Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00213 * 2 1 4 4 N 1.46502 * 109.47080 * 125.00091 * 3 2 1 5 5 C 1.46497 * 119.99884 * 275.00070 * 4 3 2 6 6 C 1.50704 * 109.47000 * 277.12613 * 5 4 3 7 7 H 1.07999 * 120.00393 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99775 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00075 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00343 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46783 * 89.99833 * 10 8 6 12 12 H 1.48493 * 109.47337 * 209.99774 * 10 8 6 13 13 H 1.48494 * 109.46990 * 330.00225 * 10 8 6 14 14 S 1.65598 * 119.99836 * 95.00112 * 4 3 2 15 15 O 1.42099 * 106.39968 * 151.18991 * 14 4 3 16 16 O 1.42097 * 106.40459 * 18.26983 * 14 4 3 17 17 C 1.76196 * 107.21717 * 264.72997 * 14 4 3 18 18 C 1.38261 * 120.00286 * 345.02020 * 17 14 4 19 19 C 1.38208 * 120.00106 * 179.97438 * 18 17 14 20 20 C 1.38257 * 120.00282 * 0.02562 * 19 18 17 21 21 C 1.38211 * 119.99869 * 359.95391 * 20 19 18 22 22 N 1.48016 * 120.00223 * 180.02562 * 21 20 19 23 23 O 1.21802 * 119.99855 * 353.28227 * 22 21 20 24 24 O 1.21792 * 120.00282 * 173.28156 * 22 21 20 25 25 C 1.38215 * 120.00029 * 164.93623 * 17 14 4 26 26 C 1.50697 * 119.99846 * 0.08217 * 25 17 14 27 27 H 1.08001 * 120.00057 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00574 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99573 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46848 * 5.00113 * 3 2 1 31 31 H 1.09001 * 109.47284 * 245.00075 * 3 2 1 32 32 H 1.09001 * 109.47557 * 37.12314 * 5 4 3 33 33 H 1.09000 * 109.47128 * 157.13135 * 5 4 3 34 34 H 0.96999 * 120.00549 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.99864 * 0.26082 * 18 17 14 36 36 H 1.08008 * 120.00044 * 179.97438 * 19 18 17 37 37 H 1.07994 * 120.00261 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47579 * 263.07092 * 26 25 17 39 39 H 1.09002 * 109.47066 * 23.07310 * 26 25 17 40 40 H 1.08999 * 109.47099 * 143.07114 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7620 2.4523 6 6 2.5498 3.2670 2.5267 7 1 2.8768 3.8453 1.6752 8 6 2.1509 3.9058 3.6816 9 7 2.1689 5.2193 3.7465 10 14 1.5846 2.9058 5.1543 11 1 2.7501 2.5991 6.0220 12 1 0.5840 3.6850 5.9266 13 1 0.9698 1.6382 4.6849 14 16 4.5713 0.8758 0.9172 15 8 5.3319 1.6007 1.8739 16 8 4.8201 0.9357 -0.4805 17 6 4.6894 -0.8226 1.3712 18 6 3.6697 -1.4187 2.0899 19 6 3.7622 -2.7510 2.4455 20 6 4.8746 -3.4877 2.0831 21 6 5.8938 -2.8920 1.3644 22 7 7.0845 -3.6808 0.9759 23 8 7.2246 -4.8170 1.3918 24 8 7.9242 -3.1937 0.2404 25 6 5.8007 -1.5595 1.0075 26 6 6.9122 -0.9098 0.2241 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.5114 1.4047 2.6134 33 1 3.1840 1.3510 3.2200 34 1 1.8886 5.6687 4.5591 35 1 2.7988 -0.8444 2.3693 36 1 2.9657 -3.2166 3.0072 37 1 4.9470 -4.5287 2.3614 38 1 6.7825 -1.1240 -0.8367 39 1 6.8866 0.1682 0.3830 40 1 7.8715 -1.3038 0.5596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -32.428212 kcal Electronic energy + Delta-G solvation = -28331.870477 eV Core-core repulsion = 24242.755613 eV Total energy + Delta-G solvation = -4089.114864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.49128 -40.78407 -38.46525 -38.20295 -37.91058 -37.14285 -34.96423 -34.48447 -33.69526 -33.38309 -29.97556 -29.22559 -27.26231 -26.60234 -24.59368 -23.89697 -23.45050 -21.10201 -20.72493 -19.85714 -19.64445 -19.05852 -18.84906 -18.55078 -17.93299 -17.56584 -17.26782 -16.85140 -16.36114 -15.93920 -15.47097 -15.24653 -15.02069 -14.63919 -14.57621 -14.22395 -13.94405 -13.79256 -13.69014 -13.57026 -13.54561 -13.30881 -13.29060 -13.08877 -12.66801 -12.49768 -12.41426 -12.38238 -12.22768 -12.07548 -11.88841 -11.82658 -11.68397 -11.15806 -10.77068 -10.52438 -10.31523 -9.97009 -8.26850 -6.33639 -1.40257 -0.87888 -0.69411 0.06358 0.17371 1.31610 1.38294 1.43053 1.50490 1.78888 1.92442 2.36994 2.47076 2.96394 3.07180 3.17420 3.30088 3.42002 3.63363 3.66996 3.85596 4.03370 4.03828 4.12280 4.25033 4.35851 4.46627 4.54456 4.63856 4.67282 4.71762 4.78288 4.96241 5.00951 5.10209 5.22968 5.30137 5.46505 5.54241 5.73762 5.94814 6.29742 6.40212 6.70737 7.29195 8.90480 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.004095 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.333048 B = 6836.334728 C = 6936.651191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.192 4.192 3 C 0.136 3.864 4 N -0.973 5.973 5 C 0.227 3.773 6 C -0.542 4.542 7 H 0.030 0.970 8 C 0.008 3.992 9 N -0.949 5.949 10 Si 0.934 3.066 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.214 1.214 14 S 2.690 3.310 15 O -0.981 6.981 16 O -0.974 6.974 17 C -0.686 4.686 18 C 0.021 3.979 19 C -0.118 4.118 20 C 0.005 3.995 21 C -0.081 4.081 22 N 0.034 4.966 23 O -0.153 6.153 24 O -0.183 6.183 25 C 0.068 3.932 26 C -0.163 4.163 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.171 0.829 36 H 0.208 0.792 37 H 0.194 0.806 38 H 0.121 0.879 39 H 0.052 0.948 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -21.745 -3.178 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.212 4.212 3 C 0.012 3.988 4 N -0.812 5.812 5 C 0.103 3.897 6 C -0.582 4.582 7 H 0.048 0.952 8 C -0.190 4.190 9 N -0.589 5.589 10 Si 0.756 3.244 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.135 1.135 14 S 2.780 3.220 15 O -0.971 6.971 16 O -0.964 6.964 17 C -0.772 4.772 18 C 0.002 3.998 19 C -0.136 4.136 20 C -0.013 4.013 21 C -0.165 4.165 22 N 0.550 4.450 23 O -0.372 6.372 24 O -0.392 6.392 25 C 0.065 3.935 26 C -0.219 4.219 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.188 0.812 36 H 0.225 0.775 37 H 0.211 0.789 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.685 -20.670 -3.222 21.091 hybrid contribution 0.384 0.057 0.623 0.734 sum -2.301 -20.613 -2.599 20.904 Atomic orbital electron populations 1.24104 0.95193 1.03219 0.96786 1.23283 0.97038 0.97637 1.03242 1.20628 0.92859 0.97657 0.87652 1.57037 1.27439 1.78963 1.17798 1.19447 0.97544 0.93627 0.79039 1.21630 1.44273 0.92116 1.00142 0.95154 1.25920 0.95141 0.95925 1.01968 1.70070 1.49296 1.10136 1.29356 0.85929 0.78880 0.80888 0.78745 1.19740 1.20870 1.13544 1.01967 0.72915 0.73967 0.73121 1.93612 1.69538 1.70133 1.63793 1.93526 1.84254 1.87076 1.31537 1.30993 1.03023 1.26618 1.16613 1.21872 0.95111 0.96587 0.86217 1.21883 0.98793 0.92481 1.00458 1.21818 0.88916 1.03098 0.87514 1.21129 0.90764 0.92316 1.12318 1.43608 1.01823 1.00895 0.98707 1.94501 1.82684 1.03149 1.56819 1.94507 1.38313 1.72978 1.33363 1.19323 0.93421 0.91206 0.89505 1.21762 0.98083 0.99561 1.02503 0.88351 0.85779 0.86280 0.89310 0.89120 0.91049 0.94326 0.92421 0.81193 0.77526 0.78935 0.86129 0.92884 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 14.32 67.78 0.97 -1.77 16 2 C -0.19 -4.09 9.84 25.65 0.25 -3.83 16 3 C 0.14 4.06 6.09 85.63 0.52 4.58 16 4 N -0.97 -34.55 1.99 -523.90 -1.04 -35.59 16 5 C 0.23 9.16 3.19 85.63 0.27 9.43 16 6 C -0.54 -29.35 9.92 25.60 0.25 -29.09 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.01 0.46 5.47 84.65 0.46 0.93 16 9 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 10 Si 0.93 39.03 27.47 68.60 1.88 40.91 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.21 -7.14 6.54 99.48 0.65 -6.49 16 14 S 2.69 99.13 4.19 -56.49 -0.24 98.90 16 15 O -0.98 -45.35 16.99 -128.00 -2.17 -47.53 16 16 O -0.97 -37.20 15.05 -128.00 -1.93 -39.13 16 17 C -0.69 -18.95 5.83 22.27 0.13 -18.82 16 18 C 0.02 0.41 9.18 22.27 0.20 0.61 16 19 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 20 C 0.01 0.08 9.56 22.27 0.21 0.29 16 21 C -0.08 -1.86 6.83 36.37 0.25 -1.61 16 22 N 0.03 0.88 4.45 -46.47 -0.21 0.67 16 23 O -0.15 -3.74 18.47 18.88 0.35 -3.39 16 24 O -0.18 -5.09 15.37 18.90 0.29 -4.80 16 25 C 0.07 1.86 5.88 -19.87 -0.12 1.75 16 26 C -0.16 -4.62 7.70 71.24 0.55 -4.07 16 27 H 0.10 1.84 7.84 -2.91 -0.02 1.82 16 28 H 0.12 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.12 2.10 7.67 -2.91 -0.02 2.08 16 30 H 0.09 2.81 7.76 -2.39 -0.02 2.79 16 31 H 0.09 2.70 6.88 -2.39 -0.02 2.68 16 32 H 0.07 2.46 7.18 -2.39 -0.02 2.45 16 33 H 0.04 1.51 7.11 -2.39 -0.02 1.49 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.17 2.91 6.45 -2.91 -0.02 2.89 16 36 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.19 1.56 7.63 -2.91 -0.02 1.54 16 38 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.05 1.66 5.97 -2.39 -0.01 1.64 16 40 H 0.12 3.16 5.88 -2.39 -0.01 3.15 16 Total: -1.00 -77.16 353.53 2.44 -74.72 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.02 Total: 15.59 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 4.19 Total: -42.81 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -0.95 Total: -92.46 kcal Atomic # 8 Polarization: -91.39 SS G_CDS: -3.46 Total: -94.85 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.88 Total: 40.91 kcal Atomic # 16 Polarization: 99.13 SS G_CDS: -0.24 Total: 98.90 kcal Total: -77.16 2.44 -74.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.289 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds