Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48503 * 109.46953 * 244.99604 * 3 2 1 5 5 H 1.48500 * 109.47099 * 4.99610 * 3 2 1 6 6 H 1.48501 * 109.47003 * 125.00221 * 3 2 1 7 7 C 1.39952 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99855 * 168.31613 * 7 2 1 9 9 C 1.41390 * 119.99997 * 348.32522 * 7 2 1 10 10 C 1.40735 * 120.24550 * 328.35232 * 9 7 2 11 11 C 1.37594 * 119.74793 * 179.97438 * 10 9 7 12 12 C 1.38652 * 120.24891 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.50035 * 359.68511 * 12 11 10 14 14 C 1.37641 * 120.24602 * 0.59232 * 13 12 11 15 15 S 1.76198 * 120.12759 * 179.70269 * 14 13 12 16 16 O 1.42100 * 106.40212 * 131.77546 * 15 14 13 17 17 O 1.42106 * 106.39944 * 358.85310 * 15 14 13 18 18 N 1.65602 * 107.22016 * 245.31652 * 15 14 13 19 19 N 1.40100 * 119.99654 * 55.44363 * 18 15 14 20 20 C 1.34777 * 119.99520 * 123.62876 * 19 18 15 21 21 O 1.21276 * 120.00228 * 4.95910 * 20 19 18 22 22 C 1.50708 * 119.99763 * 184.96114 * 20 19 18 23 23 H 1.08996 * 110.27222 * 52.90128 * 22 20 19 24 24 C 1.55503 * 110.36665 * 290.79309 * 22 20 19 25 25 C 1.55306 * 100.69411 * 204.60979 * 24 22 20 26 26 C 1.54386 * 102.43396 * 34.13000 * 25 24 22 27 27 O 1.43232 * 107.59177 * 338.53804 * 26 25 24 28 28 H 0.97002 * 120.00038 * 0.02562 * 1 2 3 29 29 H 1.08009 * 120.12303 * 359.96022 * 10 9 7 30 30 H 1.08001 * 119.87548 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.75091 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.87432 * 180.30370 * 13 12 11 33 33 H 0.96995 * 119.99889 * 235.44906 * 18 15 14 34 34 H 0.96995 * 120.00461 * 303.62298 * 19 18 15 35 35 H 1.08994 * 111.33360 * 86.73826 * 24 22 20 36 36 H 1.09005 * 111.14462 * 322.40629 * 24 22 20 37 37 H 1.08997 * 110.85056 * 275.83815 * 25 24 22 38 38 H 1.08993 * 110.84668 * 152.41750 * 25 24 22 39 39 H 1.08994 * 109.83138 * 98.05860 * 26 25 24 40 40 H 1.09000 * 109.82743 * 218.93669 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0022 1.7505 -1.2689 5 1 1.2819 2.7438 0.1219 6 1 3.1852 1.6448 1.1469 7 6 2.0080 -1.2120 0.0005 8 1 3.0712 -1.2218 -0.1889 9 6 1.3229 -2.4237 0.2489 10 6 0.2042 -2.4435 1.1025 11 6 -0.4551 -3.6283 1.3366 12 6 -0.0209 -4.7998 0.7355 13 6 1.0762 -4.7911 -0.1118 14 6 1.7544 -3.6185 -0.3559 15 16 3.1532 -3.6125 -1.4273 16 8 2.9626 -2.5317 -2.3300 17 8 3.3395 -4.9559 -1.8515 18 7 4.4742 -3.2255 -0.5067 19 7 4.7818 -3.9836 0.6306 20 6 5.9937 -4.5616 0.7477 21 8 6.8484 -4.3524 -0.0869 22 6 6.2866 -5.4679 1.9156 23 1 5.5251 -6.2440 1.9917 24 6 6.3534 -4.6467 3.2344 25 6 7.2545 -5.5673 4.1018 26 6 8.2163 -6.1718 3.0563 27 8 7.5883 -6.0587 1.7740 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1353 -1.5321 1.5723 30 1 -1.3141 -3.6457 1.9910 31 1 -0.5441 -5.7254 0.9252 32 1 1.4027 -5.7087 -0.5785 33 1 5.0349 -2.4739 -0.7549 34 1 4.1226 -4.0924 1.3338 35 1 5.3654 -4.5312 3.6800 36 1 6.8243 -3.6773 3.0706 37 1 6.6638 -6.3473 4.5823 38 1 7.8029 -4.9863 4.8432 39 1 9.1569 -5.6213 3.0573 40 1 8.4017 -7.2208 3.2875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291804416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -131.225327 kcal Electronic energy + Delta-G solvation = -28029.600277 eV Core-core repulsion = 23936.201248 eV Total energy + Delta-G solvation = -4093.399028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35186 -39.53369 -39.40156 -38.18511 -36.86212 -36.73024 -35.66596 -33.29973 -32.13752 -31.98970 -31.38428 -29.75926 -27.35184 -24.74633 -23.53494 -22.96711 -22.57772 -21.89297 -20.79482 -19.52887 -19.28677 -18.97506 -18.46580 -17.78607 -17.34243 -17.15722 -16.56091 -16.38390 -16.01996 -15.94376 -15.64569 -15.14997 -14.95650 -14.67264 -14.45216 -14.20094 -13.79653 -13.52605 -13.30119 -13.10072 -13.05525 -13.01476 -12.91861 -12.81872 -12.72812 -12.54007 -12.31941 -12.21506 -12.15335 -11.80246 -11.65284 -11.19692 -11.16841 -11.02735 -10.51208 -10.11544 -9.87052 -9.42537 -8.81731 -6.63831 -0.58119 0.48231 0.97759 1.17107 1.37474 1.38137 1.47314 1.51528 2.15479 2.46817 2.63616 2.80513 3.01906 3.36767 3.46752 3.59233 3.75635 3.93999 4.12339 4.17836 4.36226 4.37194 4.52785 4.73599 4.78581 4.84359 4.85818 4.93911 4.97946 5.02121 5.13226 5.24021 5.25815 5.49583 5.70270 5.77471 5.81574 6.01017 6.01745 6.06116 6.23953 6.45627 6.66286 6.79956 7.09718 8.15381 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.004182 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.407865 B = 6694.549842 C = 7095.174048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.045 3.955 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.245 1.245 7 C -0.479 4.479 8 H 0.091 0.909 9 C 0.170 3.830 10 C -0.177 4.177 11 C -0.068 4.068 12 C -0.238 4.238 13 C -0.013 4.013 14 C -0.783 4.783 15 S 2.713 3.287 16 O -0.979 6.979 17 O -1.002 7.002 18 N -0.908 5.908 19 N -0.488 5.488 20 C 0.510 3.490 21 O -0.561 6.561 22 C 0.071 3.929 23 H 0.132 0.868 24 C -0.146 4.146 25 C -0.142 4.142 26 C 0.037 3.963 27 O -0.390 6.390 28 H 0.296 0.704 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.425 0.575 34 H 0.435 0.565 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -5.761 13.445 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.169 1.169 7 C -0.508 4.508 8 H 0.109 0.891 9 C 0.165 3.835 10 C -0.197 4.197 11 C -0.087 4.087 12 C -0.258 4.258 13 C -0.033 4.033 14 C -0.880 4.880 15 S 2.811 3.189 16 O -0.968 6.968 17 O -0.992 6.992 18 N -0.758 5.758 19 N -0.244 5.244 20 C 0.296 3.704 21 O -0.436 6.436 22 C 0.009 3.991 23 H 0.149 0.851 24 C -0.184 4.184 25 C -0.179 4.179 26 C -0.039 4.039 27 O -0.309 6.309 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.264 0.736 34 H 0.279 0.721 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.393 -5.852 11.742 15.060 hybrid contribution -0.351 1.375 0.306 1.451 sum 7.043 -4.477 12.048 14.656 Atomic orbital electron populations 1.69788 1.08803 1.31540 1.32651 1.26655 0.95567 1.04407 0.90717 0.85424 0.79386 0.75894 0.80414 1.19270 1.18565 1.16858 1.20099 0.97292 0.91740 1.41630 0.89118 1.17236 0.90596 0.89976 0.85687 1.21466 0.99308 0.97373 1.01523 1.21279 0.97521 0.92734 0.97162 1.20912 1.01179 0.98432 1.05291 1.20566 0.93909 0.95018 0.93837 1.29731 1.25977 1.01834 1.30420 1.00874 0.72948 0.71807 0.73242 1.93549 1.85124 1.56193 1.61890 1.93445 1.86104 1.38644 1.80971 1.55377 1.45900 1.41330 1.33199 1.44330 1.17061 1.48250 1.14744 1.21765 0.80816 0.79909 0.87958 1.90685 1.46761 1.61932 1.44237 1.23078 0.88900 0.95205 0.91902 0.85062 1.23495 1.04185 0.98891 0.91782 1.23135 0.97320 0.99679 0.97788 1.23487 0.96623 1.02294 0.81483 1.88509 1.29499 1.81568 1.31371 0.89287 0.87086 0.85610 0.85096 0.85959 0.73646 0.72067 0.85698 0.90452 0.87854 0.87742 0.91159 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.17 11.10 21.83 0.24 -37.93 16 2 C 0.05 2.09 5.22 85.26 0.44 2.54 16 3 Si 0.97 35.42 29.58 68.60 2.03 37.45 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 7 C -0.48 -22.85 7.52 23.46 0.18 -22.67 16 8 H 0.09 4.08 6.10 -2.91 -0.02 4.06 16 9 C 0.17 7.97 5.51 -21.29 -0.12 7.86 16 10 C -0.18 -7.90 8.64 22.73 0.20 -7.70 16 11 C -0.07 -2.62 10.02 22.22 0.22 -2.39 16 12 C -0.24 -8.71 10.05 22.46 0.23 -8.48 16 13 C -0.01 -0.54 9.54 22.22 0.21 -0.32 16 14 C -0.78 -34.40 5.95 22.73 0.14 -34.27 16 15 S 2.71 118.48 5.17 -56.49 -0.29 118.19 16 16 O -0.98 -49.10 16.58 -128.00 -2.12 -51.22 16 17 O -1.00 -46.51 16.97 -128.00 -2.17 -48.69 16 18 N -0.91 -33.58 5.41 37.02 0.20 -33.38 16 19 N -0.49 -14.97 6.27 -173.53 -1.09 -16.06 16 20 C 0.51 16.24 7.30 87.66 0.64 16.88 16 21 O -0.56 -23.27 16.90 15.43 0.26 -23.01 16 22 C 0.07 1.60 3.87 30.71 0.12 1.71 16 23 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 24 C -0.15 -2.09 6.60 32.25 0.21 -1.88 16 25 C -0.14 -1.44 7.00 31.86 0.22 -1.22 16 26 C 0.04 0.59 7.80 72.45 0.56 1.16 16 27 O -0.39 -10.35 10.61 -130.53 -1.38 -11.73 16 28 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 29 H 0.11 5.12 6.49 -2.91 -0.02 5.10 16 30 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.12 4.54 7.32 -2.91 -0.02 4.52 16 33 H 0.42 14.91 8.96 -217.37 -1.95 12.96 16 34 H 0.44 10.66 8.83 -213.33 -1.88 8.78 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.28 8.06 -2.38 -0.02 1.26 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.43 353.94 -3.79 -77.23 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -2.72 Total: 37.94 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 3.26 Total: -48.79 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -0.65 Total: -87.37 kcal Atomic # 8 Polarization: -129.23 SS G_CDS: -5.42 Total: -134.65 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Atomic # 16 Polarization: 118.48 SS G_CDS: -0.29 Total: 118.19 kcal Total: -73.43 -3.79 -77.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291804416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.999 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds