Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46888 * 269.99622 * 3 2 1 5 5 H 1.48499 * 109.47564 * 29.99694 * 3 2 1 6 6 H 1.48504 * 109.46932 * 150.00156 * 3 2 1 7 7 C 1.37875 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46900 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.42092 * 110.54424 * 291.62799 * 11 10 9 13 13 O 1.42101 * 110.54224 * 68.37996 * 11 10 9 14 14 N 1.65600 * 104.44754 * 180.02562 * 11 10 9 15 15 C 1.47292 * 121.14428 * 96.98972 * 14 11 10 16 16 C 1.53900 * 107.40223 * 137.97096 * 15 14 11 17 17 H 1.09004 * 109.74029 * 298.61368 * 16 15 14 18 18 C 1.50702 * 109.64902 * 178.19848 * 16 15 14 19 19 N 1.34777 * 119.99746 * 65.79039 * 18 16 15 20 20 O 1.21276 * 119.99796 * 245.78396 * 18 16 15 21 21 O 1.42956 * 108.68013 * 58.43215 * 16 15 14 22 22 C 1.35941 * 117.75313 * 310.41733 * 21 16 15 23 23 C 1.38656 * 119.65775 * 200.08874 * 22 21 16 24 24 C 1.38240 * 120.05458 * 180.31923 * 23 22 21 25 25 C 1.38251 * 120.29540 * 0.02562 * 24 23 22 26 26 C 1.38285 * 120.05966 * 359.95696 * 25 24 23 27 27 C 1.38587 * 119.87039 * 359.95542 * 26 25 24 28 28 H 0.97008 * 119.99899 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46713 * 60.00418 * 9 7 2 30 30 H 1.08993 * 109.47435 * 300.00098 * 9 7 2 31 31 H 1.08993 * 109.47248 * 300.00325 * 10 9 7 32 32 H 1.09000 * 109.46856 * 60.00240 * 10 9 7 33 33 H 1.09005 * 109.83101 * 257.56884 * 15 14 11 34 34 H 1.08990 * 109.83880 * 18.52535 * 15 14 11 35 35 H 0.97002 * 120.00154 * 359.97438 * 19 18 16 36 36 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 37 37 H 1.08007 * 119.97390 * 0.33207 * 23 22 21 38 38 H 1.07996 * 119.85473 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.97443 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.06653 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3382 -5.2330 0.0021 12 8 0.6647 -5.4194 1.2393 13 8 0.6638 -5.4199 -1.2346 14 7 2.5204 -6.3927 0.0025 15 6 2.9569 -7.0352 1.2540 16 6 3.1244 -8.5376 0.9659 17 1 2.1687 -8.9625 0.6589 18 6 3.6143 -9.2399 2.2061 19 7 2.8268 -9.3073 3.2978 20 8 4.7171 -9.7443 2.2217 21 8 4.0801 -8.6986 -0.0851 22 6 3.9163 -7.9521 -1.2093 23 6 4.5279 -8.3463 -2.3897 24 6 4.3723 -7.5897 -3.5362 25 6 3.6082 -6.4378 -3.5133 26 6 2.9942 -6.0370 -2.3408 27 6 3.1456 -6.7929 -1.1891 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8712 -3.6047 -0.8889 32 1 2.8726 -3.6039 0.8910 33 1 3.9071 -6.6093 1.5764 34 1 2.2033 -6.8882 2.0275 35 1 1.9449 -8.9036 3.2853 36 1 3.1420 -9.7597 4.0959 37 1 5.1261 -9.2452 -2.4134 38 1 4.8497 -7.8999 -4.4539 39 1 3.4905 -5.8504 -4.4119 40 1 2.3977 -5.1370 -2.3227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264685395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = -108.871743 kcal Electronic energy + Delta-G solvation = -27936.511894 eV Core-core repulsion = 23844.082190 eV Total energy + Delta-G solvation = -4092.429704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26257 -39.55862 -37.62556 -36.86997 -36.15769 -35.70891 -34.14812 -34.04683 -31.36850 -31.25611 -30.49512 -28.08901 -25.78509 -25.22333 -23.33202 -22.06887 -21.62478 -20.60012 -19.18970 -18.73006 -18.11164 -17.91131 -17.20571 -16.72183 -16.28384 -16.09674 -15.77729 -15.50017 -15.33848 -14.78199 -14.63495 -14.47862 -14.24670 -14.02409 -13.79818 -13.62988 -13.32919 -12.64352 -12.44988 -12.34441 -11.99375 -11.93689 -11.88106 -11.76008 -11.37520 -11.17080 -11.12935 -10.90119 -10.73806 -10.51918 -10.49147 -10.24329 -10.13570 -9.82887 -9.32412 -8.63401 -8.59236 -8.01371 -6.21683 -4.27985 0.30383 1.25103 1.28758 2.08949 2.37882 2.47469 3.21127 3.27853 3.30388 3.42722 3.65656 3.89739 4.02573 4.11797 4.29554 4.37412 4.40125 4.52355 4.69318 4.88685 4.99134 5.13351 5.19833 5.21695 5.28740 5.43696 5.51495 5.56102 5.74711 6.04105 6.17883 6.28498 6.32205 6.35369 6.49862 6.62121 6.82391 7.14495 7.18404 7.19735 7.71221 7.78148 8.05196 8.75274 9.37688 10.89184 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003608 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.673095 B = 7758.440602 C = 8842.536097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.581 4.581 11 S 2.576 3.424 12 O -0.953 6.953 13 O -0.943 6.943 14 N -0.945 5.945 15 C 0.081 3.919 16 C 0.063 3.937 17 H 0.106 0.894 18 C 0.532 3.468 19 N -0.847 5.847 20 O -0.513 6.513 21 O -0.284 6.284 22 C 0.089 3.911 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.130 4.130 27 C 0.109 3.891 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.407 0.593 36 H 0.411 0.589 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -17.488 0.403 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.716 4.716 11 S 2.678 3.322 12 O -0.944 6.944 13 O -0.933 6.933 14 N -0.768 5.768 15 C -0.044 4.044 16 C 0.001 3.999 17 H 0.124 0.876 18 C 0.314 3.686 19 N -0.414 5.414 20 O -0.387 6.387 21 O -0.197 6.197 22 C 0.041 3.959 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.151 4.151 27 C 0.013 3.987 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.236 0.764 36 H 0.243 0.757 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.807 -17.987 0.365 18.905 hybrid contribution 0.401 1.398 0.470 1.528 sum 6.208 -16.589 0.834 17.732 Atomic orbital electron populations 1.69950 1.06135 1.27372 1.49281 1.25058 0.94985 0.99587 0.94701 0.86448 0.79721 0.82668 0.78358 1.20349 1.20942 1.19696 1.20962 0.93130 0.89482 1.52590 0.91888 1.19012 0.92560 0.90349 0.99077 1.30488 1.13728 1.16473 1.10866 1.06467 0.74530 0.76736 0.74516 1.93528 1.70532 1.85249 1.45057 1.93588 1.70738 1.84702 1.44316 1.56385 1.55409 1.54895 1.10088 1.22387 1.03895 0.91262 0.86888 1.22500 0.93529 0.96035 0.87853 0.87601 1.19705 0.85114 0.79837 0.83962 1.43686 1.20893 1.61028 1.15744 1.90805 1.19853 1.45362 1.82673 1.86090 1.48940 1.61279 1.23352 1.18486 1.00531 0.89798 0.87079 1.20422 1.02316 1.01445 0.89348 1.20915 0.99586 0.95217 0.97524 1.20945 0.97130 0.97063 0.97541 1.21121 1.01423 1.00802 0.91727 1.17565 0.99482 0.95117 0.86510 0.92412 0.94629 0.94698 0.85610 0.85697 0.88507 0.85757 0.76390 0.75702 0.84726 0.85057 0.84852 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.87 9.11 -34.44 -0.31 -14.18 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.58 -10.58 5.98 37.16 0.22 -10.36 16 11 S 2.58 43.91 4.84 -107.50 -0.52 43.39 16 12 O -0.95 -17.46 16.48 -57.54 -0.95 -18.40 16 13 O -0.94 -18.29 15.17 -57.54 -0.87 -19.16 16 14 N -0.94 -13.36 3.24 -57.42 -0.19 -13.55 16 15 C 0.08 0.93 6.00 -3.14 -0.02 0.91 16 16 C 0.06 0.71 3.38 -27.41 -0.09 0.62 16 17 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.53 5.67 7.46 -10.98 -0.08 5.58 16 19 N -0.85 -5.20 8.85 31.22 0.28 -4.92 16 20 O -0.51 -7.63 17.35 -14.23 -0.25 -7.87 16 21 O -0.28 -3.91 9.51 -39.35 -0.37 -4.29 16 22 C 0.09 1.23 6.51 -39.06 -0.25 0.97 16 23 C -0.12 -1.35 9.97 -39.43 -0.39 -1.75 16 24 C -0.11 -1.18 10.03 -39.58 -0.40 -1.58 16 25 C -0.11 -1.28 10.05 -39.56 -0.40 -1.68 16 26 C -0.13 -1.87 8.52 -39.44 -0.34 -2.20 16 27 C 0.11 1.59 6.23 -83.44 -0.52 1.07 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.13 2.08 7.25 -51.93 -0.38 1.70 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.12 1.19 6.77 -51.93 -0.35 0.84 16 35 H 0.41 1.58 8.79 -40.82 -0.36 1.22 16 36 H 0.41 1.91 8.93 -40.82 -0.36 1.55 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 2.16 4.88 -52.49 -0.26 1.90 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -36.21 350.84 -9.32 -45.53 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.63 Total: 3.72 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.82 Total: -20.50 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.83 Total: -43.28 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -2.44 Total: -49.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 43.91 SS G_CDS: -0.52 Total: 43.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.21 -9.32 -45.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264685395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.341 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds