Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34878 * 117.00017 * 2 1 4 4 O 1.21632 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.46473 * 119.99581 * 179.97438 * 3 2 1 6 6 C 1.44609 * 123.60974 * 90.01802 * 5 3 2 7 7 C 1.50696 * 123.41679 * 0.02562 * 6 5 3 8 8 C 1.32590 * 113.16989 * 179.97438 * 6 5 3 9 9 S 1.75461 * 110.83360 * 359.97438 * 8 6 5 10 10 C 1.37270 * 123.60476 * 269.96972 * 5 3 2 11 11 N 1.38351 * 124.66752 * 0.02562 * 10 5 3 12 12 C 1.34772 * 119.99932 * 180.02562 * 11 10 5 13 13 O 1.21384 * 120.00136 * 359.97438 * 12 11 10 14 14 C 1.49297 * 120.00007 * 180.02562 * 12 11 10 15 15 O 1.21367 * 119.99995 * 354.16275 * 14 12 11 16 16 N 1.34778 * 120.00285 * 174.16291 * 14 12 11 17 17 C 1.46500 * 119.99898 * 3.62521 * 16 14 12 18 18 C 1.46501 * 120.00116 * 183.62340 * 16 14 12 19 19 C 1.50698 * 109.47039 * 89.99903 * 18 16 14 20 20 H 1.07996 * 119.99990 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99869 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47005 * 60.00490 * 23 21 19 25 25 H 1.48498 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47179 * 300.00346 * 23 21 19 27 27 H 1.08996 * 109.47597 * 300.00292 * 1 2 3 28 28 H 1.09001 * 109.46679 * 60.00457 * 1 2 3 29 29 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46903 * 90.00119 * 7 6 5 31 31 H 1.09002 * 109.46986 * 210.00085 * 7 6 5 32 32 H 1.08992 * 109.47042 * 330.00335 * 7 6 5 33 33 H 1.07999 * 124.58183 * 180.02562 * 8 6 5 34 34 H 0.96995 * 119.99732 * 359.97438 * 11 10 5 35 35 H 1.09003 * 109.47091 * 83.99337 * 17 16 14 36 36 H 1.08991 * 109.47075 * 203.99276 * 17 16 14 37 37 H 1.09007 * 109.47029 * 323.99328 * 17 16 14 38 38 H 1.09002 * 109.47204 * 210.00495 * 18 16 14 39 39 H 1.09005 * 109.46695 * 329.99951 * 18 16 14 40 40 H 0.96999 * 120.00425 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5271 1.2783 0.0006 6 6 4.3269 1.3203 -1.2035 7 6 3.7401 1.2903 -2.5911 8 6 5.6290 1.3889 -0.9627 9 16 5.9444 1.4066 0.7632 10 6 4.2853 1.3189 1.1442 11 7 3.7733 1.2925 2.4292 12 6 4.6065 1.3375 3.4875 13 8 5.8061 1.4006 3.3134 14 6 4.0540 1.3085 4.8742 15 8 2.8540 1.3514 5.0504 16 7 4.8879 1.2346 5.9305 17 6 6.3378 1.2629 5.7225 18 6 4.3445 1.1261 7.2867 19 6 4.1701 -0.3277 7.6431 20 1 4.4378 -1.0941 6.9309 21 6 3.6699 -0.6793 8.8789 22 7 3.3444 0.2540 9.7464 23 14 3.4545 -2.4814 9.3210 24 1 4.7701 -3.1671 9.2582 25 1 2.9035 -2.5914 10.6956 26 1 2.5180 -3.1182 8.3604 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5453 2.3093 -2.9253 31 1 4.4437 0.8125 -3.2729 32 1 2.8069 0.7273 -2.5788 33 1 6.3922 1.4294 -1.7258 34 1 2.8147 1.2424 2.5683 35 1 6.6733 2.2970 5.6429 36 1 6.8352 0.7835 6.5655 37 1 6.5836 0.7294 4.8042 38 1 5.0318 1.5933 7.9920 39 1 3.3789 1.6298 7.3325 40 1 2.9921 0.0067 10.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288340047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -125.304100 kcal Electronic energy + Delta-G solvation = -27084.189850 eV Core-core repulsion = 22991.047585 eV Total energy + Delta-G solvation = -4093.142265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42011 -41.61308 -40.01382 -38.91922 -37.53503 -37.31199 -36.09960 -34.71181 -31.58424 -30.15502 -29.49587 -28.37664 -27.78538 -26.70854 -25.26772 -23.93610 -22.35139 -21.95621 -20.18020 -19.57337 -19.11858 -18.79493 -18.42745 -17.90273 -17.68121 -17.42269 -17.15741 -16.74263 -16.35149 -16.01762 -15.80046 -15.03936 -15.02685 -14.79631 -14.46018 -14.32228 -14.25051 -13.95912 -13.76114 -13.57461 -13.42959 -13.40115 -13.11532 -13.03823 -12.87378 -12.66886 -12.43546 -12.26553 -12.01291 -11.92731 -11.91361 -11.77008 -11.62593 -10.67811 -10.54496 -9.72292 -9.42545 -9.28316 -8.27711 -6.43007 -0.56982 0.13095 0.32635 0.63567 0.88196 1.14589 1.20491 1.38647 1.41528 1.49465 1.79203 1.94524 2.28183 2.40723 3.01255 3.06962 3.64365 3.78867 4.01260 4.21175 4.25929 4.34510 4.41749 4.49572 4.57517 4.64611 4.68014 4.77791 4.80640 4.92483 5.04621 5.07083 5.11583 5.26543 5.30854 5.36478 5.43004 5.66063 5.94207 6.03963 6.35508 6.44743 6.61606 6.81496 7.27532 8.80010 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003127 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.681248 B = 8951.899869 C =10087.365698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.356 6.356 3 C 0.538 3.462 4 O -0.520 6.520 5 C -0.207 4.207 6 C -0.059 4.059 7 C -0.095 4.095 8 C -0.262 4.262 9 S 0.319 5.681 10 C 0.023 3.977 11 N -0.607 5.607 12 C 0.516 3.484 13 O -0.473 6.473 14 C 0.494 3.506 15 O -0.557 6.557 16 N -0.563 5.563 17 C 0.066 3.934 18 C 0.255 3.745 19 C -0.552 4.552 20 H 0.057 0.943 21 C 0.014 3.986 22 N -0.924 5.924 23 Si 0.968 3.032 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.276 1.276 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.209 0.791 34 H 0.425 0.575 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.038 0.962 39 H 0.013 0.987 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -0.036 -24.976 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.380 3.620 4 O -0.409 6.409 5 C -0.227 4.227 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.397 4.397 9 S 0.584 5.416 10 C -0.193 4.193 11 N -0.251 5.251 12 C 0.299 3.701 13 O -0.347 6.347 14 C 0.276 3.724 15 O -0.436 6.436 16 N -0.293 5.293 17 C -0.075 4.075 18 C 0.135 3.865 19 C -0.590 4.590 20 H 0.075 0.925 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.792 3.208 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.201 1.201 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.226 0.774 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.241 0.426 -23.813 24.621 hybrid contribution -2.759 -0.620 0.175 2.834 sum 3.482 -0.194 -23.638 23.894 Atomic orbital electron populations 1.23674 0.74290 1.06107 1.02946 1.86729 1.25324 1.31865 1.83255 1.20612 0.88511 0.81636 0.71255 1.90889 1.67324 1.36948 1.45754 1.19118 0.90118 1.20389 0.93068 1.19519 0.91916 1.01381 0.94058 1.20600 1.01293 1.03269 0.90218 1.26105 0.99706 1.11549 1.02347 1.84044 0.93351 1.67554 0.96621 1.22196 1.03396 1.07599 0.86118 1.42372 1.12146 1.68466 1.02090 1.20396 0.86399 0.77167 0.86161 1.90571 1.13588 1.46151 1.84432 1.19692 0.86687 0.80419 0.85647 1.90746 1.15790 1.51265 1.85835 1.48124 1.08601 1.65775 1.06803 1.22470 0.77189 1.03420 1.04440 1.19110 0.94280 0.96744 0.76390 1.21602 1.44446 0.92398 1.00579 0.92486 1.25817 0.94295 1.02639 0.95875 1.70025 1.43582 1.34909 1.07773 0.85453 0.79049 0.78956 0.77316 1.18526 1.20301 1.20100 0.92248 0.90768 0.84816 0.90183 0.87860 0.92438 0.77436 0.73615 0.90819 0.90584 0.87691 0.94357 0.96909 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.57 113.37 1.20 1.61 16 2 O -0.36 -8.86 10.58 -57.92 -0.61 -9.47 16 3 C 0.54 15.12 6.23 69.97 0.44 15.55 16 4 O -0.52 -17.01 16.91 19.41 0.33 -16.68 16 5 C -0.21 -5.37 5.87 -19.73 -0.12 -5.49 16 6 C -0.06 -1.14 6.00 -19.40 -0.12 -1.25 16 7 C -0.10 -1.31 9.96 71.23 0.71 -0.60 16 8 C -0.26 -4.09 10.88 66.66 0.73 -3.37 16 9 S 0.32 6.69 19.95 -56.49 -1.13 5.56 16 10 C 0.02 0.63 6.98 83.44 0.58 1.22 16 11 N -0.61 -18.84 5.35 -310.50 -1.66 -20.50 16 12 C 0.52 17.40 7.73 87.22 0.67 18.08 16 13 O -0.47 -14.54 10.55 -3.35 -0.04 -14.57 16 14 C 0.49 20.83 7.73 87.22 0.67 21.50 16 15 O -0.56 -27.21 16.04 -3.30 -0.05 -27.26 16 16 N -0.56 -24.15 2.86 -852.90 -2.44 -26.58 16 17 C 0.07 2.17 9.55 127.77 1.22 3.39 16 18 C 0.25 13.32 5.16 85.63 0.44 13.76 16 19 C -0.55 -30.78 9.39 25.60 0.24 -30.54 16 20 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.01 0.77 5.46 84.66 0.46 1.23 16 22 N -0.92 -54.11 13.29 21.45 0.28 -53.82 16 23 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.06 0.87 7.69 -2.39 -0.02 0.86 16 33 H 0.21 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.43 13.62 7.64 -92.71 -0.71 12.91 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 37 H 0.11 3.20 5.35 -2.51 -0.01 3.18 16 38 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 39 H 0.01 0.76 7.37 -2.38 -0.02 0.74 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -71.59 365.05 4.24 -67.35 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.39 Total: 15.40 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 7.13 Total: 35.09 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.81 Total: -100.90 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.37 Total: -67.98 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.13 Total: 5.56 kcal Total: -71.59 4.24 -67.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288340047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.955 kcal (2) G-P(sol) polarization free energy of solvation -71.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds