Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34878 * 117.00017 * 2 1 4 4 O 1.21632 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.46473 * 119.99581 * 179.97438 * 3 2 1 6 6 C 1.44609 * 123.60974 * 90.01802 * 5 3 2 7 7 C 1.50696 * 123.41679 * 0.02562 * 6 5 3 8 8 C 1.32590 * 113.16989 * 179.97438 * 6 5 3 9 9 S 1.75461 * 110.83360 * 359.97438 * 8 6 5 10 10 C 1.37270 * 123.60476 * 269.96972 * 5 3 2 11 11 N 1.38351 * 124.66752 * 0.02562 * 10 5 3 12 12 C 1.34772 * 119.99932 * 180.02562 * 11 10 5 13 13 O 1.21384 * 120.00136 * 359.97438 * 12 11 10 14 14 C 1.49297 * 120.00007 * 180.02562 * 12 11 10 15 15 O 1.21367 * 119.99995 * 354.16275 * 14 12 11 16 16 N 1.34778 * 120.00285 * 174.16291 * 14 12 11 17 17 C 1.46500 * 119.99898 * 3.62521 * 16 14 12 18 18 C 1.46501 * 120.00116 * 183.62340 * 16 14 12 19 19 C 1.50698 * 109.47039 * 89.99903 * 18 16 14 20 20 H 1.07996 * 119.99990 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47005 * 60.00490 * 23 21 19 25 25 H 1.48498 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47179 * 300.00346 * 23 21 19 27 27 H 1.08996 * 109.47597 * 300.00292 * 1 2 3 28 28 H 1.09001 * 109.46679 * 60.00457 * 1 2 3 29 29 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46903 * 90.00119 * 7 6 5 31 31 H 1.09002 * 109.46986 * 210.00085 * 7 6 5 32 32 H 1.08992 * 109.47042 * 330.00335 * 7 6 5 33 33 H 1.07999 * 124.58183 * 180.02562 * 8 6 5 34 34 H 0.96995 * 119.99732 * 359.97438 * 11 10 5 35 35 H 1.09003 * 109.47091 * 83.99337 * 17 16 14 36 36 H 1.08991 * 109.47075 * 203.99276 * 17 16 14 37 37 H 1.09007 * 109.47029 * 323.99328 * 17 16 14 38 38 H 1.09002 * 109.47204 * 210.00495 * 18 16 14 39 39 H 1.09005 * 109.46695 * 329.99951 * 18 16 14 40 40 H 0.96999 * 120.00425 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5271 1.2783 0.0006 6 6 4.3269 1.3203 -1.2035 7 6 3.7401 1.2903 -2.5911 8 6 5.6290 1.3889 -0.9627 9 16 5.9444 1.4066 0.7632 10 6 4.2853 1.3189 1.1442 11 7 3.7733 1.2925 2.4292 12 6 4.6065 1.3375 3.4875 13 8 5.8061 1.4006 3.3134 14 6 4.0540 1.3085 4.8742 15 8 2.8540 1.3514 5.0504 16 7 4.8879 1.2346 5.9305 17 6 6.3378 1.2629 5.7225 18 6 4.3445 1.1261 7.2867 19 6 4.1701 -0.3277 7.6431 20 1 4.4378 -1.0941 6.9309 21 6 3.6699 -0.6793 8.8789 22 7 3.3444 0.2540 9.7464 23 14 3.4545 -2.4814 9.3210 24 1 4.7701 -3.1671 9.2582 25 1 2.9035 -2.5914 10.6956 26 1 2.5180 -3.1182 8.3604 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5453 2.3093 -2.9253 31 1 4.4437 0.8125 -3.2729 32 1 2.8069 0.7273 -2.5788 33 1 6.3922 1.4294 -1.7258 34 1 2.8147 1.2424 2.5683 35 1 6.6733 2.2970 5.6429 36 1 6.8352 0.7835 6.5655 37 1 6.5836 0.7294 4.8042 38 1 5.0318 1.5933 7.9920 39 1 3.3789 1.6298 7.3325 40 1 2.9921 0.0067 10.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288340047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -104.110727 kcal Electronic energy + Delta-G solvation = -27083.270836 eV Core-core repulsion = 22991.047585 eV Total energy + Delta-G solvation = -4092.223251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11862 -40.48126 -38.53063 -37.86251 -36.44279 -35.90355 -34.66544 -32.68011 -30.62877 -28.67834 -28.25591 -27.43554 -26.44184 -25.22406 -23.83690 -22.49982 -21.34292 -20.59022 -19.07380 -18.45257 -17.82262 -17.33187 -16.79834 -16.70080 -16.28669 -15.97787 -15.94643 -15.35871 -15.02312 -14.50055 -14.42659 -14.16245 -13.83577 -13.61488 -13.31747 -13.30822 -12.74751 -12.64191 -12.59887 -12.29494 -12.28071 -12.16288 -12.13202 -11.50721 -11.25450 -11.05032 -10.97884 -10.92417 -10.82510 -10.66802 -10.53936 -10.28477 -9.79273 -9.07990 -8.55527 -8.50357 -8.35286 -7.94272 -6.17286 -4.23777 0.53874 1.07592 1.59262 1.66610 1.97686 2.07024 2.35030 2.76539 3.25779 3.30261 3.32376 3.45320 3.76824 4.33359 4.53208 4.55618 4.71362 4.86660 4.92700 5.01094 5.17615 5.18839 5.27952 5.35821 5.36476 5.49817 5.64674 5.84642 5.98606 6.01969 6.03273 6.19531 6.38163 6.54302 6.75223 7.13825 7.23210 7.43340 7.49642 7.76971 7.99146 8.03560 8.41125 8.79848 9.41745 10.90901 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003127 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.681248 B = 8951.899869 C =10087.365698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.350 6.350 3 C 0.537 3.463 4 O -0.491 6.491 5 C -0.203 4.203 6 C -0.042 4.042 7 C -0.097 4.097 8 C -0.290 4.290 9 S 0.311 5.689 10 C 0.059 3.941 11 N -0.611 5.611 12 C 0.504 3.496 13 O -0.481 6.481 14 C 0.501 3.499 15 O -0.518 6.518 16 N -0.555 5.555 17 C 0.065 3.935 18 C 0.241 3.759 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.064 3.936 22 N -0.892 5.892 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.170 0.830 34 H 0.429 0.571 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 1.206 -22.641 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.378 3.622 4 O -0.378 6.378 5 C -0.222 4.222 6 C -0.053 4.053 7 C -0.155 4.155 8 C -0.425 4.425 9 S 0.575 5.425 10 C -0.159 4.159 11 N -0.255 5.255 12 C 0.287 3.713 13 O -0.356 6.356 14 C 0.280 3.720 15 O -0.396 6.396 16 N -0.286 5.286 17 C -0.078 4.078 18 C 0.123 3.877 19 C -0.574 4.574 20 H 0.078 0.922 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.729 3.271 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.188 0.812 34 H 0.268 0.732 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.660 1.676 -21.431 21.996 hybrid contribution -2.258 -1.038 -0.416 2.520 sum 2.402 0.638 -21.847 21.988 Atomic orbital electron populations 1.23364 0.76013 1.04061 1.02813 1.86740 1.23535 1.32601 1.83764 1.20395 0.88071 0.81652 0.72122 1.90908 1.66663 1.36062 1.44162 1.18733 0.90231 1.21238 0.92028 1.19202 0.91643 1.00647 0.93763 1.20524 1.00975 1.02702 0.91344 1.25738 0.99407 1.14378 1.03019 1.84159 0.94990 1.68363 0.94954 1.21936 1.01958 1.05012 0.87019 1.42608 1.12606 1.68696 1.01619 1.21458 0.86292 0.76034 0.87467 1.90575 1.14363 1.46017 1.84603 1.19109 0.87171 0.81594 0.84109 1.90779 1.14095 1.49862 1.84818 1.48157 1.06771 1.65699 1.07977 1.22272 0.79859 1.01804 1.03817 1.19590 0.95992 0.98018 0.74080 1.21326 1.44249 0.91543 1.00328 0.92222 1.24927 0.94828 0.98097 0.96002 1.69913 1.42965 1.32748 1.07337 0.86494 0.78612 0.84431 0.77555 1.20060 1.21035 1.20077 0.91427 0.91787 0.87783 0.90680 0.90620 0.91740 0.81214 0.73164 0.92904 0.90686 0.89014 0.93861 0.93180 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.43 10.58 -40.98 -0.43 -4.86 16 3 C 0.54 7.57 6.23 34.05 0.21 7.79 16 4 O -0.49 -7.92 16.91 -19.37 -0.33 -8.25 16 5 C -0.20 -2.74 5.87 -104.42 -0.61 -3.35 16 6 C -0.04 -0.46 6.00 -104.02 -0.62 -1.08 16 7 C -0.10 -0.80 9.96 36.00 0.36 -0.44 16 8 C -0.29 -2.79 10.88 28.83 0.31 -2.47 16 9 S 0.31 3.60 19.95 -107.50 -2.14 1.46 16 10 C 0.06 0.82 6.98 -14.96 -0.10 0.72 16 11 N -0.61 -9.39 5.35 -12.08 -0.06 -9.45 16 12 C 0.50 8.49 7.73 -11.66 -0.09 8.40 16 13 O -0.48 -7.67 10.55 5.47 0.06 -7.61 16 14 C 0.50 10.26 7.73 -11.66 -0.09 10.17 16 15 O -0.52 -12.08 16.04 5.48 0.09 -11.99 16 16 N -0.55 -11.68 2.86 -183.52 -0.52 -12.20 16 17 C 0.07 1.10 9.55 59.85 0.57 1.67 16 18 C 0.24 6.08 5.16 -5.19 -0.03 6.05 16 19 C -0.54 -14.66 9.39 -34.44 -0.32 -14.99 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 23 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 33 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.43 6.60 7.64 -40.82 -0.31 6.29 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 37 H 0.09 1.46 5.35 -51.93 -0.28 1.18 16 38 H 0.04 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.05 1.40 7.37 -51.93 -0.38 1.02 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -32.35 365.05 -6.29 -38.64 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.71 Total: 1.97 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 0.55 Total: 15.51 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.15 Total: -46.55 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.62 Total: -32.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.14 Total: 1.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.35 -6.29 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288340047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.469 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds