Wall clock time and date at job start Sat Apr 11 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48498 * 109.46996 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.46795 * 30.00379 * 3 2 1 6 6 H 1.48491 * 109.47256 * 150.00212 * 3 2 1 7 7 C 1.37880 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47211 * 179.97438 * 10 9 7 12 12 S 1.65592 * 119.99921 * 164.99430 * 11 10 9 13 13 O 1.42099 * 106.40717 * 311.46209 * 12 11 10 14 14 O 1.42096 * 106.40376 * 178.53992 * 12 11 10 15 15 C 1.76202 * 107.21902 * 65.00269 * 12 11 10 16 16 C 1.38281 * 119.93135 * 269.72374 * 15 12 11 17 17 C 1.38117 * 120.07209 * 180.27256 * 16 15 12 18 18 C 1.38860 * 119.92883 * 0.02562 * 17 16 15 19 19 N 1.39947 * 120.07097 * 179.97438 * 18 17 16 20 20 C 1.47097 * 125.55877 * 359.73936 * 19 18 17 21 21 C 1.54088 * 103.78017 * 179.97438 * 20 19 18 22 22 O 1.45702 * 104.00760 * 0.32619 * 21 20 19 23 23 C 1.33784 * 109.47520 * 359.78391 * 22 21 20 24 24 O 1.21508 * 123.06991 * 180.02562 * 23 22 21 25 25 C 1.38862 * 119.86055 * 359.97438 * 18 17 16 26 26 C 1.38112 * 119.93380 * 0.02562 * 25 18 17 27 27 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47423 * 60.00196 * 9 7 2 29 29 H 1.09004 * 109.47311 * 299.99818 * 9 7 2 30 30 H 1.08997 * 109.47461 * 59.99984 * 10 9 7 31 31 H 1.08998 * 109.46875 * 300.00151 * 10 9 7 32 32 H 0.96999 * 119.99727 * 344.99819 * 11 10 9 33 33 H 1.08007 * 119.96056 * 0.25069 * 16 15 12 34 34 H 1.07994 * 120.03406 * 179.97438 * 17 16 15 35 35 H 1.09009 * 110.55990 * 298.61292 * 20 19 18 36 36 H 1.09001 * 110.56360 * 61.45965 * 20 19 18 37 37 H 1.08999 * 110.69932 * 241.60398 * 21 20 19 38 38 H 1.09004 * 110.45747 * 118.92013 * 21 20 19 39 39 H 1.08001 * 120.03895 * 179.97438 * 25 18 17 40 40 H 1.08000 * 119.96908 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9309 0.0001 12 16 2.2983 -6.3405 -0.3711 13 8 3.0276 -6.0913 -1.5649 14 8 1.3366 -7.3796 -0.2505 15 6 3.4937 -6.6200 0.8929 16 6 4.7742 -6.1165 0.7551 17 6 5.7151 -6.3386 1.7415 18 6 5.3742 -7.0688 2.8724 19 7 6.3254 -7.2960 3.8734 20 6 7.7187 -6.8249 3.8524 21 6 8.3031 -7.3482 5.1786 22 8 7.1919 -8.0586 5.7978 23 6 6.1174 -7.9841 5.0043 24 8 5.0502 -8.4935 5.2838 25 6 4.0875 -7.5730 3.0078 26 6 3.1511 -7.3475 2.0179 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.5677 -4.9451 0.2179 33 1 5.0389 -5.5493 -0.1251 34 1 6.7151 -5.9455 1.6330 35 1 8.2537 -7.2499 3.0029 36 1 7.7542 -5.7359 3.8225 37 1 8.6270 -6.5207 5.8100 38 1 9.1326 -8.0290 4.9871 39 1 3.8193 -8.1416 3.8860 40 1 2.1503 -7.7397 2.1225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273639394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:51 Heat of formation + Delta-G solvation = -138.179953 kcal Electronic energy + Delta-G solvation = -26751.976865 eV Core-core repulsion = 22658.276261 eV Total energy + Delta-G solvation = -4093.700604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.11030 -40.34674 -38.67381 -38.34074 -37.02042 -36.93418 -36.76545 -34.69497 -32.28484 -32.01385 -30.96945 -30.27410 -26.38610 -25.52966 -25.30395 -23.29681 -22.87945 -22.37066 -20.60454 -19.44128 -19.16174 -18.60645 -18.49088 -18.15993 -18.09035 -17.18628 -16.60483 -16.43609 -15.95621 -15.91013 -15.50031 -15.35473 -15.26878 -15.23948 -15.13965 -14.64749 -14.39783 -14.21813 -13.83061 -13.36447 -13.33898 -13.23437 -13.22355 -13.13554 -12.94912 -12.76552 -12.43405 -12.33880 -12.08023 -12.02331 -11.53352 -11.48406 -11.45261 -11.27280 -10.59154 -10.28965 -10.19646 -9.51272 -8.17524 -6.28185 -0.64223 -0.35279 0.18486 0.98899 1.31535 1.46045 1.47085 1.57531 2.03266 2.31783 2.42123 2.47020 2.78703 3.14295 3.17808 3.24617 3.34973 3.75429 3.89279 3.93579 4.12386 4.21360 4.25447 4.35039 4.48164 4.59036 4.59914 4.64693 4.71462 4.88502 4.90405 5.00047 5.04513 5.09187 5.16386 5.53869 5.67564 5.71920 5.84626 6.04160 6.05414 6.25898 6.56429 6.88271 7.41186 8.94692 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.003001 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.004498 B = 9328.598303 C =11019.379163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.018 3.982 10 C 0.133 3.867 11 N -1.113 6.113 12 S 2.714 3.286 13 O -0.984 6.984 14 O -0.990 6.990 15 C -0.703 4.703 16 C 0.004 3.996 17 C -0.161 4.161 18 C 0.231 3.769 19 N -0.570 5.570 20 C 0.047 3.953 21 C 0.038 3.962 22 O -0.333 6.333 23 C 0.641 3.359 24 O -0.545 6.545 25 C -0.195 4.195 26 C 0.004 3.996 27 H 0.263 0.737 28 H 0.000 1.000 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.420 0.580 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.837 -13.830 8.383 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.090 0.910 9 C -0.021 4.021 10 C 0.007 3.993 11 N -0.874 5.874 12 S 2.806 3.194 13 O -0.974 6.974 14 O -0.980 6.980 15 C -0.793 4.793 16 C -0.016 4.016 17 C -0.182 4.182 18 C 0.136 3.864 19 N -0.305 5.305 20 C -0.073 4.073 21 C -0.035 4.035 22 O -0.243 6.243 23 C 0.397 3.603 24 O -0.431 6.431 25 C -0.217 4.217 26 C -0.016 4.016 27 H 0.072 0.928 28 H 0.018 0.982 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.256 0.744 33 H 0.180 0.820 34 H 0.197 0.803 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 21.327 -14.639 8.077 27.099 hybrid contribution -0.414 0.976 0.734 1.290 sum 20.913 -13.663 8.811 26.489 Atomic orbital electron populations 1.70095 1.07892 1.27800 1.51546 1.25963 0.95711 1.03414 0.94744 0.85433 0.78823 0.78326 0.78380 1.20026 1.21312 1.18098 1.21590 0.94062 0.91560 1.50688 0.90950 1.19172 0.94576 0.92282 0.96033 1.21339 0.94912 0.81675 1.01362 1.55386 1.21905 1.21705 1.88391 1.00941 0.72961 0.71658 0.73799 1.93533 1.74097 1.85321 1.44430 1.93527 1.61205 1.55733 1.87541 1.30673 1.14125 1.16165 1.18332 1.21088 0.90028 0.92229 0.98228 1.21130 1.02595 1.02263 0.92183 1.17787 0.87463 0.93912 0.87232 1.45637 1.13970 1.52725 1.18182 1.23608 0.77871 1.04552 1.01250 1.24937 0.87341 0.99148 0.92118 1.87330 1.21915 1.71105 1.43929 1.18693 0.84215 0.77957 0.79444 1.90936 1.24118 1.51803 1.76286 1.21676 0.92811 1.05025 1.02144 1.20890 0.99937 0.90954 0.89790 0.92838 0.98197 0.97646 0.91142 0.90890 0.74433 0.82001 0.80282 0.84875 0.85256 0.84275 0.83969 0.83157 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 0.89 5.12 29.85 0.15 1.04 16 10 C 0.13 4.97 6.16 86.38 0.53 5.50 16 11 N -1.11 -36.57 6.00 -187.49 -1.12 -37.69 16 12 S 2.71 83.86 5.74 -56.49 -0.32 83.54 16 13 O -0.98 -34.55 16.74 -128.00 -2.14 -36.69 16 14 O -0.99 -34.37 17.28 -128.00 -2.21 -36.58 16 15 C -0.70 -18.55 5.95 22.29 0.13 -18.42 16 16 C 0.00 0.09 9.51 22.25 0.21 0.30 16 17 C -0.16 -2.67 9.49 22.39 0.21 -2.45 16 18 C 0.23 4.74 6.63 38.14 0.25 4.99 16 19 N -0.57 -9.04 3.16 -759.80 -2.40 -11.45 16 20 C 0.05 0.14 6.49 86.63 0.56 0.70 16 21 C 0.04 0.07 8.23 72.35 0.60 0.66 16 22 O -0.33 -5.21 11.09 -47.43 -0.53 -5.73 16 23 C 0.64 13.95 8.77 129.91 1.14 15.09 16 24 O -0.54 -16.72 14.75 19.66 0.29 -16.43 16 25 C -0.20 -5.05 9.31 22.39 0.21 -4.84 16 26 C 0.00 0.11 9.51 22.25 0.21 0.33 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.68 7.75 -2.39 -0.02 2.66 16 32 H 0.42 13.19 8.65 -96.75 -0.84 12.35 16 33 H 0.16 3.08 7.61 -2.91 -0.02 3.05 16 34 H 0.18 1.32 7.31 -2.91 -0.02 1.30 16 35 H 0.13 -0.29 8.14 -2.38 -0.02 -0.31 16 36 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.14 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.15 4.30 5.24 -2.91 -0.02 4.29 16 40 H 0.15 3.67 7.61 -2.91 -0.02 3.64 16 Total: -1.00 -82.39 355.85 -0.97 -83.36 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.26 Total: 13.31 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 4.91 Total: -25.07 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.24 Total: -103.82 kcal Atomic # 8 Polarization: -90.84 SS G_CDS: -4.59 Total: -95.43 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 83.86 SS G_CDS: -0.32 Total: 83.54 kcal Total: -82.39 -0.97 -83.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273639394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.820 kcal (2) G-P(sol) polarization free energy of solvation -82.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds