Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48499 * 109.47162 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.47106 * 30.00037 * 3 2 1 6 6 H 1.48502 * 109.47103 * 150.00006 * 3 2 1 7 7 C 1.38817 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99847 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99866 * 179.97438 * 7 2 1 10 10 C 1.46492 * 119.99706 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46963 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.46500 * 120.00060 * 269.99895 * 12 11 10 14 14 C 1.52996 * 109.47211 * 262.57289 * 13 12 11 15 15 O 1.42899 * 109.47105 * 65.00023 * 14 13 12 16 16 C 1.34784 * 119.99994 * 89.99731 * 12 11 10 17 17 O 1.21697 * 119.99839 * 2.52604 * 16 12 11 18 18 C 1.46681 * 119.99993 * 182.51819 * 16 12 11 19 19 C 1.34405 * 126.63338 * 172.52621 * 18 16 12 20 20 C 1.46368 * 118.09194 * 179.97438 * 19 18 16 21 21 C 1.38767 * 135.98029 * 179.97438 * 20 19 18 22 22 S 1.69811 * 111.84979 * 180.02562 * 21 20 19 23 23 C 1.75138 * 92.62996 * 0.02562 * 22 21 20 24 24 C 1.34263 * 110.72660 * 359.97438 * 23 22 21 25 25 S 1.77060 * 126.63460 * 352.46859 * 18 16 12 26 26 H 0.97000 * 119.99916 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99812 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46863 * 60.00891 * 10 9 7 29 29 H 1.08998 * 109.47609 * 300.00437 * 10 9 7 30 30 H 1.08997 * 109.47617 * 60.00679 * 11 10 9 31 31 H 1.09003 * 109.47408 * 300.00385 * 11 10 9 32 32 H 1.08995 * 109.46708 * 22.57994 * 13 12 11 33 33 H 1.08999 * 109.46681 * 142.57454 * 13 12 11 34 34 H 1.08993 * 109.47243 * 184.99784 * 14 13 12 35 35 H 1.09001 * 109.47492 * 305.00524 * 14 13 12 36 36 H 0.96695 * 114.00768 * 179.97438 * 15 14 13 37 37 H 1.08008 * 120.95250 * 359.97438 * 19 18 16 38 38 H 1.08005 * 124.07699 * 359.74363 * 21 20 19 39 39 H 1.07992 * 124.64169 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0009 12 7 6.3489 -3.4600 0.0014 13 6 6.7153 -4.0938 1.2704 14 6 8.1623 -3.7391 1.6185 15 8 8.2646 -2.3335 1.8546 16 6 6.6857 -4.0442 -1.1656 17 8 6.4220 -3.4953 -2.2192 18 6 7.3703 -5.3415 -1.1657 19 6 7.6410 -6.1054 -2.2379 20 6 8.3379 -7.3742 -2.0219 21 6 8.7877 -8.4145 -2.8226 22 16 9.5431 -9.6322 -1.9115 23 6 9.2793 -8.7801 -0.4043 24 6 8.6403 -7.6192 -0.6202 25 16 8.0011 -6.2033 0.2465 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3621 -0.0004 28 1 3.8485 -3.0433 -0.8882 29 1 3.8491 -3.0415 0.8918 30 1 5.8798 -1.6190 0.8904 31 1 5.8797 -1.6204 -0.8896 32 1 6.0536 -3.7364 2.0593 33 1 6.6186 -5.1755 1.1774 34 1 8.4636 -4.2809 2.5150 35 1 8.8139 -4.0167 0.7900 36 1 9.1564 -2.0366 2.0816 37 1 7.3525 -5.7919 -3.2304 38 1 8.6674 -8.4481 -3.8954 39 1 9.5891 -9.1389 0.5661 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733620270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -21.927687 kcal Electronic energy + Delta-G solvation = -24313.140281 eV Core-core repulsion = 20667.233625 eV Total energy + Delta-G solvation = -3645.906656 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29918 -39.18457 -38.18718 -37.28943 -36.04835 -34.40005 -33.61467 -31.27611 -30.29371 -29.36129 -26.93013 -25.08703 -24.25196 -23.62158 -22.96035 -20.97443 -19.99308 -19.74864 -19.14064 -18.51132 -18.29052 -17.53437 -17.06452 -16.60114 -16.47135 -15.77771 -15.67298 -15.57894 -15.39511 -14.92547 -14.76943 -14.69945 -14.65685 -14.19126 -13.88365 -13.71874 -13.46654 -13.10528 -13.03203 -12.94115 -12.61286 -12.36273 -12.25685 -12.11137 -12.00464 -11.84354 -11.36154 -11.23913 -11.04223 -10.95632 -10.66322 -9.93386 -9.39079 -9.18099 -8.46082 -8.06511 -5.42538 -0.87211 -0.04805 0.34488 0.55342 0.83181 1.31817 1.37142 1.40157 1.41946 1.48770 1.70350 2.00640 2.46478 3.13210 3.24411 3.27114 3.56709 3.68607 3.87332 3.95554 4.08210 4.15883 4.23308 4.27043 4.38502 4.46882 4.50281 4.57654 4.64196 4.74531 4.78612 4.94968 4.97117 5.01353 5.06431 5.32903 5.69018 6.12926 6.16203 6.83772 6.93758 7.01450 7.74238 7.96184 9.14734 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002573 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.146995 B =10879.840085 C =11578.628692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.247 1.247 7 C -0.242 4.242 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.127 3.873 12 N -0.587 5.587 13 C 0.085 3.915 14 C 0.058 3.942 15 O -0.587 6.587 16 C 0.586 3.414 17 O -0.568 6.568 18 C -0.226 4.226 19 C -0.020 4.020 20 C -0.158 4.158 21 C -0.223 4.223 22 S 0.340 5.660 23 C -0.215 4.215 24 C -0.184 4.184 25 S 0.125 5.875 26 H 0.260 0.740 27 H 0.369 0.631 28 H 0.005 0.995 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.139 0.861 38 H 0.189 0.811 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.394 -22.729 2.710 38.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.171 1.171 7 C -0.373 4.373 8 H 0.071 0.929 9 N -0.400 5.400 10 C 0.022 3.978 11 C 0.004 3.996 12 N -0.317 5.317 13 C -0.039 4.039 14 C -0.021 4.021 15 O -0.396 6.396 16 C 0.374 3.626 17 O -0.449 6.449 18 C -0.345 4.345 19 C -0.054 4.054 20 C -0.175 4.175 21 C -0.364 4.364 22 S 0.610 5.390 23 C -0.359 4.359 24 C -0.305 4.305 25 S 0.382 5.618 26 H 0.069 0.931 27 H 0.202 0.798 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.157 0.843 38 H 0.206 0.794 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 30.125 -23.662 3.050 38.428 hybrid contribution -0.597 2.260 -1.443 2.747 sum 29.529 -21.402 1.607 36.504 Atomic orbital electron populations 1.69888 1.07152 1.26970 1.59126 1.25564 0.96249 1.01496 1.02003 0.85357 0.78891 0.79083 0.78183 1.20632 1.21487 1.17099 1.18976 0.82321 0.93621 1.42343 0.92890 1.42481 1.02689 1.03710 1.91114 1.20960 0.90985 0.87955 0.97917 1.21431 0.89520 0.84720 1.03915 1.47577 1.54938 1.23240 1.05917 1.22443 0.97847 0.98149 0.85451 1.22934 0.94955 0.82830 1.01405 1.86492 1.36726 1.23309 1.93029 1.17263 0.77996 0.83633 0.83704 1.90837 1.56686 1.65085 1.32267 1.23527 1.11543 0.99844 0.99543 1.21370 0.93415 0.90955 0.99681 1.20479 1.07626 0.96669 0.92704 1.26145 1.04941 0.99012 1.06293 1.82508 1.48261 1.16285 0.91989 1.25184 1.08026 0.97496 1.05210 1.23936 1.06772 1.01999 0.97822 1.84342 1.62150 1.10723 1.04563 0.93075 0.79784 0.97642 0.94746 0.87787 0.91206 0.87126 0.87090 0.88724 0.92676 0.75328 0.84318 0.79413 0.78627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.11 13.97 21.65 0.30 -64.81 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.96 47.30 27.74 68.60 1.90 49.21 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 7 C -0.24 -14.78 10.47 84.03 0.88 -13.90 16 8 H 0.05 3.54 8.06 -2.91 -0.02 3.52 16 9 N -0.75 -38.54 5.41 -343.46 -1.86 -40.40 16 10 C 0.15 6.49 6.58 86.38 0.57 7.06 16 11 C 0.13 4.50 5.51 86.38 0.48 4.98 16 12 N -0.59 -17.75 2.44 -826.51 -2.02 -19.76 16 13 C 0.09 1.84 5.34 86.38 0.46 2.30 16 14 C 0.06 0.95 5.97 71.98 0.43 1.38 16 15 O -0.59 -11.09 13.39 -148.98 -2.00 -13.08 16 16 C 0.59 19.64 7.57 86.45 0.65 20.30 16 17 O -0.57 -23.82 16.43 -4.34 -0.07 -23.90 16 18 C -0.23 -6.01 6.07 23.60 0.14 -5.87 16 19 C -0.02 -0.49 10.01 23.51 0.24 -0.26 16 20 C -0.16 -3.13 6.54 -19.17 -0.13 -3.25 16 21 C -0.22 -2.93 11.02 67.95 0.75 -2.18 16 22 S 0.34 2.46 22.97 -56.49 -1.30 1.17 16 23 C -0.21 -2.34 11.15 66.91 0.75 -1.60 16 24 C -0.18 -3.20 7.19 23.23 0.17 -3.03 16 25 S 0.13 2.30 15.70 -56.49 -0.89 1.42 16 26 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 27 H 0.37 17.72 5.53 -92.71 -0.51 17.21 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 3.36 7.86 -2.39 -0.02 3.34 16 31 H 0.07 2.71 7.39 -2.39 -0.02 2.69 16 32 H 0.11 2.32 8.02 -2.39 -0.02 2.30 16 33 H 0.11 2.14 4.46 -20.82 -0.09 2.04 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.95 6.34 -2.43 -0.02 0.94 16 36 H 0.40 3.84 9.12 -74.06 -0.68 3.16 16 37 H 0.14 3.58 8.03 -2.91 -0.02 3.55 16 38 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -84.28 351.37 -0.28 -84.56 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.21 Total: 23.00 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.85 Total: 2.60 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -3.57 Total: -124.97 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -2.07 Total: -36.98 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.90 Total: 49.21 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.18 Total: 2.58 kcal Total: -84.28 -0.28 -84.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733620270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.635 kcal (2) G-P(sol) polarization free energy of solvation -84.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds