Wall clock time and date at job start Sat Apr 11 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48498 * 109.46996 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.46795 * 30.00379 * 3 2 1 6 6 H 1.48491 * 109.47256 * 150.00212 * 3 2 1 7 7 C 1.37880 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47211 * 179.97438 * 10 9 7 12 12 S 1.65592 * 119.99921 * 164.99430 * 11 10 9 13 13 O 1.42099 * 106.40717 * 311.46209 * 12 11 10 14 14 O 1.42096 * 106.40376 * 178.53992 * 12 11 10 15 15 C 1.76202 * 107.21902 * 65.00269 * 12 11 10 16 16 C 1.38281 * 119.93135 * 269.72374 * 15 12 11 17 17 C 1.38117 * 120.07209 * 180.27256 * 16 15 12 18 18 C 1.38860 * 119.92883 * 0.02562 * 17 16 15 19 19 N 1.39947 * 120.07097 * 179.97438 * 18 17 16 20 20 C 1.47097 * 125.55877 * 359.73936 * 19 18 17 21 21 C 1.54088 * 103.78017 * 179.97438 * 20 19 18 22 22 O 1.45702 * 104.00760 * 0.32619 * 21 20 19 23 23 C 1.33784 * 109.47520 * 359.78391 * 22 21 20 24 24 O 1.21508 * 123.06991 * 180.02562 * 23 22 21 25 25 C 1.38862 * 119.86055 * 359.97438 * 18 17 16 26 26 C 1.38112 * 119.93380 * 0.02562 * 25 18 17 27 27 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47423 * 60.00196 * 9 7 2 29 29 H 1.09004 * 109.47311 * 299.99818 * 9 7 2 30 30 H 1.08997 * 109.47461 * 59.99984 * 10 9 7 31 31 H 1.08998 * 109.46875 * 300.00151 * 10 9 7 32 32 H 0.96999 * 119.99727 * 344.99819 * 11 10 9 33 33 H 1.08007 * 119.96056 * 0.25069 * 16 15 12 34 34 H 1.07994 * 120.03406 * 179.97438 * 17 16 15 35 35 H 1.09009 * 110.55990 * 298.61292 * 20 19 18 36 36 H 1.09001 * 110.56360 * 61.45965 * 20 19 18 37 37 H 1.08999 * 110.69932 * 241.60398 * 21 20 19 38 38 H 1.09004 * 110.45747 * 118.92013 * 21 20 19 39 39 H 1.08001 * 120.03895 * 179.97438 * 25 18 17 40 40 H 1.08000 * 119.96908 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9309 0.0001 12 16 2.2983 -6.3405 -0.3711 13 8 3.0276 -6.0913 -1.5649 14 8 1.3366 -7.3796 -0.2505 15 6 3.4937 -6.6200 0.8929 16 6 4.7742 -6.1165 0.7551 17 6 5.7151 -6.3386 1.7415 18 6 5.3742 -7.0688 2.8724 19 7 6.3254 -7.2960 3.8734 20 6 7.7187 -6.8249 3.8524 21 6 8.3031 -7.3482 5.1786 22 8 7.1919 -8.0586 5.7978 23 6 6.1174 -7.9841 5.0043 24 8 5.0502 -8.4935 5.2838 25 6 4.0875 -7.5730 3.0078 26 6 3.1511 -7.3475 2.0179 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.5677 -4.9451 0.2179 33 1 5.0389 -5.5493 -0.1251 34 1 6.7151 -5.9455 1.6330 35 1 8.2537 -7.2499 3.0029 36 1 7.7542 -5.7359 3.8225 37 1 8.6270 -6.5207 5.8100 38 1 9.1326 -8.0290 4.9871 39 1 3.8193 -8.1416 3.8860 40 1 2.1503 -7.7397 2.1225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273639394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:52 Heat of formation + Delta-G solvation = -110.343012 kcal Electronic energy + Delta-G solvation = -26750.769764 eV Core-core repulsion = 22658.276261 eV Total energy + Delta-G solvation = -4092.493503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45901 -39.50093 -37.84551 -37.00489 -36.09340 -35.60216 -35.38388 -32.75467 -31.49153 -31.24473 -29.66532 -29.14095 -24.96833 -24.51888 -24.46645 -22.49536 -21.57438 -21.14948 -19.37914 -18.70155 -18.06591 -17.95461 -17.47528 -17.07621 -16.33047 -16.05240 -15.47484 -15.32273 -14.92053 -14.80064 -14.57634 -14.52875 -14.48323 -14.00879 -13.88888 -13.74664 -13.27298 -13.05557 -12.99382 -12.55675 -11.93951 -11.88589 -11.78265 -11.71446 -11.38684 -11.30943 -11.16183 -11.02940 -10.97150 -10.65765 -10.60011 -10.42453 -9.60384 -9.29949 -9.29182 -8.93872 -8.68377 -8.42834 -6.09809 -4.13395 0.45217 0.75432 1.09351 1.65507 2.12867 2.74580 3.16346 3.27225 3.33681 3.35647 3.40137 3.48504 3.88941 3.98383 4.01066 4.38421 4.42221 4.51309 4.59174 4.64179 4.76786 4.91623 5.05101 5.07400 5.27015 5.33425 5.56642 5.76515 5.78728 5.90652 5.97346 6.02724 6.17733 6.46059 6.59500 6.70826 6.72224 7.34645 7.41071 7.54774 7.64138 7.88758 8.26167 8.92418 9.51159 11.01632 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.003001 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.004498 B = 9328.598303 C =11019.379163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.118 3.882 11 N -1.110 6.110 12 S 2.695 3.305 13 O -0.960 6.960 14 O -0.970 6.970 15 C -0.695 4.695 16 C 0.013 3.987 17 C -0.176 4.176 18 C 0.229 3.771 19 N -0.572 5.572 20 C 0.056 3.944 21 C 0.042 3.958 22 O -0.318 6.318 23 C 0.646 3.354 24 O -0.494 6.494 25 C -0.177 4.177 26 C 0.014 3.986 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.417 0.583 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.164 0.836 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.844 -14.677 8.047 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.007 4.007 11 N -0.872 5.872 12 S 2.784 3.216 13 O -0.950 6.950 14 O -0.960 6.960 15 C -0.782 4.782 16 C -0.007 4.007 17 C -0.198 4.198 18 C 0.136 3.864 19 N -0.308 5.308 20 C -0.067 4.067 21 C -0.033 4.033 22 O -0.228 6.228 23 C 0.401 3.599 24 O -0.378 6.378 25 C -0.198 4.198 26 C -0.006 4.006 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.181 0.819 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.297 -15.497 7.764 24.487 hybrid contribution 0.702 1.308 0.756 1.666 sum 17.999 -14.189 8.520 24.452 Atomic orbital electron populations 1.69953 1.06091 1.26883 1.50135 1.25004 0.94876 0.99367 0.95051 0.86536 0.79731 0.83184 0.78194 1.20534 1.21213 1.19848 1.21076 0.93147 0.90513 1.51600 0.92287 1.19286 0.94079 0.90505 0.98265 1.21654 0.96135 0.82599 1.00264 1.55490 1.21500 1.22109 1.88123 1.01774 0.73296 0.72583 0.73973 1.93571 1.73789 1.85149 1.42531 1.93558 1.59976 1.55403 1.87103 1.31120 1.13883 1.14284 1.18872 1.20779 0.90406 0.92301 0.97168 1.20777 1.01215 1.03833 0.93945 1.17652 0.87658 0.94683 0.86443 1.45521 1.12253 1.53499 1.19497 1.23088 0.80910 1.02923 0.99771 1.24401 0.88573 0.97956 0.92335 1.87352 1.21234 1.70508 1.43735 1.18465 0.84226 0.78310 0.78917 1.90979 1.21882 1.49809 1.75080 1.21673 0.91467 1.04175 1.02480 1.20839 0.99507 0.90606 0.89630 0.92802 0.95518 0.95764 0.93008 0.91296 0.74773 0.83289 0.84671 0.87689 0.87524 0.86778 0.86889 0.81910 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.42 5.12 -27.88 -0.14 0.28 16 10 C 0.12 2.25 6.16 -4.04 -0.02 2.22 16 11 N -1.11 -18.10 6.00 -10.61 -0.06 -18.16 16 12 S 2.70 41.69 5.74 -107.50 -0.62 41.07 16 13 O -0.96 -17.10 16.74 -57.17 -0.96 -18.06 16 14 O -0.97 -16.57 17.28 -57.17 -0.99 -17.55 16 15 C -0.69 -9.45 5.95 -39.55 -0.24 -9.68 16 16 C 0.01 0.16 9.51 -39.61 -0.38 -0.22 16 17 C -0.18 -1.78 9.49 -39.40 -0.37 -2.16 16 18 C 0.23 2.58 6.63 -83.69 -0.56 2.03 16 19 N -0.57 -5.24 3.16 -118.27 -0.37 -5.62 16 20 C 0.06 0.21 6.49 -3.15 -0.02 0.19 16 21 C 0.04 0.12 8.23 37.73 0.31 0.43 16 22 O -0.32 -2.77 11.09 -37.86 -0.42 -3.19 16 23 C 0.65 7.28 8.77 53.71 0.47 7.75 16 24 O -0.49 -7.32 14.75 -19.11 -0.28 -7.60 16 25 C -0.18 -2.28 9.31 -39.40 -0.37 -2.65 16 26 C 0.01 0.18 9.51 -39.61 -0.38 -0.19 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 32 H 0.42 6.33 8.65 -34.47 -0.30 6.04 16 33 H 0.15 1.64 7.61 -52.48 -0.40 1.24 16 34 H 0.14 0.90 7.31 -52.49 -0.38 0.51 16 35 H 0.10 0.19 8.14 -51.92 -0.42 -0.24 16 36 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.16 2.20 5.24 -52.49 -0.28 1.93 16 40 H 0.15 1.73 7.61 -52.49 -0.40 1.33 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -36.78 355.85 -9.38 -46.16 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.66 Total: 1.68 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.10 Total: -14.78 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.30 Total: -48.86 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -2.65 Total: -46.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 41.69 SS G_CDS: -0.62 Total: 41.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.78 -9.38 -46.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273639394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.180 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds