Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47090 * 240.00014 * 3 2 1 5 5 H 1.48492 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46959 * 120.00594 * 3 2 1 7 7 C 1.37870 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99875 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99908 * 274.99926 * 10 9 7 12 12 C 1.52997 * 109.47278 * 275.00062 * 11 10 9 13 13 C 1.53011 * 117.49997 * 243.62469 * 12 11 10 14 14 C 1.52997 * 117.50301 * 175.00276 * 12 11 10 15 15 S 1.65597 * 120.00126 * 95.00147 * 10 9 7 16 16 O 1.42106 * 106.40592 * 156.45967 * 15 10 9 17 17 O 1.42099 * 106.40612 * 23.53605 * 15 10 9 18 18 C 1.76208 * 107.21736 * 269.99871 * 15 10 9 19 19 C 1.38235 * 119.99781 * 89.99853 * 18 15 10 20 20 C 1.38234 * 119.99692 * 180.02562 * 19 18 15 21 21 C 1.38241 * 120.00104 * 0.02562 * 20 19 18 22 22 N 1.48020 * 120.00001 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99894 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99903 * 179.72763 * 22 21 20 25 25 C 1.38239 * 119.99659 * 0.25361 * 21 20 19 26 26 C 1.38231 * 119.99991 * 359.46880 * 25 21 20 27 27 H 0.96997 * 120.00060 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 60.00320 * 9 7 2 29 29 H 1.08997 * 109.47381 * 299.99872 * 9 7 2 30 30 H 1.09001 * 109.47543 * 35.00189 * 11 10 9 31 31 H 1.09006 * 109.47035 * 155.00038 * 11 10 9 32 32 H 1.09001 * 115.55224 * 29.32816 * 12 11 10 33 33 H 1.09001 * 117.49492 * 359.97438 * 13 12 11 34 34 H 1.08998 * 117.49396 * 145.01958 * 13 12 11 35 35 H 1.08995 * 117.50220 * 214.98173 * 14 12 11 36 36 H 1.09008 * 117.49763 * 359.97438 * 14 12 11 37 37 H 1.07998 * 119.99910 * 359.97438 * 19 18 15 38 38 H 1.08002 * 120.00159 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99627 * 179.73007 * 25 21 20 40 40 H 1.08001 * 119.99546 * 180.27511 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7631 -4.0974 -1.2645 12 6 1.8035 -5.1102 -1.8923 13 6 2.2999 -6.5487 -2.0524 14 6 2.1538 -5.6485 -3.2810 15 16 2.6462 -4.3232 1.4281 16 8 3.0861 -5.6351 1.1044 17 8 1.5967 -4.0606 2.3494 18 6 4.0601 -3.4574 2.0248 19 6 3.9013 -2.3637 2.8551 20 6 5.0106 -1.6842 3.3228 21 6 6.2786 -2.0980 2.9597 22 7 7.4663 -1.3701 3.4600 23 8 7.3264 -0.4061 4.1913 24 8 8.5837 -1.7377 3.1441 25 6 6.4371 -3.1883 2.1247 26 6 5.3281 -3.8712 1.6616 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.9025 -3.2582 -1.9459 31 1 3.7243 -4.5760 -1.0761 32 1 0.7485 -4.9645 -1.6605 33 1 3.3103 -6.7733 -1.7108 34 1 1.5714 -7.3494 -1.9257 35 1 1.3292 -5.8572 -3.9626 36 1 3.0678 -5.2808 -3.7475 37 1 2.9106 -2.0396 3.1378 38 1 4.8866 -0.8294 3.9712 39 1 7.4276 -3.5089 1.8375 40 1 5.4522 -4.7257 1.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264164300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = -20.317927 kcal Electronic energy + Delta-G solvation = -27938.318584 eV Core-core repulsion = 23849.728861 eV Total energy + Delta-G solvation = -4088.589723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30278 -39.41768 -37.74875 -36.95915 -36.68997 -35.56695 -35.03033 -32.60322 -32.32950 -31.56953 -28.03747 -26.88988 -25.63419 -23.37986 -22.92914 -22.60058 -22.12299 -20.42306 -19.50249 -18.99831 -18.78897 -17.68478 -17.65806 -17.12506 -16.56864 -16.06588 -15.44142 -15.15209 -14.86396 -14.59173 -14.34388 -14.02364 -13.80500 -13.68010 -13.48366 -12.72137 -12.59121 -12.08078 -11.89848 -11.71730 -11.68360 -11.65652 -11.52849 -11.40783 -11.32882 -11.30513 -11.25063 -11.03793 -10.92285 -10.70845 -10.31452 -10.30758 -10.05110 -9.92384 -9.65399 -9.51626 -8.65901 -8.33227 -6.28107 -4.36507 -0.49984 0.64632 0.81178 1.08036 1.24202 2.89716 3.14308 3.21279 3.22707 3.35148 3.94506 4.05728 4.11942 4.21914 4.30464 4.43303 4.82952 4.91663 5.00237 5.05232 5.07302 5.08519 5.19058 5.31710 5.43509 5.49141 5.53430 5.65416 5.75809 5.78893 5.98367 6.06896 6.07489 6.27163 6.32802 6.34932 6.51703 7.10072 7.19304 7.38647 7.51292 7.66838 7.94056 8.67660 9.31234 10.79532 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.005415 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.182745 B = 5169.892383 C = 7174.016140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.242 3.758 10 N -0.972 5.972 11 C 0.161 3.839 12 C -0.167 4.167 13 C -0.175 4.175 14 C -0.179 4.179 15 S 2.684 3.316 16 O -0.960 6.960 17 O -0.946 6.946 18 C -0.624 4.624 19 C 0.004 3.996 20 C -0.076 4.076 21 C -0.003 4.003 22 N 0.024 4.976 23 O -0.153 6.153 24 O -0.157 6.157 25 C -0.083 4.083 26 C -0.025 4.025 27 H 0.268 0.732 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 -8.650 -0.122 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.120 3.880 10 N -0.811 5.811 11 C 0.035 3.965 12 C -0.187 4.187 13 C -0.212 4.212 14 C -0.217 4.217 15 S 2.770 3.230 16 O -0.950 6.950 17 O -0.936 6.936 18 C -0.706 4.706 19 C -0.016 4.016 20 C -0.096 4.096 21 C -0.085 4.085 22 N 0.545 4.455 23 O -0.371 6.371 24 O -0.374 6.374 25 C -0.103 4.103 26 C -0.044 4.044 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.187 0.813 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.579 -9.531 0.060 11.581 hybrid contribution 1.366 1.944 0.030 2.376 sum 7.945 -7.587 0.090 10.986 Atomic orbital electron populations 1.69899 1.05955 1.27551 1.48726 1.24894 0.94778 0.99073 0.94617 0.86718 0.79768 0.83118 0.78863 1.20122 1.20869 1.20060 1.21451 0.93371 0.90790 1.53305 0.92243 1.19349 0.87136 0.81342 1.00132 1.57386 1.56364 1.49328 1.18003 1.20710 0.93743 0.96230 0.85828 1.22835 1.01331 0.95301 0.99193 1.23015 1.02763 0.93651 1.01763 1.22917 1.03134 1.04688 0.90975 1.02436 0.73422 0.73460 0.73671 1.93556 1.82982 1.34382 1.84104 1.93588 1.52050 1.85437 1.62509 1.32081 1.18982 1.10900 1.08618 1.21121 1.00094 0.89987 0.90381 1.21238 0.89461 1.00123 0.98762 1.21399 0.85657 0.97726 1.03738 1.43700 1.02519 1.00231 0.99044 1.94555 1.93002 1.17284 1.32228 1.94523 1.10726 1.70649 1.61474 1.21089 1.01686 0.92732 0.94798 1.20947 0.89659 0.97824 0.96005 0.92262 0.93467 0.92689 0.89207 0.91393 0.87203 0.88500 0.89240 0.89057 0.88906 0.81339 0.82198 0.82428 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.58 13.29 55.43 0.74 -22.85 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 19.76 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -13.09 9.38 -34.44 -0.32 -13.41 16 8 H 0.06 1.37 7.81 -52.48 -0.41 0.96 16 9 C 0.24 5.31 5.44 -5.19 -0.03 5.28 16 10 N -0.97 -17.24 2.77 -115.66 -0.32 -17.56 16 11 C 0.16 2.42 5.63 -4.04 -0.02 2.39 16 12 C -0.17 -2.34 6.01 -90.62 -0.54 -2.89 16 13 C -0.17 -2.16 10.18 -26.73 -0.27 -2.43 16 14 C -0.18 -2.06 10.25 -26.73 -0.27 -2.34 16 15 S 2.68 45.54 5.65 -107.50 -0.61 44.93 16 16 O -0.96 -16.04 16.26 -57.17 -0.93 -16.97 16 17 O -0.95 -18.84 15.84 -57.17 -0.91 -19.75 16 18 C -0.62 -9.41 5.97 -39.58 -0.24 -9.65 16 19 C 0.00 0.06 9.52 -39.58 -0.38 -0.32 16 20 C -0.08 -1.08 9.56 -39.58 -0.38 -1.46 16 21 C 0.00 -0.04 6.85 -79.94 -0.55 -0.59 16 22 N 0.02 0.37 4.45 33.96 0.15 0.52 16 23 O -0.15 -2.42 18.45 -29.46 -0.54 -2.97 16 24 O -0.16 -2.37 18.45 -29.46 -0.54 -2.91 16 25 C -0.08 -1.03 9.56 -39.58 -0.38 -1.41 16 26 C -0.02 -0.31 9.52 -39.59 -0.38 -0.69 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.05 1.09 8.11 -51.93 -0.42 0.67 16 29 H 0.06 1.32 6.91 -51.93 -0.36 0.96 16 30 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 31 H 0.07 0.86 7.34 -51.93 -0.38 0.48 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.17 2.57 7.62 -52.49 -0.40 2.17 16 38 H 0.16 2.01 7.61 -52.49 -0.40 1.61 16 39 H 0.16 1.54 7.61 -52.49 -0.40 1.14 16 40 H 0.16 1.59 7.62 -52.49 -0.40 1.19 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -28.93 366.98 -11.14 -40.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.83 Total: 3.03 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.86 Total: -25.81 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.57 Total: -39.88 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -2.92 Total: -42.60 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 45.54 SS G_CDS: -0.61 Total: 44.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.93 -11.14 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264164300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.756 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds