Wall clock time and date at job start Sat Apr 11 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99502 * 2 1 4 4 H 1.48504 * 109.46860 * 239.99607 * 3 2 1 5 5 H 1.48496 * 109.47570 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47118 * 119.99835 * 3 2 1 7 7 C 1.37868 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46991 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99998 * 274.99918 * 10 9 7 12 12 C 1.52996 * 109.47146 * 276.03206 * 11 10 9 13 13 C 1.53002 * 117.49982 * 243.74496 * 12 11 10 14 14 C 1.53004 * 117.49593 * 175.08473 * 12 11 10 15 15 S 1.65600 * 120.00324 * 95.00145 * 10 9 7 16 16 O 1.42097 * 106.40372 * 152.91170 * 15 10 9 17 17 O 1.42098 * 106.39910 * 19.99007 * 15 10 9 18 18 C 1.76198 * 107.21819 * 266.45309 * 15 10 9 19 19 C 1.38254 * 119.99934 * 348.94668 * 18 15 10 20 20 C 1.38220 * 120.00116 * 179.97438 * 19 18 15 21 21 C 1.38253 * 119.99678 * 359.97438 * 20 19 18 22 22 C 1.38211 * 120.00238 * 359.97438 * 21 20 19 23 23 C 1.38216 * 120.00047 * 168.83410 * 18 15 10 24 24 N 1.48016 * 120.00122 * 0.09240 * 23 18 15 25 25 O 1.21797 * 120.00201 * 187.18431 * 24 23 18 26 26 O 1.21807 * 120.00022 * 7.17668 * 24 23 18 27 27 H 0.97001 * 120.00209 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47097 * 60.00196 * 9 7 2 29 29 H 1.08996 * 109.47352 * 299.99835 * 9 7 2 30 30 H 1.09003 * 109.46932 * 36.03478 * 11 10 9 31 31 H 1.09007 * 109.47027 * 156.03323 * 11 10 9 32 32 H 1.08998 * 115.54854 * 29.42268 * 12 11 10 33 33 H 1.08999 * 117.49758 * 0.02562 * 13 12 11 34 34 H 1.08998 * 117.49702 * 145.02912 * 13 12 11 35 35 H 1.09007 * 117.49690 * 214.98002 * 14 12 11 36 36 H 1.09001 * 117.50272 * 0.02562 * 14 12 11 37 37 H 1.07999 * 120.00393 * 0.26005 * 19 18 15 38 38 H 1.07997 * 120.00044 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99882 * 179.97438 * 21 20 19 40 40 H 1.08007 * 119.99754 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 2.7632 -4.0974 -1.2634 12 6 1.7917 -5.0908 -1.9039 13 6 2.2656 -6.5363 -2.0684 14 6 2.1430 -5.6265 -3.2934 15 16 2.6462 -4.3232 1.4292 16 8 3.0068 -5.6616 1.1167 17 8 1.6373 -3.9901 2.3728 18 6 4.1197 -3.5251 1.9737 19 6 4.7989 -2.6726 1.1232 20 6 5.9545 -2.0462 1.5505 21 6 6.4308 -2.2716 2.8286 22 6 5.7513 -3.1230 3.6793 23 6 4.5952 -3.7495 3.2519 24 7 3.8679 -4.6618 4.1627 25 8 4.2097 -4.7595 5.3276 26 8 2.9273 -5.3148 3.7472 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.9196 -3.2557 -1.9381 31 1 3.7156 -4.5922 -1.0727 32 1 0.7376 -4.9293 -1.6785 33 1 3.2693 -6.7796 -1.7199 34 1 1.5231 -7.3257 -1.9517 35 1 1.3199 -5.8178 -3.9819 36 1 3.0664 -5.2715 -3.7510 37 1 4.4241 -2.4926 0.1264 38 1 6.4853 -1.3806 0.8859 39 1 7.3340 -1.7824 3.1624 40 1 6.1237 -3.2994 4.6776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264124807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:13 Heat of formation + Delta-G solvation = -30.166406 kcal Electronic energy + Delta-G solvation = -28937.677965 eV Core-core repulsion = 24848.661181 eV Total energy + Delta-G solvation = -4089.016785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.65750 -40.48312 -38.97236 -38.25500 -38.12963 -36.85695 -36.52877 -34.42359 -33.32374 -32.76739 -29.70186 -27.96539 -27.14749 -24.72255 -24.68843 -23.67856 -23.11889 -21.63885 -21.17760 -20.17943 -19.73652 -19.02596 -18.78879 -18.63218 -18.22432 -17.39005 -16.60464 -16.50884 -16.36386 -16.05553 -15.82314 -15.32232 -15.11368 -14.53292 -14.41376 -14.09727 -13.92710 -13.53292 -13.28710 -13.21861 -13.12845 -13.06020 -12.93288 -12.91637 -12.66008 -12.59255 -12.47082 -12.34139 -12.27807 -12.06239 -11.97797 -11.74453 -11.22161 -10.89974 -10.77373 -10.70995 -10.57847 -9.90620 -8.18141 -6.33971 -1.62885 -0.76418 -0.45866 0.00326 0.08439 1.42217 1.45485 1.52798 1.87552 2.02655 2.41400 2.61219 2.95442 3.11980 3.15146 3.44751 3.53548 3.76153 3.81287 3.83946 3.85058 3.99769 4.08568 4.30088 4.31112 4.37881 4.42947 4.76087 4.79028 4.85859 4.86202 4.88796 4.98827 5.08595 5.26029 5.31328 5.32677 5.34863 5.42601 5.70649 5.85202 6.03720 6.12170 6.76404 7.36692 8.90667 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008423 B = 0.006731 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.395441 B = 4158.888468 C = 5952.378966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.250 1.250 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.088 0.912 9 C 0.257 3.743 10 N -0.980 5.980 11 C 0.151 3.849 12 C -0.200 4.200 13 C -0.180 4.180 14 C -0.148 4.148 15 S 2.697 3.303 16 O -0.967 6.967 17 O -0.987 6.987 18 C -0.641 4.641 19 C -0.030 4.030 20 C -0.070 4.070 21 C -0.054 4.054 22 C -0.060 4.060 23 C 0.000 4.000 24 N 0.013 4.987 25 O -0.077 6.077 26 O -0.253 6.253 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.010 0.990 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.168 0.832 38 H 0.200 0.800 39 H 0.214 0.786 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.565 -2.615 -2.050 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.174 1.174 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.106 0.894 9 C 0.134 3.866 10 N -0.820 5.820 11 C 0.026 3.974 12 C -0.220 4.220 13 C -0.217 4.217 14 C -0.185 4.185 15 S 2.785 3.215 16 O -0.957 6.957 17 O -0.977 6.977 18 C -0.727 4.727 19 C -0.049 4.049 20 C -0.089 4.089 21 C -0.072 4.072 22 C -0.080 4.080 23 C -0.084 4.084 24 N 0.529 4.471 25 O -0.318 6.318 26 O -0.440 6.440 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.185 0.815 38 H 0.217 0.783 39 H 0.231 0.769 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 18.167 -2.815 -2.244 18.520 hybrid contribution -0.668 0.777 0.620 1.198 sum 17.498 -2.037 -1.624 17.691 Atomic orbital electron populations 1.70085 1.08076 1.28196 1.50555 1.25924 0.95583 1.03256 0.94446 0.85594 0.78518 0.77903 0.79733 1.17409 1.21935 1.19057 1.21936 0.94619 0.90718 1.51776 0.89364 1.18865 0.87660 0.82835 0.97276 1.57423 1.56489 1.48385 1.19746 1.21064 0.94660 0.97141 0.84493 1.22770 1.00116 0.96685 1.02395 1.23090 1.02918 0.92784 1.02949 1.23062 1.04222 1.01684 0.89552 1.01858 0.73732 0.73296 0.72618 1.93499 1.84562 1.33075 1.84596 1.93514 1.57119 1.84909 1.62174 1.30927 1.24800 1.15414 1.01515 1.21623 0.93801 0.89886 0.99622 1.22453 0.93175 0.95696 0.97531 1.22226 1.00166 0.93073 0.91699 1.21786 0.89677 0.92945 1.03567 1.20877 0.98427 0.99394 0.89686 1.44208 1.00087 1.00598 1.02228 1.94376 1.68151 1.68220 1.01090 1.94600 1.22174 1.46943 1.80296 0.92612 0.95004 0.97174 0.87877 0.89340 0.89611 0.88359 0.89107 0.87738 0.86559 0.81475 0.78255 0.76877 0.79175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.44 0.28 -53.11 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.96 39.04 29.54 68.60 2.03 41.06 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.55 -27.21 9.38 25.60 0.24 -26.97 16 8 H 0.09 3.73 5.28 -2.91 -0.02 3.72 16 9 C 0.26 12.93 5.42 85.63 0.46 13.39 16 10 N -0.98 -40.86 1.86 -519.84 -0.97 -41.83 16 11 C 0.15 4.92 4.93 86.38 0.43 5.35 16 12 C -0.20 -6.37 6.00 -10.79 -0.06 -6.43 16 13 C -0.18 -5.03 10.18 30.62 0.31 -4.72 16 14 C -0.15 -3.44 10.25 30.62 0.31 -3.13 16 15 S 2.70 121.79 3.91 -56.49 -0.22 121.57 16 16 O -0.97 -44.27 16.38 -120.43 -1.97 -46.24 16 17 O -0.99 -54.31 14.32 -118.62 -1.70 -56.01 16 18 C -0.64 -23.32 5.82 22.27 0.13 -23.19 16 19 C -0.03 -0.82 8.80 22.27 0.20 -0.62 16 20 C -0.07 -1.12 10.05 22.27 0.22 -0.90 16 21 C -0.05 -0.68 10.05 22.27 0.22 -0.46 16 22 C -0.06 -1.25 9.56 22.27 0.21 -1.04 16 23 C 0.00 -0.01 6.82 36.37 0.25 0.24 16 24 N 0.01 0.52 4.45 -46.46 -0.21 0.31 16 25 O -0.08 -2.69 18.47 18.89 0.35 -2.35 16 26 O -0.25 -12.29 13.79 28.50 0.39 -11.90 16 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 29 H 0.01 0.60 6.89 -2.39 -0.02 0.59 16 30 H 0.10 3.03 8.12 -2.39 -0.02 3.01 16 31 H 0.09 2.45 7.41 -2.38 -0.02 2.43 16 32 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.10 2.68 8.03 -2.39 -0.02 2.66 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.17 4.37 5.09 -2.91 -0.01 4.35 16 38 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.19 2.65 7.63 -2.91 -0.02 2.63 16 Total: -1.00 -82.13 353.60 2.45 -79.67 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.08 Total: 16.44 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 3.39 Total: -47.63 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -0.89 Total: -94.62 kcal Atomic # 8 Polarization: -113.56 SS G_CDS: -2.93 Total: -116.49 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 16 Polarization: 121.79 SS G_CDS: -0.22 Total: 121.57 kcal Total: -82.13 2.45 -79.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264124807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.508 kcal (2) G-P(sol) polarization free energy of solvation -82.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds