Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47090 * 240.00014 * 3 2 1 5 5 H 1.48492 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46959 * 120.00594 * 3 2 1 7 7 C 1.37870 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99875 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99908 * 274.99926 * 10 9 7 12 12 C 1.52997 * 109.47278 * 275.00062 * 11 10 9 13 13 C 1.53011 * 117.49997 * 243.62469 * 12 11 10 14 14 C 1.52997 * 117.50301 * 175.00276 * 12 11 10 15 15 S 1.65597 * 120.00126 * 95.00147 * 10 9 7 16 16 O 1.42106 * 106.40592 * 156.45967 * 15 10 9 17 17 O 1.42099 * 106.40612 * 23.53605 * 15 10 9 18 18 C 1.76208 * 107.21736 * 269.99871 * 15 10 9 19 19 C 1.38235 * 119.99781 * 89.99853 * 18 15 10 20 20 C 1.38234 * 119.99692 * 180.02562 * 19 18 15 21 21 C 1.38241 * 120.00104 * 0.02562 * 20 19 18 22 22 N 1.48020 * 120.00001 * 179.97438 * 21 20 19 23 23 O 1.21803 * 119.99894 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99903 * 179.72763 * 22 21 20 25 25 C 1.38239 * 119.99659 * 0.25361 * 21 20 19 26 26 C 1.38231 * 119.99991 * 359.46880 * 25 21 20 27 27 H 0.96997 * 120.00060 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 60.00320 * 9 7 2 29 29 H 1.08997 * 109.47381 * 299.99872 * 9 7 2 30 30 H 1.09001 * 109.47543 * 35.00189 * 11 10 9 31 31 H 1.09006 * 109.47035 * 155.00038 * 11 10 9 32 32 H 1.09001 * 115.55224 * 29.32816 * 12 11 10 33 33 H 1.09001 * 117.49492 * 359.97438 * 13 12 11 34 34 H 1.08998 * 117.49396 * 145.01958 * 13 12 11 35 35 H 1.08995 * 117.50220 * 214.98173 * 14 12 11 36 36 H 1.09008 * 117.49763 * 359.97438 * 14 12 11 37 37 H 1.07998 * 119.99910 * 359.97438 * 19 18 15 38 38 H 1.08002 * 120.00159 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99627 * 179.73007 * 25 21 20 40 40 H 1.08001 * 119.99546 * 180.27511 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7631 -4.0974 -1.2645 12 6 1.8035 -5.1102 -1.8923 13 6 2.2999 -6.5487 -2.0524 14 6 2.1538 -5.6485 -3.2810 15 16 2.6462 -4.3232 1.4281 16 8 3.0861 -5.6351 1.1044 17 8 1.5967 -4.0606 2.3494 18 6 4.0601 -3.4574 2.0248 19 6 3.9013 -2.3637 2.8551 20 6 5.0106 -1.6842 3.3228 21 6 6.2786 -2.0980 2.9597 22 7 7.4663 -1.3701 3.4600 23 8 7.3264 -0.4061 4.1913 24 8 8.5837 -1.7377 3.1441 25 6 6.4371 -3.1883 2.1247 26 6 5.3281 -3.8712 1.6616 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.9025 -3.2582 -1.9459 31 1 3.7243 -4.5760 -1.0761 32 1 0.7485 -4.9645 -1.6605 33 1 3.3103 -6.7733 -1.7108 34 1 1.5714 -7.3494 -1.9257 35 1 1.3292 -5.8572 -3.9626 36 1 3.0678 -5.2808 -3.7475 37 1 2.9106 -2.0396 3.1378 38 1 4.8866 -0.8294 3.9712 39 1 7.4276 -3.5089 1.8375 40 1 5.4522 -4.7257 1.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264164300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = -35.714305 kcal Electronic energy + Delta-G solvation = -27938.986221 eV Core-core repulsion = 23849.728861 eV Total energy + Delta-G solvation = -4089.257360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.45706 -40.51997 -38.89758 -38.37402 -37.86140 -36.99263 -36.45098 -34.40778 -33.46283 -32.64330 -29.66625 -28.05279 -27.09539 -24.51356 -24.42037 -23.90652 -23.06728 -21.55498 -20.61938 -20.30724 -19.94583 -18.99299 -18.81910 -18.64252 -18.27184 -17.43837 -16.77310 -16.20959 -16.20131 -16.00124 -15.53670 -15.09473 -15.01962 -14.94326 -14.62657 -14.39488 -14.01834 -13.53000 -13.25826 -13.20099 -12.98324 -12.92973 -12.91449 -12.77356 -12.61062 -12.56230 -12.43632 -12.41309 -12.23536 -12.20165 -12.00006 -11.80406 -11.24117 -11.17205 -10.70653 -10.59480 -10.57619 -9.84155 -8.20827 -6.33715 -1.65383 -0.70515 -0.24455 -0.09369 0.10673 1.37864 1.40656 1.46044 1.72048 2.06075 2.37609 2.63970 3.00068 3.03828 3.12108 3.24427 3.28964 3.74899 3.80066 3.93085 3.97832 4.06321 4.14454 4.24058 4.35496 4.42484 4.44735 4.49439 4.65709 4.85698 4.92136 4.93588 5.05988 5.14343 5.22476 5.29928 5.36899 5.38787 5.46800 5.72260 5.86140 6.05813 6.32766 6.78180 7.36844 8.86857 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.005415 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.182745 B = 5169.892383 C = 7174.016140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.023 3.977 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.976 5.976 11 C 0.155 3.845 12 C -0.196 4.196 13 C -0.171 4.171 14 C -0.161 4.161 15 S 2.697 3.303 16 O -0.955 6.955 17 O -0.984 6.984 18 C -0.631 4.631 19 C -0.014 4.014 20 C -0.080 4.080 21 C -0.011 4.011 22 N 0.024 4.976 23 O -0.182 6.182 24 O -0.140 6.140 25 C -0.069 4.069 26 C -0.016 4.016 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.192 0.808 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 -9.677 -1.193 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.178 4.178 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.135 3.865 10 N -0.814 5.814 11 C 0.030 3.970 12 C -0.216 4.216 13 C -0.208 4.208 14 C -0.198 4.198 15 S 2.786 3.214 16 O -0.946 6.946 17 O -0.974 6.974 18 C -0.717 4.717 19 C -0.034 4.034 20 C -0.100 4.100 21 C -0.093 4.093 22 N 0.544 4.456 23 O -0.393 6.393 24 O -0.363 6.363 25 C -0.088 4.088 26 C -0.035 4.035 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.209 0.791 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 9.387 -10.548 -0.999 14.155 hybrid contribution 0.573 2.139 0.346 2.241 sum 9.960 -8.409 -0.653 13.051 Atomic orbital electron populations 1.70014 1.07363 1.28061 1.50622 1.25597 0.95341 1.02059 0.94789 0.85875 0.78656 0.79768 0.79072 1.19472 1.21162 1.19488 1.21755 0.93797 0.91289 1.51414 0.91393 1.18837 0.87406 0.82336 0.97942 1.57243 1.56283 1.48226 1.19656 1.20946 0.95064 0.96466 0.84513 1.22762 1.00148 0.96662 1.02026 1.23107 1.03166 0.92553 1.01950 1.23025 1.03979 1.02782 0.90028 1.01803 0.73384 0.73390 0.72858 1.93549 1.82929 1.34119 1.83969 1.93543 1.54333 1.85980 1.63566 1.31747 1.19182 1.11168 1.09557 1.21075 1.00095 0.90794 0.91419 1.21289 0.89381 1.00395 0.98928 1.21576 0.85153 0.98306 1.04279 1.43818 1.02727 1.00170 0.98908 1.94570 1.93134 1.18145 1.33401 1.94501 1.10974 1.70133 1.60653 1.21484 1.03086 0.91233 0.93017 1.21345 0.88372 0.98280 0.95536 0.92458 0.95279 0.95460 0.89735 0.88482 0.89373 0.87602 0.88859 0.88191 0.87220 0.82519 0.81345 0.79102 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 13.29 21.44 0.28 -50.24 16 2 C 0.02 1.16 5.46 84.65 0.46 1.62 16 3 Si 0.94 40.44 29.54 68.60 2.03 42.46 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -26.05 9.38 25.60 0.24 -25.81 16 8 H 0.07 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.26 11.71 5.44 85.63 0.47 12.17 16 10 N -0.98 -34.60 2.77 -519.85 -1.44 -36.03 16 11 C 0.16 4.44 5.63 86.38 0.49 4.93 16 12 C -0.20 -5.34 6.01 -10.79 -0.06 -5.40 16 13 C -0.17 -3.83 10.18 30.60 0.31 -3.52 16 14 C -0.16 -3.31 10.25 30.59 0.31 -3.00 16 15 S 2.70 90.34 5.65 -56.49 -0.32 90.02 16 16 O -0.96 -30.16 16.26 -128.00 -2.08 -32.24 16 17 O -0.98 -40.52 15.84 -128.00 -2.03 -42.54 16 18 C -0.63 -18.10 5.97 22.27 0.13 -17.97 16 19 C -0.01 -0.42 9.52 22.27 0.21 -0.21 16 20 C -0.08 -2.20 9.56 22.27 0.21 -1.98 16 21 C -0.01 -0.28 6.85 36.38 0.25 -0.03 16 22 N 0.02 0.68 4.45 -46.46 -0.21 0.47 16 23 O -0.18 -5.55 18.45 18.88 0.35 -5.20 16 24 O -0.14 -3.79 18.45 18.89 0.35 -3.45 16 25 C -0.07 -1.42 9.56 22.27 0.21 -1.21 16 26 C -0.02 -0.35 9.52 22.27 0.21 -0.13 16 27 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 29 H 0.03 1.39 6.91 -2.39 -0.02 1.37 16 30 H 0.08 2.48 8.11 -2.39 -0.02 2.46 16 31 H 0.10 2.16 7.34 -2.38 -0.02 2.14 16 32 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.11 2.18 8.03 -2.39 -0.02 2.16 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 1.90 8.14 -2.38 -0.02 1.89 16 37 H 0.16 5.01 7.62 -2.91 -0.02 4.99 16 38 H 0.17 4.17 7.61 -2.91 -0.02 4.15 16 39 H 0.19 2.69 7.61 -2.91 -0.02 2.67 16 40 H 0.19 2.87 7.62 -2.91 -0.02 2.85 16 Total: -1.00 -62.57 366.98 1.45 -61.12 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.07 Total: 16.18 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.45 Total: -40.55 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.36 Total: -85.80 kcal Atomic # 8 Polarization: -80.02 SS G_CDS: -3.41 Total: -83.43 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 90.34 SS G_CDS: -0.32 Total: 90.02 kcal Total: -62.57 1.45 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264164300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.403 kcal (2) G-P(sol) polarization free energy of solvation -62.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds