Wall clock time and date at job start Sat Apr 11 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48503 * 109.46953 * 244.99604 * 3 2 1 5 5 H 1.48500 * 109.47099 * 4.99610 * 3 2 1 6 6 H 1.48501 * 109.47003 * 125.00221 * 3 2 1 7 7 C 1.39952 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99855 * 168.31613 * 7 2 1 9 9 C 1.41390 * 119.99997 * 348.32522 * 7 2 1 10 10 C 1.40735 * 120.24550 * 328.35232 * 9 7 2 11 11 C 1.37594 * 119.74793 * 179.97438 * 10 9 7 12 12 C 1.38652 * 120.24891 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.50035 * 359.68511 * 12 11 10 14 14 C 1.37641 * 120.24602 * 0.59232 * 13 12 11 15 15 S 1.76198 * 120.12759 * 179.70269 * 14 13 12 16 16 O 1.42100 * 106.40212 * 131.77546 * 15 14 13 17 17 O 1.42106 * 106.39944 * 358.85310 * 15 14 13 18 18 N 1.65602 * 107.22016 * 245.31652 * 15 14 13 19 19 N 1.40100 * 119.99654 * 55.44363 * 18 15 14 20 20 C 1.34777 * 119.99520 * 123.62876 * 19 18 15 21 21 O 1.21276 * 120.00228 * 4.95910 * 20 19 18 22 22 C 1.50708 * 119.99763 * 184.96114 * 20 19 18 23 23 H 1.08996 * 110.27222 * 52.90128 * 22 20 19 24 24 C 1.55503 * 110.36665 * 290.79309 * 22 20 19 25 25 C 1.55306 * 100.69411 * 204.60979 * 24 22 20 26 26 C 1.54386 * 102.43396 * 34.13000 * 25 24 22 27 27 O 1.43232 * 107.59177 * 338.53804 * 26 25 24 28 28 H 0.97002 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.08009 * 120.12303 * 359.96022 * 10 9 7 30 30 H 1.08001 * 119.87548 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.75091 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.87432 * 180.30370 * 13 12 11 33 33 H 0.96995 * 119.99889 * 235.44906 * 18 15 14 34 34 H 0.96995 * 120.00461 * 303.62298 * 19 18 15 35 35 H 1.08994 * 111.33360 * 86.73826 * 24 22 20 36 36 H 1.09005 * 111.14462 * 322.40629 * 24 22 20 37 37 H 1.08997 * 110.85056 * 275.83815 * 25 24 22 38 38 H 1.08993 * 110.84668 * 152.41750 * 25 24 22 39 39 H 1.08994 * 109.83138 * 98.05860 * 26 25 24 40 40 H 1.09000 * 109.82743 * 218.93669 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0022 1.7505 -1.2689 5 1 1.2819 2.7438 0.1219 6 1 3.1852 1.6448 1.1469 7 6 2.0080 -1.2120 0.0005 8 1 3.0712 -1.2218 -0.1889 9 6 1.3229 -2.4237 0.2489 10 6 0.2042 -2.4435 1.1025 11 6 -0.4551 -3.6283 1.3366 12 6 -0.0209 -4.7998 0.7355 13 6 1.0762 -4.7911 -0.1118 14 6 1.7544 -3.6185 -0.3559 15 16 3.1532 -3.6125 -1.4273 16 8 2.9626 -2.5317 -2.3300 17 8 3.3395 -4.9559 -1.8515 18 7 4.4742 -3.2255 -0.5067 19 7 4.7818 -3.9836 0.6306 20 6 5.9937 -4.5616 0.7477 21 8 6.8484 -4.3524 -0.0869 22 6 6.2866 -5.4679 1.9156 23 1 5.5251 -6.2440 1.9917 24 6 6.3534 -4.6467 3.2344 25 6 7.2545 -5.5673 4.1018 26 6 8.2163 -6.1718 3.0563 27 8 7.5883 -6.0587 1.7740 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1353 -1.5321 1.5723 30 1 -1.3141 -3.6457 1.9910 31 1 -0.5441 -5.7254 0.9252 32 1 1.4027 -5.7087 -0.5785 33 1 5.0349 -2.4739 -0.7549 34 1 4.1226 -4.0924 1.3338 35 1 5.3654 -4.5312 3.6800 36 1 6.8243 -3.6773 3.0706 37 1 6.6638 -6.3473 4.5823 38 1 7.8029 -4.9863 4.8432 39 1 9.1569 -5.6213 3.0573 40 1 8.4017 -7.2208 3.2875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291804416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:12 Heat of formation + Delta-G solvation = -106.725613 kcal Electronic energy + Delta-G solvation = -28028.537889 eV Core-core repulsion = 23936.201248 eV Total energy + Delta-G solvation = -4092.336641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27740 -38.44259 -37.74574 -36.37335 -35.32123 -35.00813 -33.98935 -32.48667 -30.96159 -30.37371 -29.72523 -28.69923 -25.65702 -23.81033 -21.95036 -21.87694 -21.29461 -20.68050 -19.25183 -17.86555 -17.83423 -17.75137 -16.96668 -16.57414 -15.98634 -15.60401 -15.44850 -15.09425 -14.63057 -14.45557 -14.36794 -13.69477 -13.49280 -13.44324 -13.30270 -12.83504 -12.20377 -12.11931 -11.99884 -11.80958 -11.66227 -11.60423 -11.40079 -11.26486 -11.23554 -11.20652 -11.17178 -10.85276 -10.74268 -10.63835 -10.09225 -10.02198 -9.53015 -9.49269 -9.37130 -8.68626 -8.20286 -7.73642 -7.14315 -4.89768 1.07889 2.17329 2.49714 2.62328 2.62623 2.91496 2.94286 3.04243 3.62244 3.70859 4.04447 4.17095 4.30064 4.50639 4.55888 4.64347 4.84231 4.87150 5.05790 5.16539 5.39877 5.42356 5.46994 5.53210 5.56007 5.79468 5.93008 6.10699 6.27428 6.29097 6.63851 6.65670 6.79837 6.92662 7.15795 7.23975 7.35877 7.47339 7.52659 7.66192 7.74734 8.13626 8.36373 8.37858 8.48794 9.80010 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.004182 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.407865 B = 6694.549842 C = 7095.174048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.087 0.913 9 C 0.188 3.812 10 C -0.154 4.154 11 C -0.074 4.074 12 C -0.246 4.246 13 C -0.002 4.002 14 C -0.778 4.778 15 S 2.695 3.305 16 O -0.943 6.943 17 O -0.983 6.983 18 N -0.906 5.906 19 N -0.498 5.498 20 C 0.514 3.486 21 O -0.511 6.511 22 C 0.072 3.928 23 H 0.106 0.894 24 C -0.149 4.149 25 C -0.154 4.154 26 C 0.048 3.952 27 O -0.352 6.352 28 H 0.290 0.710 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.419 0.581 34 H 0.421 0.579 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -4.866 11.005 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.183 3.817 10 C -0.174 4.174 11 C -0.093 4.093 12 C -0.267 4.267 13 C -0.022 4.022 14 C -0.874 4.874 15 S 2.793 3.207 16 O -0.932 6.932 17 O -0.972 6.972 18 N -0.755 5.755 19 N -0.252 5.252 20 C 0.297 3.703 21 O -0.383 6.383 22 C 0.009 3.991 23 H 0.124 0.876 24 C -0.187 4.187 25 C -0.191 4.191 26 C -0.028 4.028 27 O -0.270 6.270 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.257 0.743 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.756 -4.948 9.271 13.061 hybrid contribution -0.455 1.249 1.045 1.691 sum 7.301 -3.699 10.316 13.168 Atomic orbital electron populations 1.69756 1.07777 1.30507 1.31532 1.25919 0.94886 1.01806 0.91315 0.86230 0.80270 0.79101 0.80731 1.18007 1.19820 1.18304 1.19831 0.96808 0.90913 1.40187 0.89469 1.16997 0.89932 0.89538 0.85224 1.21428 0.98570 0.96651 1.00714 1.20923 0.97320 0.93485 0.97566 1.20513 1.02041 0.97266 1.06855 1.20284 0.93476 0.95026 0.93383 1.29722 1.25592 1.01488 1.30605 1.01638 0.72765 0.72848 0.73480 1.93603 1.84330 1.55201 1.60084 1.93477 1.85655 1.37815 1.80299 1.55854 1.46555 1.40866 1.32192 1.44152 1.16572 1.48818 1.15624 1.20766 0.81727 0.80378 0.87395 1.90715 1.45292 1.60156 1.42087 1.22852 0.88612 0.94986 0.92626 0.87618 1.23422 1.02322 0.99578 0.93382 1.23124 0.98000 0.99516 0.98496 1.23220 0.96326 1.00944 0.82357 1.88545 1.28586 1.81443 1.28442 0.89900 0.86100 0.88645 0.88520 0.87204 0.74322 0.73694 0.88300 0.89411 0.89935 0.89543 0.91033 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.15 11.10 55.55 0.62 -17.54 16 2 C 0.08 1.90 5.22 -17.34 -0.09 1.80 16 3 Si 0.91 17.29 29.58 -169.99 -5.03 12.27 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.45 -10.57 7.52 -37.74 -0.28 -10.85 16 8 H 0.09 1.92 6.10 -52.48 -0.32 1.60 16 9 C 0.19 4.41 5.51 -106.83 -0.59 3.82 16 10 C -0.15 -3.48 8.64 -38.87 -0.34 -3.82 16 11 C -0.07 -1.51 10.02 -39.66 -0.40 -1.90 16 12 C -0.25 -4.89 10.05 -39.29 -0.39 -5.28 16 13 C 0.00 -0.04 9.54 -39.66 -0.38 -0.41 16 14 C -0.78 -17.22 5.95 -38.87 -0.23 -17.46 16 15 S 2.70 58.15 5.17 -107.50 -0.56 57.59 16 16 O -0.94 -23.03 16.58 -57.17 -0.95 -23.98 16 17 O -0.98 -22.72 16.97 -57.17 -0.97 -23.69 16 18 N -0.91 -16.54 5.41 60.35 0.33 -16.22 16 19 N -0.50 -7.74 6.27 31.22 0.20 -7.54 16 20 C 0.51 8.24 7.30 -10.98 -0.08 8.16 16 21 O -0.51 -10.34 16.90 -13.73 -0.23 -10.57 16 22 C 0.07 0.86 3.87 -26.55 -0.10 0.76 16 23 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.15 -1.26 6.60 -24.18 -0.16 -1.42 16 25 C -0.15 -1.04 7.00 -24.78 -0.17 -1.21 16 26 C 0.05 0.43 7.80 37.88 0.30 0.73 16 27 O -0.35 -4.80 10.61 -54.53 -0.58 -5.38 16 28 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 29 H 0.12 2.77 6.49 -52.48 -0.34 2.43 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.11 2.14 7.32 -52.49 -0.38 1.76 16 33 H 0.42 7.14 8.96 -176.25 -1.58 5.56 16 34 H 0.42 5.40 8.83 -182.60 -1.61 3.79 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -33.34 353.94 -11.93 -45.28 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.17 Total: 11.53 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -2.92 Total: -27.08 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.14 Total: -41.29 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -2.73 Total: -63.62 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 58.15 SS G_CDS: -0.56 Total: 57.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.34 -11.93 -45.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291804416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.448 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds