Wall clock time and date at job start Sat Apr 11 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48495 * 109.46880 * 239.99821 * 3 2 1 5 5 H 1.48497 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46692 * 119.99971 * 3 2 1 7 7 C 1.38808 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00115 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.31000 * 119.99705 * 127.01050 * 11 10 9 13 13 C 1.50700 * 120.00198 * 7.55522 * 12 11 10 14 14 N 1.46496 * 109.47180 * 127.15866 * 13 12 11 15 15 C 1.34781 * 120.00602 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99202 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00553 * 179.97438 * 15 14 13 18 18 H 1.09004 * 115.56036 * 34.30744 * 17 15 14 19 19 C 1.52994 * 117.50072 * 248.62649 * 17 15 14 20 20 C 1.52991 * 117.50247 * 179.97438 * 17 15 14 21 21 H 1.08999 * 117.49692 * 0.02562 * 20 17 15 22 22 C 1.50694 * 117.50441 * 214.97856 * 20 17 15 23 23 C 1.33352 * 125.18694 * 119.70639 * 22 20 17 24 24 C 1.38471 * 114.92655 * 179.80114 * 23 22 20 25 25 C 1.33503 * 114.88587 * 0.49225 * 24 23 22 26 26 Cl 1.73601 * 125.21127 * 179.71553 * 25 24 23 27 27 S 1.75877 * 125.19042 * 300.01667 * 22 20 17 28 28 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99695 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46965 * 60.00186 * 10 9 7 31 31 H 1.08995 * 109.47692 * 300.00129 * 10 9 7 32 32 H 1.07992 * 120.00054 * 307.00642 * 11 10 9 33 33 H 1.07997 * 120.00046 * 187.56188 * 12 11 10 34 34 H 1.09001 * 109.47064 * 7.16220 * 13 12 11 35 35 H 1.08999 * 109.47431 * 247.16005 * 13 12 11 36 36 H 0.97007 * 120.00193 * 359.97438 * 14 13 12 37 37 H 1.08994 * 117.50648 * 145.02060 * 19 17 15 38 38 H 1.09002 * 117.50052 * 359.97438 * 19 17 15 39 39 H 1.07999 * 122.53742 * 359.97438 * 23 22 20 40 40 H 1.08006 * 122.56130 * 180.23158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0788 -4.8023 -0.0031 12 6 1.1720 -5.7433 -0.9097 13 6 2.3536 -5.7747 -1.8445 14 7 2.9753 -7.1005 -1.8014 15 6 4.0572 -7.3627 -2.5612 16 8 4.5157 -6.5010 -3.2811 17 6 4.6970 -8.7263 -2.5163 18 1 4.0127 -9.5624 -2.3716 19 6 6.0871 -8.8340 -1.8863 20 6 5.9218 -8.9615 -3.4025 21 1 6.2650 -8.1298 -4.0177 22 6 6.0900 -10.3312 -4.0080 23 6 6.1358 -10.5934 -5.3147 24 6 6.3013 -11.9300 -5.6363 25 6 6.3794 -12.7543 -4.5890 26 17 6.5792 -14.4762 -4.6831 27 16 6.2480 -11.8287 -3.0992 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 -0.0023 30 1 2.6848 -3.7153 0.8872 31 1 2.6849 -3.7138 -0.8927 32 1 0.3004 -4.8474 0.7440 33 1 0.4019 -6.4965 -0.9873 34 1 3.0802 -5.0226 -1.5372 35 1 2.0192 -5.5631 -2.8602 36 1 2.6087 -7.7896 -1.2253 37 1 6.3174 -9.7409 -1.3273 38 1 6.5390 -7.9185 -1.5047 39 1 6.0532 -9.8213 -6.0653 40 1 6.3584 -12.2797 -6.6565 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715869394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:45 Heat of formation + Delta-G solvation = 51.091819 kcal Electronic energy + Delta-G solvation = -22515.906969 eV Core-core repulsion = 18871.122970 eV Total energy + Delta-G solvation = -3644.783999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.26228 -38.63159 -37.43607 -36.79150 -36.15340 -34.52858 -32.85018 -30.50036 -29.83932 -27.15218 -25.30623 -24.76640 -23.58375 -22.49722 -22.24918 -20.38479 -20.06043 -18.73354 -18.04832 -17.38913 -16.78203 -16.31890 -16.16930 -15.60519 -15.00672 -14.55584 -14.46011 -14.25707 -14.05443 -13.71763 -13.53689 -13.27977 -13.19854 -12.85870 -12.66082 -12.53553 -12.44261 -12.33356 -11.76229 -11.55530 -11.22071 -11.04746 -10.95923 -10.94979 -10.79095 -10.46385 -10.07705 -10.06637 -9.78406 -9.22006 -9.06028 -9.03893 -8.90197 -8.62440 -6.93322 -5.77603 -3.07047 0.25892 0.58228 1.29619 1.74576 2.04185 2.21944 2.38002 3.18629 3.45111 3.48066 3.49111 3.50525 4.02652 4.24224 4.39366 4.60862 4.72779 4.77255 4.80332 4.96373 5.00101 5.19952 5.26997 5.41022 5.48040 5.55245 5.62976 5.66004 5.66097 5.84447 5.85688 5.94311 6.21815 6.29105 6.51553 6.55360 6.84740 7.11430 7.42377 7.68922 8.12385 8.40752 9.52088 10.07726 10.43066 11.45022 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.001519 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.570331 B =18431.901013 C =18825.283551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.161 3.839 11 C -0.108 4.108 12 C -0.200 4.200 13 C 0.140 3.860 14 N -0.717 5.717 15 C 0.540 3.460 16 O -0.536 6.536 17 C -0.173 4.173 18 H 0.127 0.873 19 C -0.142 4.142 20 C -0.057 4.057 21 H 0.142 0.858 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.156 4.156 26 Cl -0.016 7.016 27 S 0.152 5.848 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 -31.257 -7.442 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.127 4.127 12 C -0.220 4.220 13 C 0.018 3.982 14 N -0.368 5.368 15 C 0.325 3.675 16 O -0.413 6.413 17 C -0.195 4.195 18 H 0.145 0.855 19 C -0.180 4.180 20 C -0.077 4.077 21 H 0.160 0.840 22 C -0.254 4.254 23 C -0.156 4.156 24 C -0.145 4.145 25 C -0.299 4.299 26 Cl 0.013 6.987 27 S 0.415 5.585 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.169 0.831 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.595 -31.035 -6.448 34.108 hybrid contribution -0.309 0.627 -1.254 1.436 sum 12.286 -30.408 -7.702 33.689 Atomic orbital electron populations 1.69657 1.05138 1.25853 1.57487 1.24755 0.95557 0.97747 1.02789 0.86233 0.78514 0.83318 0.77921 1.21157 1.21631 1.21209 1.19204 0.91077 0.83999 1.43107 0.91106 1.42259 1.05893 0.99478 1.89548 1.20011 0.92994 0.84785 0.98738 1.23306 0.99038 0.94704 0.95676 1.22579 0.98849 1.02208 0.98350 1.20592 0.94110 0.83814 0.99649 1.45944 1.30352 1.15477 1.44989 1.19462 0.80219 0.88000 0.79813 1.90741 1.62894 1.47557 1.40120 1.22431 0.92351 0.97578 1.07166 0.85527 1.23177 0.95901 1.04705 0.94210 1.20525 1.00450 0.93043 0.93688 0.84012 1.23855 1.08279 0.96665 0.96620 1.19976 1.03652 0.96342 0.95641 1.20212 1.02211 0.92257 0.99806 1.25248 1.15750 0.90142 0.98759 1.98375 1.95925 1.06435 1.97997 1.84348 1.72013 0.96147 1.05945 0.93415 0.78154 0.95423 0.94693 0.86854 0.87031 0.89218 0.91001 0.76581 0.87652 0.86700 0.83064 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.67 5.59 -61.09 -0.34 -19.02 16 10 C 0.16 3.25 6.35 -5.19 -0.03 3.22 16 11 C -0.11 -1.71 9.63 -36.02 -0.35 -2.05 16 12 C -0.20 -2.63 9.63 -36.03 -0.35 -2.98 16 13 C 0.14 1.93 5.76 -5.20 -0.03 1.90 16 14 N -0.72 -7.76 5.55 -61.48 -0.34 -8.11 16 15 C 0.54 6.42 7.61 -10.99 -0.08 6.34 16 16 O -0.54 -8.66 16.26 5.55 0.09 -8.57 16 17 C -0.17 -1.42 5.89 -91.78 -0.54 -1.96 16 18 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.14 -1.01 9.75 -26.71 -0.26 -1.27 16 20 C -0.06 -0.46 5.73 -91.75 -0.53 -0.99 16 21 H 0.14 1.31 7.67 -51.93 -0.40 0.91 16 22 C -0.14 -1.04 6.14 -36.02 -0.22 -1.26 16 23 C -0.13 -0.92 10.05 -41.20 -0.41 -1.33 16 24 C -0.11 -0.78 10.13 -41.15 -0.42 -1.20 16 25 C -0.16 -1.16 7.10 29.08 0.21 -0.95 16 26 Cl -0.02 -0.11 29.29 -51.86 -1.52 -1.63 16 27 S 0.15 1.05 22.16 -107.50 -2.38 -1.33 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.38 10.33 7.66 -40.82 -0.31 10.01 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.72 5.30 -51.93 -0.28 0.44 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.09 1.44 5.30 -51.93 -0.28 1.17 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.40 3.11 8.46 -40.82 -0.35 2.77 16 37 H 0.11 0.58 7.27 -51.93 -0.38 0.21 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.02 374.61 -11.32 -44.34 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.91 Total: 8.79 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.26 Total: -10.04 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.04 Total: -54.77 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.38 Total: -1.33 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.02 -11.32 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715869394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.431 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds