Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99814 * 2 1 4 4 H 1.48504 * 109.46888 * 269.99622 * 3 2 1 5 5 H 1.48499 * 109.47564 * 29.99694 * 3 2 1 6 6 H 1.48504 * 109.46932 * 150.00156 * 3 2 1 7 7 C 1.37875 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46900 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46945 * 180.02562 * 10 9 7 12 12 O 1.42092 * 110.54424 * 291.62799 * 11 10 9 13 13 O 1.42101 * 110.54224 * 68.37996 * 11 10 9 14 14 N 1.65600 * 104.44754 * 180.02562 * 11 10 9 15 15 C 1.47292 * 121.14428 * 96.98972 * 14 11 10 16 16 C 1.53900 * 107.40223 * 137.97096 * 15 14 11 17 17 H 1.09004 * 109.74029 * 298.61368 * 16 15 14 18 18 C 1.50702 * 109.64902 * 178.19848 * 16 15 14 19 19 N 1.34777 * 119.99746 * 65.79039 * 18 16 15 20 20 O 1.21276 * 119.99796 * 245.78396 * 18 16 15 21 21 O 1.42956 * 108.68013 * 58.43215 * 16 15 14 22 22 C 1.35941 * 117.75313 * 310.41733 * 21 16 15 23 23 C 1.38656 * 119.65775 * 200.08874 * 22 21 16 24 24 C 1.38240 * 120.05458 * 180.31923 * 23 22 21 25 25 C 1.38251 * 120.29540 * 0.02562 * 24 23 22 26 26 C 1.38285 * 120.05966 * 359.95696 * 25 24 23 27 27 C 1.38587 * 119.87039 * 359.95542 * 26 25 24 28 28 H 0.97008 * 119.99899 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46713 * 60.00418 * 9 7 2 30 30 H 1.08993 * 109.47435 * 300.00098 * 9 7 2 31 31 H 1.08993 * 109.47248 * 300.00325 * 10 9 7 32 32 H 1.09000 * 109.46856 * 60.00240 * 10 9 7 33 33 H 1.09005 * 109.83101 * 257.56884 * 15 14 11 34 34 H 1.08990 * 109.83880 * 18.52535 * 15 14 11 35 35 H 0.97002 * 120.00154 * 359.97438 * 19 18 16 36 36 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 37 37 H 1.08007 * 119.97390 * 0.33207 * 23 22 21 38 38 H 1.07996 * 119.85473 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.97443 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.06653 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 16 1.3382 -5.2330 0.0021 12 8 0.6647 -5.4194 1.2393 13 8 0.6638 -5.4199 -1.2346 14 7 2.5204 -6.3927 0.0025 15 6 2.9569 -7.0352 1.2540 16 6 3.1244 -8.5376 0.9659 17 1 2.1687 -8.9625 0.6589 18 6 3.6143 -9.2399 2.2061 19 7 2.8268 -9.3073 3.2978 20 8 4.7171 -9.7443 2.2217 21 8 4.0801 -8.6986 -0.0851 22 6 3.9163 -7.9521 -1.2093 23 6 4.5279 -8.3463 -2.3897 24 6 4.3723 -7.5897 -3.5362 25 6 3.6082 -6.4378 -3.5133 26 6 2.9942 -6.0370 -2.3408 27 6 3.1456 -6.7929 -1.1891 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8712 -3.6047 -0.8889 32 1 2.8726 -3.6039 0.8910 33 1 3.9071 -6.6093 1.5764 34 1 2.2033 -6.8882 2.0275 35 1 1.9449 -8.9036 3.2853 36 1 3.1420 -9.7597 4.0959 37 1 5.1261 -9.2452 -2.4134 38 1 4.8497 -7.8999 -4.4539 39 1 3.4905 -5.8504 -4.4119 40 1 2.3977 -5.1370 -2.3227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264685395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = -136.827470 kcal Electronic energy + Delta-G solvation = -27937.724145 eV Core-core repulsion = 23844.082190 eV Total energy + Delta-G solvation = -4093.641956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20786 -40.44944 -38.76356 -38.10630 -37.37946 -36.97951 -35.95838 -34.92312 -33.22267 -32.16097 -31.46149 -29.07336 -27.66752 -26.17350 -24.44916 -23.36971 -22.95596 -21.49182 -20.37582 -19.66574 -19.38511 -18.86087 -18.52555 -18.02058 -17.34104 -17.20802 -17.07315 -16.79955 -16.54189 -16.25384 -15.74189 -15.47632 -15.25230 -15.17476 -14.91538 -14.81846 -14.50991 -14.27209 -13.80582 -13.71400 -13.48132 -13.29903 -13.14484 -12.96368 -12.86573 -12.74075 -12.33249 -12.31289 -12.22089 -11.91317 -11.81447 -11.63986 -11.24934 -11.03478 -10.83547 -10.66010 -9.60780 -9.01504 -8.28087 -6.41861 -1.08011 0.28608 0.33709 1.16555 1.33541 1.41521 1.42215 1.53479 1.56366 2.36237 2.48155 2.62656 2.77140 2.88953 3.02728 3.06014 3.35538 3.60524 3.69423 3.74002 3.89729 3.94119 4.00708 4.18008 4.33187 4.36302 4.43922 4.60228 4.65227 4.78325 5.10207 5.20809 5.21188 5.22176 5.42366 5.56430 5.65895 5.68283 5.79554 6.02747 6.15727 6.28282 6.70830 7.11023 7.28618 8.83898 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.003608 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.673095 B = 7758.440602 C = 8842.536097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.024 3.976 10 C -0.584 4.584 11 S 2.607 3.393 12 O -0.967 6.967 13 O -0.969 6.969 14 N -0.939 5.939 15 C 0.073 3.927 16 C 0.060 3.940 17 H 0.122 0.878 18 C 0.537 3.463 19 N -0.821 5.821 20 O -0.561 6.561 21 O -0.298 6.298 22 C 0.077 3.923 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.111 4.111 26 C -0.156 4.156 27 C 0.089 3.911 28 H 0.268 0.732 29 H 0.011 0.989 30 H 0.013 0.987 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.421 0.579 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.154 0.846 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -18.267 0.183 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.092 0.908 9 C -0.015 4.015 10 C -0.716 4.716 11 S 2.707 3.293 12 O -0.957 6.957 13 O -0.960 6.960 14 N -0.764 5.764 15 C -0.052 4.052 16 C -0.002 4.002 17 H 0.139 0.861 18 C 0.319 3.681 19 N -0.388 5.388 20 O -0.438 6.438 21 O -0.212 6.212 22 C 0.029 3.971 23 C -0.137 4.137 24 C -0.118 4.118 25 C -0.130 4.130 26 C -0.177 4.177 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.255 0.745 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.172 0.828 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.404 -18.749 0.176 20.159 hybrid contribution -0.109 1.525 0.514 1.613 sum 7.295 -17.224 0.691 18.718 Atomic orbital electron populations 1.70082 1.07919 1.28399 1.50633 1.26035 0.95819 1.03616 0.94272 0.85361 0.78655 0.77888 0.78672 1.19602 1.20738 1.18377 1.21453 0.93905 0.90663 1.51860 0.90834 1.18836 0.93353 0.92452 0.96886 1.30391 1.12934 1.15650 1.12672 1.05289 0.74205 0.76282 0.73502 1.93498 1.71191 1.85467 1.45588 1.93552 1.71832 1.85026 1.45544 1.55954 1.55099 1.54109 1.11265 1.22695 1.04968 0.91398 0.86112 1.22685 0.93872 0.95882 0.87735 0.86098 1.19638 0.84697 0.79306 0.84449 1.43513 1.20852 1.59674 1.14786 1.90789 1.21862 1.47699 1.83448 1.86071 1.49862 1.61412 1.23827 1.18750 1.00852 0.89693 0.87812 1.20816 1.01776 1.02133 0.88983 1.21327 0.98143 0.93851 0.98478 1.21284 0.96597 0.97763 0.97359 1.21220 1.02560 1.00900 0.93029 1.17709 1.00559 0.95989 0.86438 0.92292 0.97023 0.96868 0.84164 0.83663 0.87540 0.83979 0.74738 0.74453 0.82796 0.81337 0.82820 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.58 -21.42 5.98 71.98 0.43 -20.99 16 11 S 2.61 89.46 4.84 -56.49 -0.27 89.19 16 12 O -0.97 -35.28 16.48 -127.65 -2.10 -37.38 16 13 O -0.97 -38.48 15.17 -127.65 -1.94 -40.41 16 14 N -0.94 -25.97 3.24 -335.58 -1.09 -27.06 16 15 C 0.07 1.57 6.00 86.53 0.52 2.09 16 16 C 0.06 1.27 3.38 30.15 0.10 1.38 16 17 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 18 C 0.54 10.72 7.46 87.66 0.65 11.37 16 19 N -0.82 -8.40 8.85 -173.53 -1.54 -9.93 16 20 O -0.56 -16.29 17.35 15.91 0.28 -16.02 16 21 O -0.30 -7.92 9.51 -73.96 -0.70 -8.62 16 22 C 0.08 2.02 6.51 22.61 0.15 2.17 16 23 C -0.12 -2.48 9.97 22.37 0.22 -2.26 16 24 C -0.10 -1.78 10.03 22.27 0.22 -1.56 16 25 C -0.11 -2.45 10.05 22.28 0.22 -2.22 16 26 C -0.16 -4.43 8.52 22.36 0.19 -4.24 16 27 C 0.09 2.51 6.23 38.09 0.24 2.75 16 28 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 29 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.01 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.14 4.68 7.25 -2.39 -0.02 4.66 16 32 H 0.15 4.64 8.14 -2.39 -0.02 4.62 16 33 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.14 2.47 6.77 -2.39 -0.02 2.46 16 35 H 0.42 2.23 8.79 -92.71 -0.82 1.41 16 36 H 0.42 3.04 8.93 -92.70 -0.83 2.21 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.13 3.92 4.88 -2.91 -0.01 3.91 16 Total: -1.00 -79.83 350.84 -1.79 -81.62 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.53 Total: 17.31 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 3.80 Total: -38.38 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.34 Total: -91.51 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -4.47 Total: -102.43 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 89.46 SS G_CDS: -0.27 Total: 89.19 kcal Total: -79.83 -1.79 -81.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264685395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.203 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds