Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00549 * 2 1 4 4 N 1.46491 * 109.47300 * 128.11655 * 3 2 1 5 5 C 1.46503 * 119.99945 * 63.26988 * 4 3 2 6 6 C 1.50704 * 109.47108 * 84.99883 * 5 4 3 7 7 H 1.07998 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99777 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00091 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47144 * 89.99664 * 10 8 6 12 12 H 1.48496 * 109.47135 * 210.00025 * 10 8 6 13 13 H 1.48501 * 109.47048 * 329.99684 * 10 8 6 14 14 S 1.65607 * 120.00109 * 243.26594 * 4 3 2 15 15 O 1.42094 * 106.39978 * 223.32694 * 14 4 3 16 16 O 1.42093 * 106.40100 * 356.25074 * 14 4 3 17 17 C 1.76202 * 107.21336 * 109.78826 * 14 4 3 18 18 C 1.38264 * 119.99818 * 113.31059 * 17 14 4 19 19 C 1.38213 * 119.99733 * 179.76042 * 18 17 14 20 20 C 1.38255 * 120.00049 * 0.48656 * 19 18 17 21 21 N 1.48017 * 119.99657 * 179.76539 * 20 19 18 22 22 O 1.21805 * 120.00025 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00333 * 0.02562 * 21 20 19 24 24 C 1.38204 * 119.99963 * 359.79183 * 20 19 18 25 25 C 1.38208 * 120.00258 * 293.57661 * 17 14 4 26 26 C 1.50695 * 119.99864 * 0.02562 * 25 17 14 27 27 H 1.08000 * 120.00226 * 184.97792 * 1 2 3 28 28 H 1.08008 * 120.00205 * 4.98016 * 1 2 3 29 29 H 1.08005 * 119.99912 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46425 * 8.11696 * 3 2 1 31 31 H 1.08991 * 109.47168 * 248.12296 * 3 2 1 32 32 H 1.09002 * 109.46968 * 204.99534 * 5 4 3 33 33 H 1.08998 * 109.46880 * 324.99791 * 5 4 3 34 34 H 0.96996 * 119.99789 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.99771 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.99650 * 180.25433 * 19 18 17 37 37 H 1.08000 * 119.99872 * 179.97438 * 24 20 19 38 38 H 1.09002 * 109.47510 * 98.11693 * 26 25 17 39 39 H 1.08996 * 109.47359 * 218.11241 * 26 25 17 40 40 H 1.08997 * 109.47420 * 338.11476 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0460 1.3016 1.0866 5 6 4.1420 0.3294 1.0801 6 6 5.2798 0.8607 0.2470 7 1 5.1950 1.8257 -0.2303 8 6 6.4292 0.1146 0.0941 9 7 7.4220 0.5780 -0.6333 10 14 6.5757 -1.5549 0.9191 11 1 6.0679 -2.6066 0.0019 12 1 8.0000 -1.8246 1.2413 13 1 5.7756 -1.5607 2.1701 14 16 2.9179 2.3968 2.3223 15 8 4.2308 2.8832 2.5649 16 8 1.8234 3.2425 1.9969 17 6 2.4441 1.5024 3.7646 18 6 3.3185 1.3960 4.8304 19 6 2.9449 0.6987 5.9637 20 6 1.7008 0.0991 6.0277 21 7 1.3028 -0.6520 7.2395 22 8 0.2069 -1.1807 7.2957 23 8 2.0711 -0.7415 8.1803 24 6 0.8290 0.2006 4.9601 25 6 1.2006 0.9027 3.8285 26 6 0.2501 1.0131 2.6643 27 1 -0.5400 -0.9318 0.0812 28 1 -0.5401 0.9318 -0.0812 29 1 1.8499 -0.9354 0.0004 30 1 1.3641 2.1284 0.1451 31 1 2.5768 1.4282 -0.9536 32 1 4.4860 0.1629 2.1010 33 1 3.7903 -0.6116 0.6572 34 1 8.2305 0.0530 -0.7412 35 1 4.2917 1.8614 4.7789 36 1 3.6263 0.6191 6.7978 37 1 -0.1427 -0.2681 5.0100 38 1 0.3128 0.1101 2.0570 39 1 -0.7677 1.1308 3.0361 40 1 0.5176 1.8782 2.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292831402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -8.796694 kcal Electronic energy + Delta-G solvation = -28383.015950 eV Core-core repulsion = 24294.925826 eV Total energy + Delta-G solvation = -4088.090125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45317 -39.86461 -37.45247 -36.83092 -36.80537 -35.65953 -33.78084 -33.28192 -32.28079 -32.18980 -28.29021 -27.56456 -27.07261 -25.30609 -23.23507 -22.36082 -22.29436 -19.79421 -19.27740 -18.97619 -18.78815 -17.80949 -17.76397 -17.43526 -16.89789 -16.41670 -15.49752 -15.03915 -15.02343 -14.55806 -14.36604 -14.07092 -14.00819 -13.78540 -13.41191 -13.00543 -12.82828 -12.61383 -12.44312 -12.07894 -11.96857 -11.80509 -11.75884 -11.63639 -11.54574 -11.42427 -11.38378 -11.38196 -10.90161 -10.79327 -10.66402 -10.38235 -10.19248 -9.69557 -9.58515 -9.08120 -8.73824 -8.42043 -6.21666 -4.22044 -0.66233 0.46691 0.61369 0.91116 1.08086 2.19914 2.71164 3.12738 3.18591 3.20060 3.28311 3.80470 3.93209 4.11947 4.23623 4.29989 4.50898 4.78308 4.81906 4.93092 5.00058 5.09265 5.19724 5.25175 5.28550 5.37169 5.39427 5.41997 5.62428 5.68663 5.88579 5.97076 6.03227 6.06046 6.19026 6.42540 6.60735 6.69169 6.82335 7.04223 7.37064 7.38795 8.33477 8.85255 9.36053 10.91596 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.004843 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.825729 B = 5780.563335 C = 6748.101315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.139 3.861 4 N -0.968 5.968 5 C 0.225 3.775 6 C -0.532 4.532 7 H 0.083 0.917 8 C 0.077 3.923 9 N -0.889 5.889 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.267 1.267 14 S 2.684 3.316 15 O -0.924 6.924 16 O -0.961 6.961 17 C -0.638 4.638 18 C -0.012 4.012 19 C -0.088 4.088 20 C 0.005 3.995 21 N 0.023 4.977 22 O -0.154 6.154 23 O -0.152 6.152 24 C -0.085 4.085 25 C 0.029 3.971 26 C -0.187 4.187 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.507 -1.100 7.231 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C 0.014 3.986 4 N -0.807 5.807 5 C 0.102 3.898 6 C -0.571 4.571 7 H 0.101 0.899 8 C -0.127 4.127 9 N -0.527 5.527 10 Si 0.693 3.307 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.192 1.192 14 S 2.770 3.230 15 O -0.914 6.914 16 O -0.951 6.951 17 C -0.720 4.720 18 C -0.032 4.032 19 C -0.108 4.108 20 C -0.078 4.078 21 N 0.545 4.455 22 O -0.371 6.371 23 O -0.369 6.369 24 C -0.105 4.105 25 C 0.027 3.973 26 C -0.242 4.242 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.965 0.101 6.571 15.434 hybrid contribution 0.046 -1.992 1.291 2.374 sum -13.919 -1.891 7.862 16.097 Atomic orbital electron populations 1.23871 0.95808 1.02193 1.01659 1.23473 0.95941 1.00101 0.98246 1.20512 0.90494 0.95419 0.92152 1.57151 1.36405 1.53392 1.33746 1.19535 0.84418 0.88179 0.97692 1.21295 0.98146 1.06549 1.31091 0.89858 1.24834 0.95490 0.97619 0.94714 1.69871 1.05843 1.38079 1.38874 0.87028 0.78225 0.85048 0.80444 1.19889 1.20655 1.19183 1.02572 0.73832 0.73633 0.72925 1.93648 1.36512 1.76546 1.84722 1.93473 1.54787 1.63557 1.83298 1.31935 1.02276 1.15993 1.21817 1.21155 0.99352 0.92986 0.89673 1.21164 0.93999 0.95473 1.00162 1.21372 0.97850 1.01432 0.87118 1.43685 1.00333 0.99344 1.02177 1.94540 1.08444 1.46568 1.87567 1.94551 1.49317 1.64679 1.28358 1.21017 1.00312 0.98224 0.90958 1.19626 0.92654 0.90274 0.94698 1.22272 0.98806 1.07181 0.95986 0.88335 0.88081 0.86591 0.88648 0.88566 0.95497 0.94639 0.92346 0.81273 0.82092 0.82320 0.87168 0.89289 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 11.09 29.02 0.32 -1.48 16 2 C -0.16 -1.85 7.93 -36.02 -0.29 -2.14 16 3 C 0.14 1.97 5.50 -5.20 -0.03 1.95 16 4 N -0.97 -16.69 2.80 -116.95 -0.33 -17.02 16 5 C 0.22 4.62 4.17 -5.19 -0.02 4.60 16 6 C -0.53 -13.73 9.94 -34.44 -0.34 -14.08 16 7 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 8 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 9 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 10 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 14 S 2.68 45.45 4.82 -107.50 -0.52 44.93 16 15 O -0.92 -19.03 16.62 -57.17 -0.95 -19.98 16 16 O -0.96 -16.00 13.72 -57.17 -0.78 -16.79 16 17 C -0.64 -9.13 5.91 -39.58 -0.23 -9.36 16 18 C -0.01 -0.16 9.55 -39.58 -0.38 -0.54 16 19 C -0.09 -1.07 9.56 -39.58 -0.38 -1.45 16 20 C 0.00 0.06 6.85 -79.95 -0.55 -0.49 16 21 N 0.02 0.32 4.45 33.96 0.15 0.47 16 22 O -0.15 -2.14 18.45 -29.46 -0.54 -2.68 16 23 O -0.15 -2.14 18.45 -29.46 -0.54 -2.69 16 24 C -0.09 -1.00 9.24 -39.59 -0.37 -1.36 16 25 C 0.03 0.36 5.87 -104.63 -0.61 -0.25 16 26 C -0.19 -1.95 7.77 36.00 0.28 -1.67 16 27 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.10 0.82 7.88 -52.48 -0.41 0.41 16 29 H 0.12 1.43 7.13 -52.48 -0.37 1.05 16 30 H 0.10 1.20 5.65 -51.93 -0.29 0.90 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.03 0.56 7.05 -51.93 -0.37 0.19 16 33 H 0.04 0.68 6.26 -51.93 -0.33 0.36 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.17 2.10 7.33 -52.49 -0.38 1.71 16 36 H 0.16 1.61 7.61 -52.49 -0.40 1.21 16 37 H 0.16 1.49 7.61 -52.49 -0.40 1.09 16 38 H 0.11 1.04 4.43 -51.93 -0.23 0.81 16 39 H 0.09 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.11 1.29 3.30 -51.93 -0.17 1.12 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -31.43 345.29 -9.12 -40.55 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.21 Total: 2.34 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.69 Total: -24.30 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.60 Total: -41.55 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.82 Total: -42.14 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Atomic # 16 Polarization: 45.45 SS G_CDS: -0.52 Total: 44.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.43 -9.12 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292831402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.749 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds