40335 -27.40490 -25.12912 -24.74605 -23.36208 -22.23660 -21.68125 -19.94346 -19.90805 -19.23013 -18.47274 -18.09312 -17.43243 -17.32729 -17.05469 -16.64799 -16.39151 -16.18136 -15.68771 -15.61874 -15.33025 -15.08794 -14.96570 -14.66813 -14.31462 -14.17490 -13.88970 -13.57912 -13.39044 -13.29821 -13.20063 -13.12480 -12.99366 -12.81113 -12.71259 -12.52955 -12.40666 -12.17612 -12.05209 -11.85422 -11.66352 -11.58180 -11.09420 -11.00253 -10.84911 -9.92341 -9.11661 -8.49276 -6.19885 -1.01070 -0.04386 0.69554 1.33319 1.45268 1.50244 1.57097 1.64181 1.73414 2.13680 2.63534 2.81820 2.94871 3.14551 3.34882 3.38080 3.40520 3.58528 3.68736 3.85334 3.92364 4.08854 4.11549 4.19112 4.31809 4.47574 4.52302 4.56563 4.62720 4.77566 4.79029 4.87567 4.97597 4.99509 5.05504 5.13605 5.40080 5.47387 5.60547 5.67365 5.92465 6.12656 6.89902 6.97966 7.70479 8.70342 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003198 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.128954 B = 8753.709724 C =10452.918147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.017 4.017 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.429 4.429 8 H 0.110 0.890 9 O -0.186 6.186 10 C 0.158 3.842 11 C -0.258 4.258 12 C -0.028 4.028 13 C -0.205 4.205 14 C -0.011 4.011 15 C -0.238 4.238 16 C 0.499 3.501 17 O -0.524 6.524 18 O -0.339 6.339 19 C 0.059 3.941 20 C -0.130 4.130 21 C -0.599 4.599 22 S 2.437 3.563 23 O -0.961 6.961 24 O -0.976 6.976 25 C -0.586 4.586 26 C -0.104 4.104 27 H 0.272 0.728 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.153 0.847 39 H 0.113 0.887 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -15.180 2.506 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.127 0.873 9 O -0.088 6.088 10 C 0.102 3.898 11 C -0.277 4.277 12 C -0.046 4.046 13 C -0.223 4.223 14 C -0.029 4.029 15 C -0.241 4.241 16 C 0.346 3.654 17 O -0.414 6.414 18 O -0.257 6.257 19 C 0.004 3.996 20 C -0.168 4.168 21 C -0.728 4.728 22 S 2.621 3.379 23 O -0.959 6.959 24 O -0.974 6.974 25 C -0.717 4.717 26 C -0.142 4.142 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.176 0.824 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.171 0.829 39 H 0.131 0.869 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.573 -15.261 2.177 15.495 hybrid contribution 0.428 2.031 -0.025 2.076 sum -1.145 -13.230 2.152 13.453 Atomic orbital electron populations 1.70276 1.08283 1.28841 1.46271 1.26711 0.96728 1.02979 0.95265 0.84642 0.77417 0.73913 0.80186 1.17817 1.19880 1.17798 1.22026 0.92867 0.81497 1.54026 0.87277 1.84130 1.35367 1.12253 1.77047 1.19974 0.91792 0.87009 0.90991 1.21298 0.91948 1.01191 1.13296 1.21529 1.00988 0.91103 0.90984 1.21229 0.93763 0.98671 1.08643 1.21432 0.94362 0.95965 0.91177 1.18484 0.88795 0.93312 1.23505 1.21367 0.89609 0.81258 0.73126 1.90989 1.66800 1.36992 1.46639 1.86554 1.22425 1.32213 1.84480 1.23046 0.77878 1.01806 0.96867 1.21642 0.92744 1.05591 0.96843 1.30175 1.05660 1.19546 1.17412 1.07417 0.75268 0.76017 0.79162 1.93548 1.85930 1.39560 1.76824 1.93556 1.33013 1.84671 1.86124 1.30102 1.05567 1.14842 1.21191 1.21316 0.92111 0.97796 1.02995 0.91866 0.85294 0.82404 0.81762 0.82218 0.90280 0.91331 0.86983 0.82780 0.83994 0.80764 0.82884 0.86900 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.97 13.67 21.62 0.30 -55.67 16 2 C -0.02 -0.95 5.49 84.85 0.47 -0.48 16 3 Si 1.02 41.94 29.55 68.60 2.03 43.97 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.43 -24.58 9.49 67.93 0.64 -23.93 16 8 H 0.11 5.56 5.21 -2.91 -0.02 5.55 16 9 O -0.19 -11.17 7.84 1.09 0.01 -11.16 16 10 C 0.16 7.69 6.66 22.92 0.15 7.85 16 11 C -0.26 -10.34 9.16 22.36 0.20 -10.14 16 12 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 13 C -0.20 -5.27 10.02 22.25 0.22 -5.05 16 14 C -0.01 -0.35 9.61 22.53 0.22 -0.13 16 15 C -0.24 -10.04 5.89 -20.00 -0.12 -10.16 16 16 C 0.50 21.63 7.84 70.23 0.55 22.18 16 17 O -0.52 -28.08 14.42 26.80 0.39 -27.69 16 18 O -0.34 -10.91 9.11 -56.70 -0.52 -11.43 16 19 C 0.06 1.53 2.21 30.32 0.07 1.60 16 20 C -0.13 -3.09 5.33 30.45 0.16 -2.92 16 21 C -0.60 -11.30 6.35 71.97 0.46 -10.84 16 22 S 2.44 43.51 5.30 -56.49 -0.30 43.21 16 23 O -0.96 -22.26 17.94 -127.38 -2.28 -24.54 16 24 O -0.98 -24.29 18.11 -127.38 -2.31 -26.60 16 25 C -0.59 -7.24 6.35 71.99 0.46 -6.78 16 26 C -0.10 -1.69 5.37 30.47 0.16 -1.52 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.13 5.18 5.64 -2.91 -0.02 5.16 16 29 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.16 3.75 7.61 -2.91 -0.02 3.73 16 32 H 0.08 2.32 7.10 -2.39 -0.02 2.30 16 33 H 0.07 2.04 8.13 -2.38 -0.02 2.02 16 34 H 0.11 2.19 8.01 -2.39 -0.02 2.17 16 35 H 0.15 2.41 8.14 -2.38 -0.02 2.40 16 36 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.17 1.15 8.14 -2.38 -0.02 1.14 16 38 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 1.51 8.01 -2.39 -0.02 1.49 16 40 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -88.99 351.90 2.26 -86.73 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.08 Total: 24.08 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 3.87 Total: -40.91 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.30 Total: -55.67 kcal Atomic # 8 Polarization: -96.70 SS G_CDS: -4.71 Total: -101.41 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 43.51 SS G_CDS: -0.30 Total: 43.21 kcal Total: -88.99 2.26 -86.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646876370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.100 kcal (2) G-P(sol) polarization free energy of solvation -88.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds