Wall clock time and date at job start Sat Apr 11 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99700 * 2 1 4 4 H 1.48501 * 109.47166 * 240.00270 * 3 2 1 5 5 H 1.48505 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47201 * 120.00244 * 3 2 1 7 7 C 1.38798 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99685 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00040 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47113 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99960 * 180.27259 * 11 10 9 14 14 C 1.46505 * 119.99901 * 179.72549 * 13 11 10 15 15 H 1.08990 * 112.85090 * 46.03469 * 14 13 11 16 16 C 1.53787 * 113.61101 * 177.33957 * 14 13 11 17 17 C 1.53785 * 87.07844 * 89.11764 * 16 14 13 18 18 H 1.08994 * 113.68722 * 139.99147 * 17 16 14 19 19 N 1.46507 * 113.61135 * 270.87872 * 17 16 14 20 20 C 1.34773 * 119.99917 * 255.64328 * 19 17 16 21 21 O 1.21636 * 120.00627 * 0.02562 * 20 19 17 22 22 C 1.47194 * 119.99605 * 180.02562 * 20 19 17 23 23 C 1.44424 * 123.45833 * 179.73030 * 22 20 19 24 24 C 1.32776 * 113.08051 * 179.80860 * 23 22 20 25 25 S 1.75506 * 110.57570 * 0.44077 * 24 23 22 26 26 C 1.36003 * 123.46217 * 0.02575 * 22 20 19 27 27 C 1.53778 * 87.08327 * 25.42865 * 17 16 14 28 28 H 0.96999 * 120.00464 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47403 * 60.00103 * 10 9 7 30 30 H 1.09004 * 109.46902 * 300.00344 * 10 9 7 31 31 H 0.97004 * 119.99823 * 359.72998 * 13 11 10 32 32 H 1.09001 * 113.60901 * 203.66387 * 16 14 13 33 33 H 1.08996 * 113.61292 * 334.56957 * 16 14 13 34 34 H 0.97000 * 119.99579 * 75.64846 * 19 17 16 35 35 H 1.08003 * 123.45771 * 0.02562 * 23 22 20 36 36 H 1.07999 * 124.71077 * 180.18062 * 24 23 22 37 37 H 1.08007 * 124.59543 * 0.02562 * 26 22 20 38 38 H 1.09000 * 113.61691 * 220.01485 * 27 17 16 39 39 H 1.09008 * 113.60863 * 89.11433 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3430 0.0043 14 6 2.3306 -7.7150 0.0097 15 1 1.5299 -7.8701 -0.7133 16 6 3.4328 -8.7858 -0.0498 17 6 3.4583 -8.7325 1.4869 18 1 3.5687 -9.7096 1.9571 19 7 4.3864 -7.7344 2.0242 20 6 5.5629 -8.1243 2.5537 21 8 5.8543 -9.3048 2.5851 22 6 6.4951 -7.1215 3.0940 23 6 7.7708 -7.4559 3.6827 24 6 8.4466 -6.3917 4.0996 25 16 7.5338 -4.9237 3.7964 26 6 6.2411 -5.7854 3.0954 27 6 2.0019 -8.2441 1.4157 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7313 0.8895 30 1 3.1246 -3.7312 -0.8905 31 1 3.8011 -6.1834 0.0046 32 1 3.0920 -9.7415 -0.4480 33 1 4.3553 -8.4373 -0.5141 34 1 4.1542 -6.7930 1.9988 35 1 8.1389 -8.4673 3.7713 36 1 9.4207 -6.4252 4.5647 37 1 5.3416 -5.3318 2.7058 38 1 1.7691 -7.4585 2.1346 39 1 1.2699 -9.0518 1.4182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703930069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:30 Heat of formation + Delta-G solvation = -40.186457 kcal Electronic energy + Delta-G solvation = -24028.685981 eV Core-core repulsion = 20381.987565 eV Total energy + Delta-G solvation = -3646.698416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82461 -40.55032 -39.14311 -37.67449 -34.94059 -34.56716 -33.90613 -30.90050 -30.44019 -27.66542 -26.82572 -26.48968 -25.03527 -22.84637 -21.68137 -20.94956 -20.16384 -19.79401 -18.92976 -18.24499 -17.75648 -17.23592 -16.86255 -16.81817 -16.61874 -16.14629 -15.89347 -15.75981 -15.42002 -14.77104 -14.52369 -14.32034 -14.00530 -13.89699 -13.79177 -13.46652 -13.37653 -13.23720 -13.15177 -12.95509 -12.85504 -12.60387 -12.07549 -12.05297 -11.75074 -11.44514 -11.11379 -11.04970 -10.93379 -10.30572 -10.25551 -10.08009 -9.99307 -9.39793 -8.64688 -8.33199 -6.10839 -0.24959 0.60356 0.96877 0.97793 1.27222 1.44817 1.47769 1.56550 1.58568 2.00016 2.24776 2.27923 2.30347 3.01376 3.32103 3.36925 3.54983 3.72842 3.82671 3.92088 3.99220 4.09851 4.28308 4.30119 4.42770 4.50641 4.65766 4.74564 4.77561 4.81226 4.84409 4.97223 4.98962 5.13211 5.24873 5.34125 5.43339 5.62727 6.20922 6.37333 6.44398 7.08554 7.08572 7.21428 8.75527 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003317 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.185463 B = 8438.171133 C =11137.564187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.148 6.148 10 C -0.133 4.133 11 C 0.537 3.463 12 O -0.556 6.556 13 N -0.702 5.702 14 C 0.114 3.886 15 H 0.087 0.913 16 C -0.134 4.134 17 C 0.119 3.881 18 H 0.102 0.898 19 N -0.702 5.702 20 C 0.581 3.419 21 O -0.573 6.573 22 C -0.180 4.180 23 C -0.108 4.108 24 C -0.231 4.231 25 S 0.230 5.770 26 C -0.215 4.215 27 C -0.150 4.150 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.410 0.590 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.405 0.595 35 H 0.150 0.850 36 H 0.195 0.805 37 H 0.181 0.819 38 H 0.061 0.939 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.998 -15.235 6.064 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.284 4.284 11 C 0.323 3.677 12 O -0.433 6.433 13 N -0.357 5.357 14 C 0.009 3.991 15 H 0.105 0.895 16 C -0.173 4.173 17 C 0.013 3.987 18 H 0.120 0.880 19 N -0.353 5.353 20 C 0.368 3.632 21 O -0.454 6.454 22 C -0.199 4.199 23 C -0.136 4.136 24 C -0.366 4.366 25 S 0.496 5.504 26 C -0.354 4.354 27 C -0.189 4.189 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.248 0.752 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.242 0.758 35 H 0.168 0.832 36 H 0.212 0.788 37 H 0.199 0.801 38 H 0.080 0.920 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.342 -14.785 6.359 22.937 hybrid contribution 1.211 0.223 -0.366 1.285 sum 17.553 -14.562 5.993 23.581 Atomic orbital electron populations 1.70171 1.07984 1.28628 1.48036 1.26083 0.95882 1.03232 0.93783 0.85055 0.77850 0.75888 0.79551 1.18749 1.20678 1.18446 1.23181 0.95398 0.92011 1.58819 0.89747 1.85625 1.10299 0.99088 1.97047 1.23403 1.03740 0.94299 1.06946 1.20062 0.86253 0.86431 0.74933 1.90712 1.17238 1.85959 1.49353 1.45621 1.09774 1.04525 1.75734 1.22012 0.98129 0.80778 0.98175 0.89539 1.23705 0.98322 0.99677 0.95572 1.21982 0.88739 0.92933 0.95010 0.87998 1.45654 1.17755 1.10932 1.60994 1.17874 0.81177 0.87587 0.76532 1.90758 1.76609 1.19163 1.58836 1.20270 0.97931 0.92551 1.09148 1.21189 0.92456 1.00886 0.99119 1.25896 1.06249 0.95408 1.09038 1.83263 1.06301 1.07975 1.52830 1.25983 1.06385 0.97557 1.05462 1.23760 0.96166 1.01945 0.97078 0.92059 0.86771 0.87329 0.75234 0.85189 0.90072 0.75806 0.83238 0.78770 0.80149 0.92025 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.75 13.22 21.65 0.29 -54.47 16 2 C 0.02 0.83 5.49 84.86 0.47 1.30 16 3 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -29.87 9.50 67.95 0.65 -29.22 16 8 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 9 S -0.15 -7.80 20.57 -56.49 -1.16 -8.97 16 10 C -0.13 -4.76 6.16 71.23 0.44 -4.32 16 11 C 0.54 17.82 7.85 87.65 0.69 18.50 16 12 O -0.56 -23.81 15.80 -3.04 -0.05 -23.86 16 13 N -0.70 -15.42 4.34 -440.03 -1.91 -17.33 16 14 C 0.11 2.23 4.00 45.52 0.18 2.41 16 15 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 16 C -0.13 -1.91 7.57 31.12 0.24 -1.67 16 17 C 0.12 2.04 4.28 45.52 0.19 2.24 16 18 H 0.10 1.90 7.54 -2.39 -0.02 1.89 16 19 N -0.70 -12.80 4.93 -443.51 -2.19 -14.99 16 20 C 0.58 13.08 7.79 86.60 0.67 13.75 16 21 O -0.57 -16.62 16.44 -4.15 -0.07 -16.68 16 22 C -0.18 -3.47 5.98 -19.87 -0.12 -3.59 16 23 C -0.11 -1.88 10.10 22.67 0.23 -1.65 16 24 C -0.23 -2.92 11.12 66.64 0.74 -2.18 16 25 S 0.23 2.92 23.02 -56.49 -1.30 1.62 16 26 C -0.22 -3.34 10.38 67.30 0.70 -2.64 16 27 C -0.15 -2.76 7.61 31.12 0.24 -2.52 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.41 6.70 7.83 -92.71 -0.73 5.97 16 32 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.40 6.54 5.69 -92.71 -0.53 6.01 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.18 2.25 7.01 -2.91 -0.02 2.23 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -78.35 364.21 0.81 -77.55 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.15 Total: 22.60 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.31 Total: -9.59 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.81 Total: -86.78 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.12 Total: -40.55 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.46 Total: -7.35 kcal Total: -78.35 0.81 -77.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703930069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds