Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99940 * 2 1 4 4 N 1.46502 * 109.47177 * 124.99788 * 3 2 1 5 5 C 1.46495 * 120.00102 * 272.19377 * 4 3 2 6 6 C 1.50704 * 109.47161 * 274.99739 * 5 4 3 7 7 H 1.08004 * 119.99529 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00258 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99962 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00051 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47040 * 89.99827 * 10 8 6 12 12 H 1.48498 * 109.47365 * 210.00044 * 10 8 6 13 13 H 1.48502 * 109.47215 * 330.00384 * 10 8 6 14 14 S 1.65599 * 120.00016 * 92.18864 * 4 3 2 15 15 O 1.42099 * 106.40131 * 343.73279 * 14 4 3 16 16 O 1.42092 * 106.40583 * 210.81068 * 14 4 3 17 17 C 1.76200 * 107.21571 * 97.26941 * 14 4 3 18 18 C 1.38257 * 120.00065 * 268.84023 * 17 14 4 19 19 C 1.50696 * 120.00190 * 0.02562 * 18 17 14 20 20 C 1.38217 * 120.00001 * 179.97438 * 18 17 14 21 21 C 1.38258 * 119.99857 * 0.02913 * 20 18 17 22 22 C 1.38212 * 119.99989 * 359.97438 * 21 20 18 23 23 C 1.38213 * 119.99852 * 88.84667 * 17 14 4 24 24 N 1.48012 * 120.00113 * 0.03409 * 23 17 14 25 25 O 1.21805 * 119.99975 * 109.72113 * 24 23 17 26 26 O 1.21797 * 120.00649 * 289.72541 * 24 23 17 27 27 H 1.08002 * 120.00063 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00363 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99874 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47442 * 5.00225 * 3 2 1 31 31 H 1.08996 * 109.47611 * 244.99853 * 3 2 1 32 32 H 1.08997 * 109.47683 * 34.99296 * 5 4 3 33 33 H 1.08998 * 109.47328 * 155.00084 * 5 4 3 34 34 H 0.97001 * 120.00000 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46949 * 274.20051 * 19 18 17 36 36 H 1.08998 * 109.47413 * 34.19923 * 19 18 17 37 37 H 1.08998 * 109.47629 * 154.20134 * 19 18 17 38 38 H 1.08001 * 119.99830 * 180.02562 * 20 18 17 39 39 H 1.07997 * 119.99892 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.00008 * 179.69960 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5446 1.8203 2.4376 6 6 2.6721 3.3212 2.4836 7 1 3.0495 3.8576 1.6255 8 6 2.3059 4.0096 3.6207 9 7 2.4177 5.3194 3.6610 10 14 1.6512 3.0820 5.1040 11 1 2.7809 2.7097 5.9932 12 1 0.6997 3.9461 5.8478 13 1 0.9527 1.8526 4.6502 14 16 4.5529 0.8101 0.9341 15 8 4.5762 0.0639 -0.2750 16 8 4.9583 0.2741 2.1860 17 6 5.5493 2.2367 0.6575 18 6 5.7769 2.6817 -0.6316 19 6 5.1723 1.9468 -1.8001 20 6 6.5580 3.8011 -0.8485 21 6 7.1123 4.4756 0.2236 22 6 6.8848 4.0307 1.5122 23 6 6.1034 2.9110 1.7292 24 7 5.8605 2.4341 3.1092 25 8 6.7670 1.9301 3.7478 26 8 4.7542 2.5456 3.6063 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.5029 1.5393 2.5920 33 1 3.1600 1.3792 3.2216 34 1 2.1604 5.8037 4.4611 35 1 5.8283 1.1267 -2.0923 36 1 4.1985 1.5491 -1.5148 37 1 5.0530 2.6330 -2.6386 38 1 6.7354 4.1489 -1.8555 39 1 7.7230 5.3500 0.0541 40 1 7.3217 4.5548 2.3495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292673112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = 9.255034 kcal Electronic energy + Delta-G solvation = -29985.596772 eV Core-core repulsion = 25898.289429 eV Total energy + Delta-G solvation = -4087.307343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44380 -39.41120 -37.25283 -36.63460 -35.67118 -35.58089 -33.24826 -33.18399 -31.97688 -31.90678 -28.16673 -27.35452 -26.14416 -25.09313 -23.15823 -21.91946 -21.61203 -19.91330 -19.01503 -18.26824 -17.93020 -17.42016 -17.16998 -17.09736 -16.68703 -15.94165 -15.40837 -15.12011 -14.65760 -14.18827 -14.08675 -13.91546 -13.82680 -13.18218 -12.88497 -12.82659 -12.64552 -12.52627 -12.19665 -12.07411 -11.95006 -11.60619 -11.57956 -11.42714 -11.02749 -10.75398 -10.68044 -10.60135 -10.48206 -10.27628 -10.17743 -9.86203 -9.67271 -9.53598 -9.21054 -9.13269 -8.44388 -8.26404 -6.03179 -3.98937 0.31360 0.64336 0.82238 1.42541 1.90478 2.44703 3.05412 3.33936 3.43460 3.47521 3.55803 3.90619 4.19177 4.52393 4.52790 4.56209 4.86042 4.95301 4.98374 5.09849 5.26428 5.30618 5.35196 5.40760 5.45741 5.58387 5.65227 5.86025 5.89584 5.99628 6.07764 6.19059 6.25384 6.41227 6.80927 6.83013 6.88542 7.06650 7.15062 7.30157 7.62041 8.41547 8.48382 8.92507 9.60117 11.09657 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.008137 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.155080 B = 3440.286505 C = 4871.535030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.167 4.167 3 C 0.151 3.849 4 N -0.963 5.963 5 C 0.208 3.792 6 C -0.517 4.517 7 H 0.072 0.928 8 C 0.091 3.909 9 N -0.900 5.900 10 Si 0.862 3.138 11 H -0.263 1.263 12 H -0.290 1.290 13 H -0.265 1.265 14 S 2.675 3.325 15 O -0.957 6.957 16 O -0.950 6.950 17 C -0.640 4.640 18 C 0.025 3.975 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.053 4.053 22 C -0.099 4.099 23 C 0.102 3.898 24 N -0.003 5.003 25 O -0.187 6.187 26 O -0.040 6.040 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -3.405 -11.764 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C 0.025 3.975 4 N -0.801 5.801 5 C 0.086 3.914 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.112 4.112 9 N -0.539 5.539 10 Si 0.689 3.311 11 H -0.187 1.187 12 H -0.216 1.216 13 H -0.190 1.190 14 S 2.762 3.238 15 O -0.947 6.947 16 O -0.940 6.940 17 C -0.724 4.724 18 C 0.023 3.977 19 C -0.196 4.196 20 C -0.137 4.137 21 C -0.072 4.072 22 C -0.119 4.119 23 C 0.021 3.979 24 N 0.523 4.477 25 O -0.390 6.390 26 O -0.278 6.278 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.289 -3.870 -12.295 13.932 hybrid contribution -0.175 0.573 1.235 1.373 sum 5.114 -3.297 -11.059 12.623 Atomic orbital electron populations 1.23835 0.95716 1.01867 1.00469 1.23417 0.96463 0.99040 0.99788 1.20435 0.93133 0.96133 0.87775 1.57187 1.23836 1.80390 1.18731 1.19984 0.96941 0.96393 0.78125 1.21114 1.44006 0.89148 1.01374 0.90965 1.24595 0.94484 0.94393 0.97697 1.69878 1.48590 1.06576 1.28897 0.87042 0.79635 0.80188 0.84264 1.18746 1.21622 1.18971 1.02660 0.73455 0.74060 0.73629 1.93562 1.86706 1.68258 1.46185 1.93641 1.81993 1.75908 1.42483 1.30848 1.18365 1.25521 0.97621 1.19616 0.92527 0.93490 0.92017 1.21460 1.03157 1.00262 0.94740 1.21404 0.97274 0.95014 1.00043 1.21327 0.96457 0.98392 0.91030 1.20869 0.97384 0.94317 0.99299 1.20350 0.98782 0.96515 0.82262 1.43658 1.01635 1.00151 1.02261 1.94468 1.38488 1.44966 1.61070 1.94857 1.07618 1.53896 1.71393 0.88120 0.88646 0.87447 0.88517 0.90218 0.93810 0.92426 0.92767 0.88525 0.88992 0.90331 0.83812 0.83459 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.46 9.85 -36.03 -0.35 -2.81 16 3 C 0.15 2.42 5.78 -5.20 -0.03 2.39 16 4 N -0.96 -19.02 2.75 -116.95 -0.32 -19.35 16 5 C 0.21 4.82 3.84 -5.19 -0.02 4.80 16 6 C -0.52 -13.38 7.64 -34.44 -0.26 -13.64 16 7 H 0.07 1.99 8.06 -52.48 -0.42 1.57 16 8 C 0.09 2.49 4.83 -17.82 -0.09 2.41 16 9 N -0.90 -26.09 13.96 55.43 0.77 -25.31 16 10 Si 0.86 21.25 26.94 -169.99 -4.58 16.67 16 11 H -0.26 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 S 2.68 53.07 5.00 -107.50 -0.54 52.54 16 15 O -0.96 -17.37 13.31 -57.18 -0.76 -18.13 16 16 O -0.95 -22.09 13.95 -66.02 -0.92 -23.01 16 17 C -0.64 -11.94 5.97 -39.58 -0.24 -12.18 16 18 C 0.03 0.37 5.88 -104.62 -0.61 -0.24 16 19 C -0.14 -1.71 8.37 36.00 0.30 -1.41 16 20 C -0.12 -1.42 9.68 -39.58 -0.38 -1.80 16 21 C -0.05 -0.66 10.05 -39.58 -0.40 -1.05 16 22 C -0.10 -1.61 9.97 -39.58 -0.39 -2.00 16 23 C 0.10 2.06 6.09 -79.95 -0.49 1.57 16 24 N 0.00 -0.08 2.50 33.96 0.08 0.01 16 25 O -0.19 -4.36 19.13 -31.54 -0.60 -4.96 16 26 O -0.04 -1.02 11.04 -35.26 -0.39 -1.41 16 27 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 28 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.10 1.55 7.74 -51.93 -0.40 1.14 16 31 H 0.08 1.10 5.19 -51.93 -0.27 0.84 16 32 H 0.04 0.99 7.16 -51.93 -0.37 0.62 16 33 H 0.06 1.44 4.46 -51.93 -0.23 1.20 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.10 1.11 7.95 -51.93 -0.41 0.70 16 36 H 0.09 1.23 3.38 -51.93 -0.18 1.05 16 37 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.14 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -33.22 340.02 -9.08 -42.30 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.40 Total: 1.42 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.55 Total: -25.88 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.54 Total: -44.65 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -2.67 Total: -47.52 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.58 Total: 16.67 kcal Atomic # 16 Polarization: 53.07 SS G_CDS: -0.54 Total: 52.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.22 -9.08 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292673112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.552 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds