Wall clock time and date at job start Sat Apr 11 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47303 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47215 * 29.99681 * 3 2 1 6 6 H 1.48502 * 109.47386 * 149.99862 * 3 2 1 7 7 C 1.38820 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99509 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99805 * 180.02562 * 7 2 1 10 10 S 1.65602 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.42098 * 106.40188 * 311.46100 * 10 9 7 12 12 O 1.42097 * 106.40535 * 178.53773 * 10 9 7 13 13 C 1.76202 * 107.21644 * 64.99845 * 10 9 7 14 14 C 1.38355 * 119.85559 * 90.00435 * 13 10 9 15 15 C 1.37956 * 120.14758 * 179.97438 * 14 13 10 16 16 C 1.39573 * 119.85163 * 359.97438 * 15 14 13 17 17 C 1.47854 * 120.14413 * 179.97438 * 16 15 14 18 18 O 1.21552 * 119.99690 * 328.56151 * 17 16 15 19 19 N 1.34775 * 119.99853 * 148.55784 * 17 16 15 20 20 C 1.47168 * 120.94245 * 354.41783 * 19 17 16 21 21 C 1.53300 * 108.37367 * 230.49657 * 20 19 17 22 22 O 1.42964 * 109.26213 * 307.77356 * 21 20 19 23 23 C 1.42956 * 114.16814 * 62.55769 * 22 21 20 24 24 C 1.47149 * 120.97931 * 174.46275 * 19 17 16 25 25 C 1.39575 * 119.71432 * 0.25091 * 16 15 14 26 26 C 1.37960 * 119.84992 * 359.52011 * 25 16 15 27 27 H 0.96994 * 120.00093 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00539 * 359.97438 * 9 7 2 29 29 H 1.08002 * 119.92489 * 359.97149 * 14 13 10 30 30 H 1.08006 * 120.07351 * 179.97438 * 15 14 13 31 31 H 1.08994 * 109.64615 * 110.80144 * 20 19 17 32 32 H 1.08995 * 109.72898 * 350.24036 * 20 19 17 33 33 H 1.08995 * 109.51224 * 187.82644 * 21 20 19 34 34 H 1.08999 * 109.50964 * 67.72209 * 21 20 19 35 35 H 1.09002 * 109.51463 * 57.33875 * 23 22 21 36 36 H 1.08999 * 109.51779 * 177.44137 * 23 22 21 37 37 H 1.08999 * 109.68650 * 9.72744 * 24 19 17 38 38 H 1.09007 * 109.71279 * 249.19716 * 24 19 17 39 39 H 1.08001 * 120.07426 * 179.72416 * 25 16 15 40 40 H 1.08001 * 119.93071 * 180.23386 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 16 4.2076 -2.6363 0.0000 11 8 3.6263 -3.4353 1.0211 12 8 5.5884 -2.3025 -0.0342 13 6 3.8530 -3.4433 -1.5257 14 6 4.6564 -3.2149 -2.6287 15 6 4.3845 -3.8440 -3.8260 16 6 3.2965 -4.7128 -3.9230 17 6 2.9989 -5.3900 -5.2032 18 8 3.2592 -4.8410 -6.2560 19 7 2.4391 -6.6160 -5.2028 20 6 2.2272 -7.3507 -3.9454 21 6 2.8064 -8.7609 -4.1062 22 8 2.2713 -9.3584 -5.2897 23 6 2.6131 -8.6734 -6.4970 24 6 2.0230 -7.2590 -6.4593 25 6 2.4872 -4.9352 -2.8078 26 6 2.7729 -4.3035 -1.6151 27 1 -0.4850 0.8400 -0.0004 28 1 3.8647 -0.3622 0.0004 29 1 5.4982 -2.5427 -2.5522 30 1 5.0122 -3.6645 -4.6864 31 1 1.1600 -7.4141 -3.7334 32 1 2.7342 -6.8366 -3.1289 33 1 2.5382 -9.3656 -3.2399 34 1 3.8918 -8.7017 -4.1870 35 1 3.6977 -8.6130 -6.5869 36 1 2.2067 -9.2156 -7.3508 37 1 2.3947 -6.6834 -7.3070 38 1 0.9352 -7.3139 -6.5016 39 1 1.6412 -5.6029 -2.8775 40 1 2.1497 -4.4775 -0.7503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298486245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:34 Heat of formation + Delta-G solvation = -98.754214 kcal Electronic energy + Delta-G solvation = -27457.226000 eV Core-core repulsion = 23365.235025 eV Total energy + Delta-G solvation = -4091.990975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.89641 -39.00283 -37.99482 -36.32719 -35.16746 -34.95038 -34.83804 -32.35739 -31.62739 -31.05511 -30.79664 -28.23860 -24.80947 -24.32586 -24.21286 -22.57844 -22.07479 -19.86556 -19.05902 -18.44670 -17.80749 -17.41157 -16.88898 -16.40643 -16.24463 -15.93793 -15.55956 -15.43756 -14.97665 -14.81980 -14.58011 -14.28858 -14.04038 -13.53480 -13.50447 -13.28317 -12.86873 -12.84185 -12.69301 -12.54149 -12.05886 -11.78463 -11.54029 -11.31092 -11.26072 -11.17704 -11.08873 -10.96660 -10.57404 -10.54462 -10.50574 -10.29157 -10.19964 -9.90318 -9.17005 -8.87448 -8.86931 -8.56918 -6.53732 -4.02023 0.59277 1.30376 1.42930 2.49455 2.57958 3.05663 3.08416 3.13133 3.41673 3.62337 4.00659 4.06999 4.19596 4.34197 4.56378 4.58486 4.65248 4.78424 4.83329 4.86091 4.95548 4.97485 5.10617 5.21023 5.22253 5.34038 5.38062 5.45445 5.52214 5.67743 5.70951 6.00679 6.07653 6.15992 6.27170 6.38693 6.67878 6.72887 6.90996 6.99222 7.48992 7.85672 8.14948 8.78318 8.92009 10.56271 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.003141 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.764823 B = 8912.610514 C = 9290.652525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.050 3.950 3 Si 0.884 3.116 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.279 4.279 8 H 0.123 0.877 9 N -0.972 5.972 10 S 2.618 3.382 11 O -0.960 6.960 12 O -0.997 6.997 13 C -0.635 4.635 14 C -0.033 4.033 15 C -0.089 4.089 16 C -0.102 4.102 17 C 0.565 3.435 18 O -0.532 6.532 19 N -0.613 5.613 20 C 0.052 3.948 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.049 3.951 24 C 0.077 3.923 25 C -0.122 4.122 26 C -0.022 4.022 27 H 0.278 0.722 28 H 0.391 0.609 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -13.502 -9.396 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.159 4.159 3 Si 0.710 3.290 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.419 4.419 8 H 0.140 0.860 9 N -0.724 5.724 10 S 2.709 3.291 11 O -0.950 6.950 12 O -0.987 6.987 13 C -0.715 4.715 14 C -0.052 4.052 15 C -0.109 4.109 16 C -0.105 4.105 17 C 0.355 3.645 18 O -0.409 6.409 19 N -0.348 5.348 20 C -0.070 4.070 21 C -0.031 4.031 22 O -0.298 6.298 23 C -0.029 4.029 24 C -0.046 4.046 25 C -0.141 4.141 26 C -0.041 4.041 27 H 0.088 0.912 28 H 0.226 0.774 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.156 0.844 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.331 -13.882 -9.371 17.300 hybrid contribution 0.138 1.430 -0.878 1.684 sum 4.469 -12.452 -10.248 16.735 Atomic orbital electron populations 1.69713 1.05791 1.28314 1.46556 1.25135 0.95425 0.98632 0.96737 0.86542 0.80210 0.83074 0.79224 1.19391 1.19976 1.18799 1.19077 0.78410 0.97018 1.47364 0.85967 1.52315 1.15651 1.21396 1.83002 1.06355 0.72915 0.73472 0.76354 1.93499 1.78429 1.68934 1.54127 1.93435 1.33532 1.83725 1.87959 1.32278 1.03796 1.10753 1.24636 1.20872 0.97209 0.96154 0.91001 1.21230 0.96400 0.95143 0.98096 1.19936 0.98203 0.99405 0.92967 1.18484 0.76388 0.80424 0.89184 1.90768 1.52355 1.64876 1.32857 1.47975 1.61874 1.16960 1.07941 1.23132 1.02839 0.93460 0.87579 1.23050 0.97994 0.93277 0.88794 1.87969 1.75362 1.52134 1.14346 1.22987 0.99767 0.92080 0.88069 1.22320 1.00459 0.94086 0.87699 1.21661 0.99637 1.00382 0.92414 1.20946 0.93848 0.91444 0.97871 0.91192 0.77419 0.84073 0.84812 0.89760 0.86656 0.87183 0.92446 0.92562 0.87487 0.87892 0.90335 0.84382 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.85 13.97 55.49 0.78 -22.07 16 2 C 0.05 1.24 5.50 -17.43 -0.10 1.15 16 3 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.28 -6.79 10.12 -15.06 -0.15 -6.94 16 8 H 0.12 3.08 8.05 -52.49 -0.42 2.65 16 9 N -0.97 -20.98 5.55 31.50 0.17 -20.81 16 10 S 2.62 52.63 5.70 -107.50 -0.61 52.01 16 11 O -0.96 -21.42 16.97 -57.17 -0.97 -22.39 16 12 O -1.00 -20.98 17.27 -57.17 -0.99 -21.97 16 13 C -0.63 -11.27 5.90 -39.49 -0.23 -11.51 16 14 C -0.03 -0.54 9.50 -39.64 -0.38 -0.92 16 15 C -0.09 -1.36 9.60 -39.19 -0.38 -1.74 16 16 C -0.10 -1.52 5.40 -104.97 -0.57 -2.08 16 17 C 0.57 8.22 7.44 -12.33 -0.09 8.13 16 18 O -0.53 -9.19 16.22 5.32 0.09 -9.10 16 19 N -0.61 -6.97 3.02 -173.37 -0.52 -7.50 16 20 C 0.05 0.47 4.89 -3.52 -0.02 0.46 16 21 C 0.05 0.37 6.98 37.31 0.26 0.63 16 22 O -0.38 -3.57 10.74 -35.23 -0.38 -3.95 16 23 C 0.05 0.38 6.98 37.31 0.26 0.65 16 24 C 0.08 0.72 6.65 -3.53 -0.02 0.70 16 25 C -0.12 -1.72 7.40 -39.18 -0.29 -2.01 16 26 C -0.02 -0.36 9.50 -39.64 -0.38 -0.74 16 27 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.39 7.94 5.88 -34.47 -0.20 7.73 16 29 H 0.14 2.09 7.60 -52.49 -0.40 1.69 16 30 H 0.13 1.85 7.95 -52.48 -0.42 1.43 16 31 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 32 H 0.12 1.06 4.51 -51.93 -0.23 0.83 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.04 7.06 -51.93 -0.37 0.68 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.14 1.54 5.60 -52.49 -0.29 1.25 16 40 H 0.15 2.31 7.60 -52.49 -0.40 1.91 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -32.14 344.98 -8.46 -40.60 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.43 Total: 10.22 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.08 Total: -14.23 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.43 Total: -50.37 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -2.25 Total: -57.41 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Atomic # 16 Polarization: 52.63 SS G_CDS: -0.61 Total: 52.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.14 -8.46 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298486245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.150 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds