Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47303 * 270.00209 * 3 2 1 5 5 H 1.48502 * 109.47215 * 29.99681 * 3 2 1 6 6 H 1.48502 * 109.47386 * 149.99862 * 3 2 1 7 7 C 1.38820 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99509 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99805 * 180.02562 * 7 2 1 10 10 S 1.65602 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.42098 * 106.40188 * 311.46100 * 10 9 7 12 12 O 1.42097 * 106.40535 * 178.53773 * 10 9 7 13 13 C 1.76202 * 107.21644 * 64.99845 * 10 9 7 14 14 C 1.38355 * 119.85559 * 90.00435 * 13 10 9 15 15 C 1.37956 * 120.14758 * 179.97438 * 14 13 10 16 16 C 1.39573 * 119.85163 * 359.97438 * 15 14 13 17 17 C 1.47854 * 120.14413 * 179.97438 * 16 15 14 18 18 O 1.21552 * 119.99690 * 328.56151 * 17 16 15 19 19 N 1.34775 * 119.99853 * 148.55784 * 17 16 15 20 20 C 1.47168 * 120.94245 * 354.41783 * 19 17 16 21 21 C 1.53300 * 108.37367 * 230.49657 * 20 19 17 22 22 O 1.42964 * 109.26213 * 307.77356 * 21 20 19 23 23 C 1.42956 * 114.16814 * 62.55769 * 22 21 20 24 24 C 1.47149 * 120.97931 * 174.46275 * 19 17 16 25 25 C 1.39575 * 119.71432 * 0.25091 * 16 15 14 26 26 C 1.37960 * 119.84992 * 359.52011 * 25 16 15 27 27 H 0.96994 * 120.00093 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00539 * 359.97438 * 9 7 2 29 29 H 1.08002 * 119.92489 * 359.97149 * 14 13 10 30 30 H 1.08006 * 120.07351 * 179.97438 * 15 14 13 31 31 H 1.08994 * 109.64615 * 110.80144 * 20 19 17 32 32 H 1.08995 * 109.72898 * 350.24036 * 20 19 17 33 33 H 1.08995 * 109.51224 * 187.82644 * 21 20 19 34 34 H 1.08999 * 109.50964 * 67.72209 * 21 20 19 35 35 H 1.09002 * 109.51463 * 57.33875 * 23 22 21 36 36 H 1.08999 * 109.51779 * 177.44137 * 23 22 21 37 37 H 1.08999 * 109.68650 * 9.72744 * 24 19 17 38 38 H 1.09007 * 109.71279 * 249.19716 * 24 19 17 39 39 H 1.08001 * 120.07426 * 179.72416 * 25 16 15 40 40 H 1.08001 * 119.93071 * 180.23386 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 16 4.2076 -2.6363 0.0000 11 8 3.6263 -3.4353 1.0211 12 8 5.5884 -2.3025 -0.0342 13 6 3.8530 -3.4433 -1.5257 14 6 4.6564 -3.2149 -2.6287 15 6 4.3845 -3.8440 -3.8260 16 6 3.2965 -4.7128 -3.9230 17 6 2.9989 -5.3900 -5.2032 18 8 3.2592 -4.8410 -6.2560 19 7 2.4391 -6.6160 -5.2028 20 6 2.2272 -7.3507 -3.9454 21 6 2.8064 -8.7609 -4.1062 22 8 2.2713 -9.3584 -5.2897 23 6 2.6131 -8.6734 -6.4970 24 6 2.0230 -7.2590 -6.4593 25 6 2.4872 -4.9352 -2.8078 26 6 2.7729 -4.3035 -1.6151 27 1 -0.4850 0.8400 -0.0004 28 1 3.8647 -0.3622 0.0004 29 1 5.4982 -2.5427 -2.5522 30 1 5.0122 -3.6645 -4.6864 31 1 1.1600 -7.4141 -3.7334 32 1 2.7342 -6.8366 -3.1289 33 1 2.5382 -9.3656 -3.2399 34 1 3.8918 -8.7017 -4.1870 35 1 3.6977 -8.6130 -6.5869 36 1 2.2067 -9.2156 -7.3508 37 1 2.3947 -6.6834 -7.3070 38 1 0.9352 -7.3139 -6.5016 39 1 1.6412 -5.6029 -2.8775 40 1 2.1497 -4.4775 -0.7503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298486245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = -123.589474 kcal Electronic energy + Delta-G solvation = -27458.302938 eV Core-core repulsion = 23365.235025 eV Total energy + Delta-G solvation = -4093.067913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.92092 -39.99115 -39.11511 -38.16554 -36.80270 -36.57549 -36.08830 -33.39035 -33.30211 -32.31131 -31.84330 -29.10053 -26.15145 -25.74435 -25.22905 -23.79996 -23.02454 -20.86212 -20.76912 -20.19255 -19.00811 -18.78956 -18.10288 -17.78914 -17.11455 -16.93977 -16.76787 -16.43346 -16.28651 -15.93685 -15.81431 -15.47448 -15.37971 -15.01172 -14.66475 -14.58477 -14.48475 -14.12054 -13.98313 -13.37258 -13.26104 -13.08765 -13.04814 -12.90282 -12.88747 -12.47175 -12.33284 -12.23593 -12.20500 -11.95329 -11.84472 -11.76948 -11.33504 -11.11469 -10.50673 -10.36615 -10.11411 -9.75227 -8.29992 -5.94038 -0.75377 -0.34742 0.16630 1.35269 1.38838 1.39653 1.45952 1.60286 2.23823 2.32204 2.47006 2.81484 2.87582 3.13154 3.15840 3.40924 3.64954 3.72962 3.77448 3.90822 4.04172 4.11681 4.17773 4.18450 4.31177 4.40852 4.45563 4.59580 4.68501 4.77568 4.81104 4.84921 4.88067 4.96973 4.97938 5.04047 5.23526 5.61804 5.75513 6.00590 6.05097 6.34613 6.77566 7.00344 7.16215 8.84594 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.003141 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.764823 B = 8912.610514 C = 9290.652525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.931 3.069 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.305 4.305 8 H 0.100 0.900 9 N -0.997 5.997 10 S 2.691 3.309 11 O -0.983 6.983 12 O -0.994 6.994 13 C -0.650 4.650 14 C -0.034 4.034 15 C -0.091 4.091 16 C -0.096 4.096 17 C 0.562 3.438 18 O -0.565 6.565 19 N -0.606 5.606 20 C 0.046 3.954 21 C 0.047 3.953 22 O -0.391 6.391 23 C 0.052 3.948 24 C 0.073 3.927 25 C -0.109 4.109 26 C -0.030 4.030 27 H 0.273 0.727 28 H 0.399 0.601 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.171 0.829 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 -15.733 -10.704 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.168 1.168 7 C -0.437 4.437 8 H 0.117 0.883 9 N -0.752 5.752 10 S 2.782 3.218 11 O -0.974 6.974 12 O -0.983 6.983 13 C -0.736 4.736 14 C -0.053 4.053 15 C -0.111 4.111 16 C -0.100 4.100 17 C 0.351 3.649 18 O -0.445 6.445 19 N -0.339 5.339 20 C -0.076 4.076 21 C -0.031 4.031 22 O -0.310 6.310 23 C -0.025 4.025 24 C -0.049 4.049 25 C -0.128 4.128 26 C -0.049 4.049 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.188 0.812 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.987 -16.047 -10.606 20.145 hybrid contribution -0.078 1.610 -0.624 1.729 sum 5.909 -14.436 -11.230 19.221 Atomic orbital electron populations 1.69822 1.07183 1.28436 1.52100 1.25702 0.96013 1.01495 0.97172 0.85794 0.79735 0.79526 0.79493 1.18823 1.20540 1.16786 1.18731 0.79236 0.96234 1.49546 0.88280 1.51601 1.14644 1.21561 1.87437 1.02070 0.71807 0.72665 0.75306 1.93505 1.78943 1.69567 1.55347 1.93480 1.32596 1.84122 1.88151 1.31413 1.06281 1.13246 1.22688 1.21080 0.97274 0.96232 0.90705 1.21433 0.96756 0.94751 0.98142 1.20203 0.97704 0.98632 0.93424 1.18417 0.76763 0.81310 0.88369 1.90760 1.54126 1.65988 1.33619 1.48103 1.60141 1.16011 1.09651 1.23350 1.04027 0.93827 0.86388 1.23155 0.97868 0.92754 0.89277 1.87967 1.75563 1.52497 1.14930 1.23064 0.99707 0.91197 0.88534 1.22508 1.01249 0.94661 0.86499 1.21903 1.00074 0.99832 0.91001 1.21102 0.93271 0.91430 0.99127 0.91737 0.76551 0.82419 0.83194 0.88080 0.86737 0.84956 0.92559 0.92782 0.85092 0.88778 0.89122 0.81194 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.65 13.97 21.65 0.30 -52.34 16 2 C 0.00 -0.14 5.50 84.86 0.47 0.32 16 3 Si 0.93 39.33 27.74 68.60 1.90 41.23 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.24 -9.30 6.52 99.48 0.65 -8.65 16 7 C -0.31 -15.38 10.12 84.04 0.85 -14.53 16 8 H 0.10 5.27 8.05 -2.91 -0.02 5.25 16 9 N -1.00 -42.89 5.55 -54.27 -0.30 -43.19 16 10 S 2.69 104.16 5.70 -56.49 -0.32 103.84 16 11 O -0.98 -42.92 16.97 -128.00 -2.17 -45.09 16 12 O -0.99 -39.07 17.27 -128.00 -2.21 -41.28 16 13 C -0.65 -21.82 5.90 22.33 0.13 -21.69 16 14 C -0.03 -1.01 9.50 22.23 0.21 -0.80 16 15 C -0.09 -2.54 9.60 22.53 0.22 -2.33 16 16 C -0.10 -2.62 5.40 -20.09 -0.11 -2.72 16 17 C 0.56 15.05 7.44 86.79 0.65 15.69 16 18 O -0.56 -18.64 16.22 -3.88 -0.06 -18.70 16 19 N -0.61 -12.13 3.02 -820.71 -2.48 -14.60 16 20 C 0.05 0.67 4.89 86.35 0.42 1.09 16 21 C 0.05 0.59 6.98 72.08 0.50 1.09 16 22 O -0.39 -6.07 10.74 -148.98 -1.60 -7.67 16 23 C 0.05 0.68 6.98 72.08 0.50 1.18 16 24 C 0.07 1.19 6.65 86.36 0.57 1.76 16 25 C -0.11 -2.78 7.40 22.53 0.17 -2.62 16 26 C -0.03 -0.93 9.50 22.23 0.21 -0.72 16 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.40 15.88 5.88 -96.75 -0.57 15.31 16 29 H 0.16 4.15 7.60 -2.91 -0.02 4.13 16 30 H 0.15 3.72 7.95 -2.91 -0.02 3.70 16 31 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 32 H 0.11 1.70 4.51 -2.39 -0.01 1.69 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.75 7.06 -2.39 -0.02 1.73 16 38 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.17 3.20 5.60 -2.91 -0.02 3.19 16 40 H 0.15 4.52 7.60 -2.91 -0.02 4.50 16 Total: -1.00 -70.99 344.98 -1.68 -72.66 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.47 Total: 29.41 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 4.79 Total: -24.26 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -2.48 Total: -110.14 kcal Atomic # 8 Polarization: -106.70 SS G_CDS: -6.05 Total: -112.75 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Atomic # 16 Polarization: 104.16 SS G_CDS: -0.32 Total: 103.84 kcal Total: -70.99 -1.68 -72.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298486245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.925 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds