Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99940 * 2 1 4 4 N 1.46502 * 109.47177 * 124.99788 * 3 2 1 5 5 C 1.46495 * 120.00102 * 272.19377 * 4 3 2 6 6 C 1.50704 * 109.47161 * 274.99739 * 5 4 3 7 7 H 1.08004 * 119.99529 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00258 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99962 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00051 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.47040 * 89.99827 * 10 8 6 12 12 H 1.48498 * 109.47365 * 210.00044 * 10 8 6 13 13 H 1.48502 * 109.47215 * 330.00384 * 10 8 6 14 14 S 1.65599 * 120.00016 * 92.18864 * 4 3 2 15 15 O 1.42099 * 106.40131 * 343.73279 * 14 4 3 16 16 O 1.42092 * 106.40583 * 210.81068 * 14 4 3 17 17 C 1.76200 * 107.21571 * 97.26941 * 14 4 3 18 18 C 1.38257 * 120.00065 * 268.84023 * 17 14 4 19 19 C 1.50696 * 120.00190 * 0.02562 * 18 17 14 20 20 C 1.38217 * 120.00001 * 179.97438 * 18 17 14 21 21 C 1.38258 * 119.99857 * 0.02913 * 20 18 17 22 22 C 1.38212 * 119.99989 * 359.97438 * 21 20 18 23 23 C 1.38213 * 119.99852 * 88.84667 * 17 14 4 24 24 N 1.48012 * 120.00113 * 0.03409 * 23 17 14 25 25 O 1.21805 * 119.99975 * 109.72113 * 24 23 17 26 26 O 1.21797 * 120.00649 * 289.72541 * 24 23 17 27 27 H 1.08002 * 120.00063 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00363 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99874 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47442 * 5.00225 * 3 2 1 31 31 H 1.08996 * 109.47611 * 244.99853 * 3 2 1 32 32 H 1.08997 * 109.47683 * 34.99296 * 5 4 3 33 33 H 1.08998 * 109.47328 * 155.00084 * 5 4 3 34 34 H 0.97001 * 120.00000 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46949 * 274.20051 * 19 18 17 36 36 H 1.08998 * 109.47413 * 34.19923 * 19 18 17 37 37 H 1.08998 * 109.47629 * 154.20134 * 19 18 17 38 38 H 1.08001 * 119.99830 * 180.02562 * 20 18 17 39 39 H 1.07997 * 119.99892 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.00008 * 179.69960 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5446 1.8203 2.4376 6 6 2.6721 3.3212 2.4836 7 1 3.0495 3.8576 1.6255 8 6 2.3059 4.0096 3.6207 9 7 2.4177 5.3194 3.6610 10 14 1.6512 3.0820 5.1040 11 1 2.7809 2.7097 5.9932 12 1 0.6997 3.9461 5.8478 13 1 0.9527 1.8526 4.6502 14 16 4.5529 0.8101 0.9341 15 8 4.5762 0.0639 -0.2750 16 8 4.9583 0.2741 2.1860 17 6 5.5493 2.2367 0.6575 18 6 5.7769 2.6817 -0.6316 19 6 5.1723 1.9468 -1.8001 20 6 6.5580 3.8011 -0.8485 21 6 7.1123 4.4756 0.2236 22 6 6.8848 4.0307 1.5122 23 6 6.1034 2.9110 1.7292 24 7 5.8605 2.4341 3.1092 25 8 6.7670 1.9301 3.7478 26 8 4.7542 2.5456 3.6063 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.5029 1.5393 2.5920 33 1 3.1600 1.3792 3.2216 34 1 2.1604 5.8037 4.4611 35 1 5.8283 1.1267 -2.0923 36 1 4.1985 1.5491 -1.5148 37 1 5.0530 2.6330 -2.6386 38 1 6.7354 4.1489 -1.8555 39 1 7.7230 5.3500 0.0541 40 1 7.3217 4.5548 2.3495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292673112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -12.488671 kcal Electronic energy + Delta-G solvation = -29986.539650 eV Core-core repulsion = 25898.289429 eV Total energy + Delta-G solvation = -4088.250221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.10418 -40.62476 -38.77228 -38.13509 -37.34621 -37.23407 -34.87558 -34.36147 -33.65310 -33.13448 -29.91349 -28.49501 -27.61425 -26.53766 -24.41099 -23.74417 -22.98792 -21.10739 -20.46361 -19.79592 -19.62690 -18.94643 -18.82102 -18.60104 -18.39288 -17.47094 -16.64715 -16.40772 -16.01820 -15.93022 -15.48529 -15.08772 -15.07136 -14.57656 -14.45608 -14.14532 -13.92621 -13.87400 -13.72526 -13.38429 -13.31740 -13.19148 -13.16895 -12.85350 -12.59218 -12.42066 -12.38218 -12.14562 -12.07386 -11.90374 -11.77892 -11.69803 -11.56967 -10.83920 -10.55774 -10.34240 -10.28765 -9.88584 -8.15306 -6.10161 -1.03440 -0.80524 -0.43338 -0.20320 0.39548 1.30168 1.41755 1.49616 1.53841 1.80255 2.04473 2.44111 2.48905 2.85740 3.25370 3.33815 3.56959 3.72301 3.78093 3.84951 3.87003 4.11039 4.20633 4.31802 4.41785 4.52979 4.65132 4.75773 4.84818 4.88442 4.97671 5.00614 5.07091 5.13911 5.27014 5.34027 5.49074 5.59659 5.61419 5.74082 5.91572 6.37966 6.58007 6.81667 7.50504 9.00399 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.008137 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.155080 B = 3440.286505 C = 4871.535030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.193 4.193 3 C 0.143 3.857 4 N -0.968 5.968 5 C 0.218 3.782 6 C -0.490 4.490 7 H 0.049 0.951 8 C 0.048 3.952 9 N -0.941 5.941 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.246 1.246 14 S 2.679 3.321 15 O -0.947 6.947 16 O -0.995 6.995 17 C -0.667 4.667 18 C 0.023 3.977 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.036 4.036 22 C -0.114 4.114 23 C 0.060 3.940 24 N -0.001 5.001 25 O -0.189 6.189 26 O -0.098 6.098 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -2.820 -15.238 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.213 4.213 3 C 0.019 3.981 4 N -0.806 5.806 5 C 0.094 3.906 6 C -0.529 4.529 7 H 0.067 0.933 8 C -0.151 4.151 9 N -0.582 5.582 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.169 1.169 14 S 2.769 3.231 15 O -0.937 6.937 16 O -0.986 6.986 17 C -0.754 4.754 18 C 0.021 3.979 19 C -0.202 4.202 20 C -0.117 4.117 21 C -0.054 4.054 22 C -0.133 4.133 23 C -0.021 4.021 24 N 0.521 4.479 25 O -0.398 6.398 26 O -0.326 6.326 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.219 0.781 39 H 0.218 0.782 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.655 -3.325 -15.778 17.087 hybrid contribution -0.145 0.420 2.083 2.130 sum 5.510 -2.905 -13.695 15.045 Atomic orbital electron populations 1.24094 0.95103 1.03258 0.97377 1.23343 0.97160 0.98214 1.02607 1.20705 0.93024 0.96993 0.87383 1.57106 1.24731 1.80299 1.18479 1.19629 0.96816 0.94458 0.79714 1.21145 1.41520 0.90308 0.99949 0.93305 1.25114 0.95394 0.94808 0.99745 1.69967 1.50997 1.07783 1.29491 0.86436 0.78956 0.80200 0.81990 1.20177 1.21058 1.16926 1.02225 0.73392 0.74480 0.73001 1.93566 1.86617 1.68550 1.44931 1.93582 1.82671 1.77515 1.44788 1.30623 1.19835 1.25762 0.99153 1.20173 0.92450 0.94369 0.90888 1.21621 1.02146 1.01434 0.94968 1.22118 0.94296 0.92728 1.02608 1.22011 0.95344 0.99098 0.88946 1.21324 0.96924 0.93263 1.01838 1.20597 1.02504 0.99194 0.79792 1.44187 1.00873 0.99040 1.03831 1.94398 1.38247 1.44504 1.62637 1.94832 1.08437 1.56265 1.73028 0.87467 0.86452 0.87678 0.88747 0.88054 0.93286 0.94212 0.93008 0.87676 0.90573 0.85970 0.78122 0.78208 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.19 -5.48 9.85 25.64 0.25 -5.22 16 3 C 0.14 4.51 5.78 85.63 0.49 5.00 16 4 N -0.97 -38.78 2.75 -523.93 -1.44 -40.22 16 5 C 0.22 10.37 3.84 85.64 0.33 10.69 16 6 C -0.49 -26.09 7.64 25.60 0.20 -25.90 16 7 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 8 C 0.05 2.70 4.83 84.65 0.41 3.11 16 9 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 10 Si 0.90 44.74 26.94 68.60 1.85 46.58 16 11 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 14 S 2.68 108.07 5.00 -56.49 -0.28 107.78 16 15 O -0.95 -33.90 13.31 -128.00 -1.70 -35.60 16 16 O -1.00 -48.61 13.95 -119.54 -1.67 -50.28 16 17 C -0.67 -24.60 5.97 22.27 0.13 -24.47 16 18 C 0.02 0.61 5.88 -19.87 -0.12 0.50 16 19 C -0.15 -2.99 8.37 71.23 0.60 -2.39 16 20 C -0.10 -1.83 9.68 22.27 0.22 -1.61 16 21 C -0.04 -0.72 10.05 22.27 0.22 -0.49 16 22 C -0.11 -3.55 9.97 22.27 0.22 -3.33 16 23 C 0.06 2.46 6.09 36.38 0.22 2.68 16 24 N 0.00 -0.05 2.50 -46.47 -0.12 -0.16 16 25 O -0.19 -9.30 19.13 20.87 0.40 -8.90 16 26 O -0.10 -5.31 11.04 24.43 0.27 -5.04 16 27 H 0.11 2.39 7.84 -2.91 -0.02 2.37 16 28 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.09 2.97 7.74 -2.38 -0.02 2.95 16 31 H 0.10 2.68 5.19 -2.39 -0.01 2.67 16 32 H 0.05 2.24 7.16 -2.39 -0.02 2.23 16 33 H 0.04 2.09 4.46 -2.39 -0.01 2.08 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.10 2.02 7.95 -2.39 -0.02 2.00 16 36 H 0.08 1.83 3.38 -2.39 -0.01 1.82 16 37 H 0.12 1.43 8.06 -2.39 -0.02 1.41 16 38 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -78.71 340.02 2.78 -75.93 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.03 Total: 10.02 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 4.15 Total: -44.25 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -1.26 Total: -96.24 kcal Atomic # 8 Polarization: -97.12 SS G_CDS: -2.70 Total: -99.82 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.85 Total: 46.58 kcal Atomic # 16 Polarization: 108.07 SS G_CDS: -0.28 Total: 107.78 kcal Total: -78.71 2.78 -75.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292673112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.440 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds