Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00549 * 2 1 4 4 N 1.46491 * 109.47300 * 128.11655 * 3 2 1 5 5 C 1.46503 * 119.99945 * 63.26988 * 4 3 2 6 6 C 1.50704 * 109.47108 * 84.99883 * 5 4 3 7 7 H 1.07998 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99770 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99777 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00091 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47144 * 89.99664 * 10 8 6 12 12 H 1.48496 * 109.47135 * 210.00025 * 10 8 6 13 13 H 1.48501 * 109.47048 * 329.99684 * 10 8 6 14 14 S 1.65607 * 120.00109 * 243.26594 * 4 3 2 15 15 O 1.42094 * 106.39978 * 223.32694 * 14 4 3 16 16 O 1.42093 * 106.40100 * 356.25074 * 14 4 3 17 17 C 1.76202 * 107.21336 * 109.78826 * 14 4 3 18 18 C 1.38264 * 119.99818 * 113.31059 * 17 14 4 19 19 C 1.38213 * 119.99733 * 179.76042 * 18 17 14 20 20 C 1.38255 * 120.00049 * 0.48656 * 19 18 17 21 21 N 1.48017 * 119.99657 * 179.76539 * 20 19 18 22 22 O 1.21805 * 120.00025 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00333 * 0.02562 * 21 20 19 24 24 C 1.38204 * 119.99963 * 359.79183 * 20 19 18 25 25 C 1.38208 * 120.00258 * 293.57661 * 17 14 4 26 26 C 1.50695 * 119.99864 * 0.02562 * 25 17 14 27 27 H 1.08000 * 120.00226 * 184.97792 * 1 2 3 28 28 H 1.08008 * 120.00205 * 4.98016 * 1 2 3 29 29 H 1.08005 * 119.99912 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46425 * 8.11696 * 3 2 1 31 31 H 1.08991 * 109.47168 * 248.12296 * 3 2 1 32 32 H 1.09002 * 109.46968 * 204.99534 * 5 4 3 33 33 H 1.08998 * 109.46880 * 324.99791 * 5 4 3 34 34 H 0.96996 * 119.99789 * 180.02562 * 9 8 6 35 35 H 1.08000 * 119.99771 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.99650 * 180.25433 * 19 18 17 37 37 H 1.08000 * 119.99872 * 179.97438 * 24 20 19 38 38 H 1.09002 * 109.47510 * 98.11693 * 26 25 17 39 39 H 1.08996 * 109.47359 * 218.11241 * 26 25 17 40 40 H 1.08997 * 109.47420 * 338.11476 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0460 1.3016 1.0866 5 6 4.1420 0.3294 1.0801 6 6 5.2798 0.8607 0.2470 7 1 5.1950 1.8257 -0.2303 8 6 6.4292 0.1146 0.0941 9 7 7.4220 0.5780 -0.6333 10 14 6.5757 -1.5549 0.9191 11 1 6.0679 -2.6066 0.0019 12 1 8.0000 -1.8246 1.2413 13 1 5.7756 -1.5607 2.1701 14 16 2.9179 2.3968 2.3223 15 8 4.2308 2.8832 2.5649 16 8 1.8234 3.2425 1.9969 17 6 2.4441 1.5024 3.7646 18 6 3.3185 1.3960 4.8304 19 6 2.9449 0.6987 5.9637 20 6 1.7008 0.0991 6.0277 21 7 1.3028 -0.6520 7.2395 22 8 0.2069 -1.1807 7.2957 23 8 2.0711 -0.7415 8.1803 24 6 0.8290 0.2006 4.9601 25 6 1.2006 0.9027 3.8285 26 6 0.2501 1.0131 2.6643 27 1 -0.5400 -0.9318 0.0812 28 1 -0.5401 0.9318 -0.0812 29 1 1.8499 -0.9354 0.0004 30 1 1.3641 2.1284 0.1451 31 1 2.5768 1.4282 -0.9536 32 1 4.4860 0.1629 2.1010 33 1 3.7903 -0.6116 0.6572 34 1 8.2305 0.0530 -0.7412 35 1 4.2917 1.8614 4.7789 36 1 3.6263 0.6191 6.7978 37 1 -0.1427 -0.2681 5.0100 38 1 0.3128 0.1101 2.0570 39 1 -0.7677 1.1308 3.0361 40 1 0.5176 1.8782 2.0576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292831402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -28.815590 kcal Electronic energy + Delta-G solvation = -28383.884035 eV Core-core repulsion = 24294.925826 eV Total energy + Delta-G solvation = -4088.958209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47676 -40.84733 -38.75271 -38.13380 -37.87262 -37.08296 -35.10000 -34.45634 -33.74176 -33.25319 -29.94769 -28.43532 -28.11744 -26.57807 -24.29958 -23.99997 -23.26947 -20.80998 -20.33249 -20.06409 -19.86073 -19.14209 -18.95345 -18.81968 -18.49780 -17.62722 -16.78092 -16.28660 -16.00079 -15.85145 -15.63487 -15.24794 -15.12077 -14.72771 -14.54222 -14.44243 -14.19085 -13.75529 -13.64249 -13.44543 -13.24389 -12.99306 -12.94087 -12.83349 -12.81150 -12.69848 -12.61785 -12.43894 -12.39901 -12.03691 -11.97683 -11.82030 -11.70521 -11.23825 -10.77785 -10.49717 -9.98639 -9.80791 -8.27652 -6.32529 -1.69898 -0.83838 -0.32416 -0.14199 0.06883 1.32404 1.35026 1.37889 1.45311 1.69854 2.01919 2.32983 2.52863 2.96719 3.05583 3.17896 3.24432 3.55649 3.71262 3.88857 3.90486 4.07359 4.20386 4.31158 4.31870 4.36791 4.50508 4.63847 4.72207 4.73506 4.77227 4.92182 4.94745 5.07724 5.11006 5.26902 5.31383 5.46097 5.57057 5.81312 5.95779 6.30446 6.31141 6.72925 7.29495 8.89800 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.004843 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.825729 B = 5780.563335 C = 6748.101315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.185 4.185 3 C 0.134 3.866 4 N -0.973 5.973 5 C 0.232 3.768 6 C -0.534 4.534 7 H 0.036 0.964 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.932 3.068 11 H -0.257 1.257 12 H -0.287 1.287 13 H -0.240 1.240 14 S 2.691 3.309 15 O -0.975 6.975 16 O -0.964 6.964 17 C -0.647 4.647 18 C -0.023 4.023 19 C -0.085 4.085 20 C -0.001 4.001 21 N 0.024 4.976 22 O -0.148 6.148 23 O -0.169 6.169 24 C -0.075 4.075 25 C 0.034 3.966 26 C -0.192 4.192 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.781 -3.444 8.704 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.010 3.990 4 N -0.811 5.811 5 C 0.107 3.893 6 C -0.573 4.573 7 H 0.054 0.946 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.755 3.245 11 H -0.181 1.181 12 H -0.212 1.212 13 H -0.164 1.164 14 S 2.782 3.218 15 O -0.965 6.965 16 O -0.954 6.954 17 C -0.733 4.733 18 C -0.043 4.043 19 C -0.105 4.105 20 C -0.084 4.084 21 N 0.544 4.456 22 O -0.368 6.368 23 O -0.382 6.382 24 C -0.094 4.094 25 C 0.031 3.969 26 C -0.247 4.247 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.197 0.803 37 H 0.205 0.795 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.240 -2.204 8.021 19.142 hybrid contribution 0.898 -1.153 0.812 1.672 sum -16.342 -3.357 8.833 18.877 Atomic orbital electron populations 1.24166 0.94705 1.03988 0.97116 1.23179 0.96735 0.98185 1.02379 1.20672 0.90159 0.97933 0.90266 1.57028 1.36413 1.52483 1.35217 1.19287 0.83743 0.89406 0.96821 1.21620 1.00167 1.04677 1.30847 0.94615 1.25797 0.95019 1.02242 0.95488 1.70053 1.06827 1.40274 1.41451 0.85954 0.78254 0.79740 0.80594 1.18103 1.21247 1.16355 1.01908 0.72867 0.73644 0.73354 1.93589 1.39237 1.78095 1.85623 1.93466 1.54173 1.64048 1.83733 1.31433 1.03848 1.17460 1.20554 1.21231 0.99487 0.93559 0.90015 1.21299 0.94332 0.94728 1.00137 1.21539 0.98300 1.01453 0.87076 1.43790 1.00230 0.99268 1.02322 1.94527 1.08405 1.46294 1.87561 1.94561 1.49484 1.65361 1.28837 1.21301 1.01107 0.97232 0.89801 1.19859 0.91958 0.89437 0.95600 1.22403 0.99978 1.07043 0.95274 0.85816 0.86740 0.87123 0.87247 0.90807 0.94859 0.92272 0.92438 0.81314 0.80308 0.79456 0.85832 0.86087 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 11.09 67.79 0.75 -1.53 16 2 C -0.19 -3.90 7.93 25.66 0.20 -3.70 16 3 C 0.13 3.75 5.50 85.64 0.47 4.22 16 4 N -0.97 -33.61 2.80 -523.93 -1.47 -35.08 16 5 C 0.23 9.49 4.17 85.63 0.36 9.84 16 6 C -0.53 -28.69 9.94 25.60 0.25 -28.43 16 7 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 8 C 0.01 0.70 5.47 84.66 0.46 1.16 16 9 N -0.95 -57.42 13.96 21.45 0.30 -57.12 16 10 Si 0.93 40.25 27.47 68.60 1.88 42.13 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 14 S 2.69 91.76 4.82 -56.49 -0.27 91.49 16 15 O -0.98 -42.04 16.62 -128.00 -2.13 -44.17 16 16 O -0.96 -31.85 13.72 -128.00 -1.76 -33.60 16 17 C -0.65 -17.54 5.91 22.27 0.13 -17.40 16 18 C -0.02 -0.59 9.55 22.27 0.21 -0.38 16 19 C -0.09 -1.90 9.56 22.27 0.21 -1.68 16 20 C 0.00 -0.03 6.85 36.37 0.25 0.22 16 21 N 0.02 0.58 4.45 -46.47 -0.21 0.38 16 22 O -0.15 -3.63 18.45 18.88 0.35 -3.28 16 23 O -0.17 -4.42 18.45 18.89 0.35 -4.07 16 24 C -0.08 -1.45 9.24 22.27 0.21 -1.24 16 25 C 0.03 0.72 5.87 -19.87 -0.12 0.61 16 26 C -0.19 -3.23 7.77 71.23 0.55 -2.68 16 27 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 28 H 0.11 1.34 7.88 -2.91 -0.02 1.32 16 29 H 0.11 2.46 7.13 -2.91 -0.02 2.44 16 30 H 0.11 2.67 5.65 -2.39 -0.01 2.66 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.03 1.34 7.05 -2.39 -0.02 1.32 16 33 H 0.06 2.17 6.26 -2.39 -0.01 2.16 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.17 4.23 7.33 -2.91 -0.02 4.21 16 36 H 0.18 3.21 7.61 -2.91 -0.02 3.19 16 37 H 0.19 2.51 7.61 -2.91 -0.02 2.49 16 38 H 0.12 1.77 4.43 -2.39 -0.01 1.76 16 39 H 0.12 1.27 8.13 -2.39 -0.02 1.25 16 40 H 0.09 1.96 3.30 -2.39 -0.01 1.95 16 Total: -1.00 -71.71 345.29 2.03 -69.67 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.04 Total: 14.65 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.95 Total: -41.00 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -1.38 Total: -91.83 kcal Atomic # 8 Polarization: -81.93 SS G_CDS: -3.19 Total: -85.12 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.88 Total: 42.13 kcal Atomic # 16 Polarization: 91.76 SS G_CDS: -0.27 Total: 91.49 kcal Total: -71.71 2.03 -69.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292831402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.859 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds