Wall clock time and date at job start Sat Apr 11 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00213 * 2 1 4 4 N 1.46502 * 109.47080 * 125.00091 * 3 2 1 5 5 C 1.46497 * 119.99884 * 275.00070 * 4 3 2 6 6 C 1.50704 * 109.47000 * 277.12613 * 5 4 3 7 7 H 1.07999 * 120.00393 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99775 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00075 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00343 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46783 * 89.99833 * 10 8 6 12 12 H 1.48493 * 109.47337 * 209.99774 * 10 8 6 13 13 H 1.48494 * 109.46990 * 330.00225 * 10 8 6 14 14 S 1.65598 * 119.99836 * 95.00112 * 4 3 2 15 15 O 1.42099 * 106.39968 * 151.18991 * 14 4 3 16 16 O 1.42097 * 106.40459 * 18.26983 * 14 4 3 17 17 C 1.76196 * 107.21717 * 264.72997 * 14 4 3 18 18 C 1.38261 * 120.00286 * 345.02020 * 17 14 4 19 19 C 1.38208 * 120.00106 * 179.97438 * 18 17 14 20 20 C 1.38257 * 120.00282 * 0.02562 * 19 18 17 21 21 C 1.38211 * 119.99869 * 359.95391 * 20 19 18 22 22 N 1.48016 * 120.00223 * 180.02562 * 21 20 19 23 23 O 1.21802 * 119.99855 * 353.28227 * 22 21 20 24 24 O 1.21792 * 120.00282 * 173.28156 * 22 21 20 25 25 C 1.38215 * 120.00029 * 164.93623 * 17 14 4 26 26 C 1.50697 * 119.99846 * 0.08217 * 25 17 14 27 27 H 1.08001 * 120.00057 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00574 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99573 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46848 * 5.00113 * 3 2 1 31 31 H 1.09001 * 109.47284 * 245.00075 * 3 2 1 32 32 H 1.09001 * 109.47557 * 37.12314 * 5 4 3 33 33 H 1.09000 * 109.47128 * 157.13135 * 5 4 3 34 34 H 0.96999 * 120.00549 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.99864 * 0.26082 * 18 17 14 36 36 H 1.08008 * 120.00044 * 179.97438 * 19 18 17 37 37 H 1.07994 * 120.00261 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47579 * 263.07092 * 26 25 17 39 39 H 1.09002 * 109.47066 * 23.07310 * 26 25 17 40 40 H 1.08999 * 109.47099 * 143.07114 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5498 3.2670 2.5267 7 1 2.8768 3.8453 1.6752 8 6 2.1509 3.9058 3.6816 9 7 2.1689 5.2193 3.7465 10 14 1.5846 2.9058 5.1543 11 1 2.7501 2.5991 6.0220 12 1 0.5840 3.6850 5.9266 13 1 0.9698 1.6382 4.6849 14 16 4.5713 0.8758 0.9172 15 8 5.3319 1.6007 1.8739 16 8 4.8201 0.9357 -0.4805 17 6 4.6894 -0.8226 1.3712 18 6 3.6697 -1.4187 2.0899 19 6 3.7622 -2.7510 2.4455 20 6 4.8746 -3.4877 2.0831 21 6 5.8938 -2.8920 1.3644 22 7 7.0845 -3.6808 0.9759 23 8 7.2246 -4.8170 1.3918 24 8 7.9242 -3.1937 0.2404 25 6 5.8007 -1.5595 1.0075 26 6 6.9122 -0.9098 0.2241 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.5114 1.4047 2.6134 33 1 3.1840 1.3510 3.2200 34 1 1.8886 5.6687 4.5591 35 1 2.7988 -0.8444 2.3693 36 1 2.9657 -3.2166 3.0072 37 1 4.9470 -4.5287 2.3614 38 1 6.7825 -1.1240 -0.8367 39 1 6.8866 0.1682 0.3830 40 1 7.8715 -1.3038 0.5596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:21 Heat of formation + Delta-G solvation = -11.369972 kcal Electronic energy + Delta-G solvation = -28330.957323 eV Core-core repulsion = 24242.755613 eV Total energy + Delta-G solvation = -4088.201710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.48793 -39.84809 -37.01464 -36.94000 -36.78917 -35.65182 -33.56982 -33.35713 -32.45740 -32.14155 -28.34559 -28.20050 -26.28302 -25.24372 -23.57174 -22.52114 -22.14786 -20.10126 -19.72026 -18.85907 -18.28790 -17.83572 -17.28147 -17.23984 -16.65786 -16.34016 -16.11816 -15.81544 -15.01150 -14.38351 -14.31715 -14.19535 -13.98721 -13.42553 -13.24989 -12.96797 -12.78367 -12.68380 -12.56730 -12.31185 -12.09305 -11.80478 -11.78469 -11.63301 -11.54894 -11.35202 -11.20951 -11.05999 -10.89331 -10.79852 -10.56312 -10.40943 -10.18052 -9.72133 -9.64274 -9.39292 -8.73308 -8.48588 -6.21456 -4.22423 -0.44621 0.24495 0.50949 1.02217 1.14877 2.25498 2.69374 3.12762 3.16189 3.18916 3.25660 3.75576 3.89395 4.09682 4.24216 4.26408 4.44088 4.59020 4.81428 4.88331 4.93112 4.99627 5.07620 5.16822 5.26327 5.32570 5.36787 5.45617 5.51742 5.76014 5.80354 5.87578 5.98764 6.15414 6.26931 6.44112 6.60486 6.66872 6.82943 7.07932 7.39151 7.44577 8.33185 8.83297 9.36022 10.91719 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.004095 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.333048 B = 6836.334728 C = 6936.651191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.180 4.180 3 C 0.143 3.857 4 N -0.970 5.970 5 C 0.220 3.780 6 C -0.534 4.534 7 H 0.082 0.918 8 C 0.077 3.923 9 N -0.889 5.889 10 Si 0.866 3.134 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 S 2.685 3.315 15 O -0.925 6.925 16 O -0.956 6.956 17 C -0.678 4.678 18 C 0.024 3.976 19 C -0.142 4.142 20 C -0.009 4.009 21 C -0.070 4.070 22 N 0.035 4.965 23 O -0.167 6.167 24 O -0.153 6.153 25 C 0.085 3.915 26 C -0.157 4.157 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -16.839 -4.818 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C 0.018 3.982 4 N -0.809 5.809 5 C 0.097 3.903 6 C -0.573 4.573 7 H 0.100 0.900 8 C -0.127 4.127 9 N -0.527 5.527 10 Si 0.693 3.307 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.189 1.189 14 S 2.769 3.231 15 O -0.915 6.915 16 O -0.946 6.946 17 C -0.759 4.759 18 C 0.006 3.994 19 C -0.161 4.161 20 C -0.028 4.028 21 C -0.154 4.154 22 N 0.552 4.448 23 O -0.380 6.380 24 O -0.369 6.369 25 C 0.082 3.918 26 C -0.213 4.213 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.133 0.867 39 H 0.090 0.910 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.241 -15.839 -4.764 16.542 hybrid contribution -0.387 -1.424 1.221 1.915 sum -0.628 -17.263 -3.544 17.634 Atomic orbital electron populations 1.23872 0.95723 1.02027 0.99527 1.23474 0.96731 0.98934 1.00864 1.20495 0.93284 0.95747 0.88713 1.57208 1.27429 1.78237 1.18044 1.19628 0.95754 0.97512 0.77384 1.21264 1.45392 0.88949 1.01727 0.90011 1.24842 0.94912 0.94790 0.98117 1.69874 1.47051 1.07574 1.28205 0.87014 0.79304 0.80710 0.83699 1.19701 1.20714 1.18905 1.02726 0.73453 0.72889 0.74054 1.93683 1.68021 1.67184 1.62567 1.93563 1.84121 1.86121 1.30825 1.31803 1.01058 1.29304 1.13707 1.21557 0.95800 0.95015 0.87053 1.21345 0.98376 0.94175 1.02208 1.21267 0.90201 1.01556 0.89807 1.20976 0.90319 0.92832 1.11307 1.43451 1.01581 1.00863 0.98880 1.94529 1.82831 1.03122 1.57551 1.94493 1.37494 1.72705 1.32172 1.19347 0.93517 0.90197 0.88693 1.21719 0.97203 1.00645 1.01750 0.87824 0.88753 0.88129 0.87983 0.88680 0.94166 0.95288 0.92318 0.82432 0.82626 0.82344 0.86716 0.91027 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 14.32 29.01 0.42 -1.44 16 2 C -0.18 -2.16 9.84 -36.03 -0.35 -2.52 16 3 C 0.14 2.13 6.09 -5.19 -0.03 2.09 16 4 N -0.97 -17.19 1.99 -116.95 -0.23 -17.43 16 5 C 0.22 4.55 3.19 -5.19 -0.02 4.53 16 6 C -0.53 -13.96 9.92 -34.44 -0.34 -14.30 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 10 Si 0.87 19.48 27.47 -169.99 -4.67 14.81 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 14 S 2.68 48.03 4.19 -107.50 -0.45 47.58 16 15 O -0.92 -20.23 16.99 -57.17 -0.97 -21.21 16 16 O -0.96 -17.34 15.05 -57.17 -0.86 -18.20 16 17 C -0.68 -9.85 5.83 -39.58 -0.23 -10.08 16 18 C 0.02 0.29 9.18 -39.58 -0.36 -0.07 16 19 C -0.14 -1.31 10.05 -39.59 -0.40 -1.71 16 20 C -0.01 -0.09 9.56 -39.58 -0.38 -0.47 16 21 C -0.07 -0.90 6.83 -79.95 -0.55 -1.45 16 22 N 0.04 0.48 4.45 33.96 0.15 0.63 16 23 O -0.17 -2.28 18.47 -29.46 -0.54 -2.82 16 24 O -0.15 -2.16 15.37 -29.46 -0.45 -2.61 16 25 C 0.09 1.20 5.88 -104.62 -0.61 0.59 16 26 C -0.16 -2.14 7.70 36.00 0.28 -1.86 16 27 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 28 H 0.09 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.10 1.08 7.67 -52.49 -0.40 0.68 16 30 H 0.10 1.56 7.76 -51.93 -0.40 1.16 16 31 H 0.10 1.35 6.88 -51.93 -0.36 1.00 16 32 H 0.04 0.77 7.18 -51.93 -0.37 0.40 16 33 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.16 1.74 6.45 -52.49 -0.34 1.40 16 36 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.16 1.18 7.63 -52.49 -0.40 0.78 16 38 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.03 5.97 -51.93 -0.31 0.72 16 40 H 0.11 1.42 5.88 -51.93 -0.31 1.12 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -32.36 353.53 -9.14 -41.50 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.53 Total: 2.25 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -2.68 Total: -24.70 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.69 Total: -41.92 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.83 Total: -44.84 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.67 Total: 14.81 kcal Atomic # 16 Polarization: 48.03 SS G_CDS: -0.45 Total: 47.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.36 -9.14 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.126 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds