Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47037 * 300.00028 * 3 2 1 6 6 H 1.48501 * 109.46862 * 59.99588 * 3 2 1 7 7 C 1.39046 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36872 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00097 * 179.97438 * 9 7 2 11 11 O 1.21598 * 120.00110 * 359.97438 * 10 9 7 12 12 C 1.47733 * 120.00183 * 180.02562 * 10 9 7 13 13 C 1.39658 * 120.14600 * 359.97438 * 12 10 9 14 14 C 1.37922 * 119.84494 * 180.02562 * 13 12 10 15 15 C 1.38398 * 120.14831 * 0.02562 * 14 13 12 16 16 C 1.38356 * 120.30718 * 0.02562 * 15 14 13 17 17 S 1.76202 * 119.92261 * 179.97438 * 16 15 14 18 18 O 1.42097 * 106.40207 * 336.45411 * 17 16 15 19 19 O 1.42098 * 106.39710 * 203.53590 * 17 16 15 20 20 N 1.65595 * 107.22026 * 89.99931 * 17 16 15 21 21 C 1.47150 * 120.98803 * 89.99379 * 20 17 16 22 22 C 1.53297 * 108.38316 * 129.44186 * 21 20 17 23 23 O 1.42968 * 109.26403 * 52.28253 * 22 21 20 24 24 C 1.42962 * 114.16813 * 297.50006 * 23 22 21 25 25 C 1.47154 * 120.97791 * 269.97452 * 20 17 16 26 26 C 1.37959 * 120.14939 * 0.24822 * 16 15 14 27 27 H 0.96994 * 119.99600 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99823 * 0.02562 * 9 7 2 29 29 H 1.07999 * 120.08163 * 0.02562 * 13 12 10 30 30 H 1.07994 * 119.92540 * 179.97438 * 14 13 12 31 31 H 1.07999 * 119.84499 * 180.02562 * 15 14 13 32 32 H 1.09000 * 109.67857 * 9.72716 * 21 20 17 33 33 H 1.08993 * 109.68732 * 249.16536 * 21 20 17 34 34 H 1.09002 * 109.51172 * 172.23104 * 22 21 20 35 35 H 1.08997 * 109.51619 * 292.33217 * 22 21 20 36 36 H 1.08999 * 109.47179 * 302.57307 * 24 23 22 37 37 H 1.08997 * 109.55136 * 182.47596 * 24 23 22 38 38 H 1.08997 * 109.68750 * 350.28220 * 25 20 17 39 39 H 1.09003 * 109.68618 * 110.79616 * 25 20 17 40 40 H 1.08001 * 120.07206 * 179.73326 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0889 -1.2042 0.0001 9 7 1.3245 -2.3895 0.0016 10 6 1.9984 -3.5567 0.0016 11 8 3.2143 -3.5567 0.0002 12 6 1.2597 -4.8361 0.0022 13 6 -0.1369 -4.8397 0.0033 14 6 -0.8202 -6.0378 0.0043 15 6 -0.1250 -7.2345 0.0048 16 6 1.2586 -7.2382 0.0049 17 16 2.1335 -8.7677 0.0062 18 8 1.2479 -9.7359 0.5516 19 8 3.4175 -8.4948 0.5503 20 7 2.3768 -9.1946 -1.5751 21 6 3.5831 -8.7635 -2.2992 22 6 4.2158 -9.9936 -2.9600 23 8 3.2242 -10.6780 -3.7296 24 6 2.1325 -11.1858 -2.9587 25 6 1.3933 -10.0168 -2.2977 26 6 1.9547 -6.0471 0.0095 27 1 -0.4849 0.8400 0.0004 28 1 0.3545 -2.3895 0.0016 29 1 -0.6806 -3.9066 0.0033 30 1 -1.9001 -6.0421 0.0056 31 1 -0.6650 -8.1698 0.0053 32 1 4.2909 -8.3175 -1.6005 33 1 3.3121 -8.0350 -3.0633 34 1 5.0296 -9.6780 -3.6130 35 1 4.6043 -10.6609 -2.1907 36 1 2.5126 -11.8578 -2.1893 37 1 1.4474 -11.7284 -3.6099 38 1 0.6508 -10.4006 -1.5981 39 1 0.9011 -9.4143 -3.0612 40 1 3.0347 -6.0514 0.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299644810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -118.881931 kcal Electronic energy + Delta-G solvation = -27310.271473 eV Core-core repulsion = 23217.407694 eV Total energy + Delta-G solvation = -4092.863779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.47360 -39.46882 -37.54371 -37.38232 -35.96018 -35.09146 -34.24530 -31.92762 -31.69885 -30.93277 -30.74469 -27.37537 -25.54149 -24.53104 -23.41998 -22.74855 -21.76673 -20.19357 -19.01816 -18.47322 -18.00957 -17.50371 -16.71785 -16.09582 -16.02945 -15.82301 -15.52490 -15.31152 -15.10757 -14.81096 -14.49579 -14.41728 -13.88660 -13.82746 -13.76318 -13.01110 -12.92094 -12.54587 -12.41386 -12.36763 -12.21114 -12.17271 -11.87911 -11.77021 -11.66157 -11.40360 -11.26257 -10.94560 -10.72804 -10.54951 -10.47073 -10.39815 -9.78465 -9.34974 -9.12068 -8.79117 -8.66643 -8.22567 -6.69823 -4.02018 0.21450 0.84362 1.25640 2.68309 3.02912 3.14929 3.22269 3.33214 3.51962 3.61788 3.96866 4.10280 4.25596 4.43843 4.49873 4.64943 4.77471 4.87724 4.91368 4.93419 5.01571 5.07076 5.14649 5.25255 5.26802 5.27954 5.45722 5.49213 5.57448 5.64050 5.76119 5.87815 6.00746 6.13939 6.22010 6.42738 6.50983 6.78909 6.90730 7.30751 7.81614 8.34922 8.92160 9.25618 9.81061 10.46787 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002802 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.705359 B = 9991.876087 C =10534.727343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.294 4.294 8 H 0.111 0.889 9 N -0.539 5.539 10 C 0.460 3.540 11 O -0.593 6.593 12 C -0.110 4.110 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.683 4.683 17 S 2.695 3.305 18 O -0.958 6.958 19 O -0.950 6.950 20 N -1.001 6.001 21 C 0.080 3.920 22 C 0.052 3.948 23 O -0.379 6.379 24 C 0.051 3.949 25 C 0.082 3.918 26 C 0.020 3.980 27 H 0.277 0.723 28 H 0.393 0.607 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -19.133 -5.752 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.423 4.423 8 H 0.129 0.871 9 N -0.173 5.173 10 C 0.248 3.752 11 O -0.480 6.480 12 C -0.115 4.115 13 C -0.072 4.072 14 C -0.159 4.159 15 C -0.049 4.049 16 C -0.771 4.771 17 S 2.788 3.212 18 O -0.948 6.948 19 O -0.940 6.940 20 N -0.840 5.840 21 C -0.046 4.046 22 C -0.027 4.027 23 O -0.297 6.297 24 C -0.027 4.027 25 C -0.044 4.044 26 C -0.001 4.001 27 H 0.087 0.913 28 H 0.228 0.772 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.873 -19.392 -5.216 20.100 hybrid contribution -0.845 1.699 0.035 1.898 sum -1.718 -17.693 -5.181 18.516 Atomic orbital electron populations 1.69585 1.06220 1.28914 1.47890 1.25429 0.95734 1.00272 0.96541 0.85686 0.79851 0.80249 0.77985 1.18841 1.20415 1.20401 1.19942 0.93907 0.81971 1.46515 0.87135 1.41911 1.09482 1.04789 1.61082 1.17609 0.87543 0.83066 0.86956 1.90624 1.12985 1.86789 1.57591 1.20508 0.93589 0.95225 1.02129 1.21794 0.93772 0.98915 0.92686 1.21163 1.00253 0.92087 1.02387 1.20852 0.91756 0.99055 0.93259 1.30723 1.06313 1.19543 1.20521 1.01855 0.73660 0.73683 0.71970 1.93549 1.67060 1.58618 1.75597 1.93592 1.39321 1.85738 1.75393 1.57850 1.29569 1.65192 1.31425 1.22238 0.86442 0.97909 0.97980 1.22938 0.90805 0.92882 0.96033 1.87958 1.33417 1.73871 1.34446 1.22913 0.89349 0.94486 0.95974 1.22186 0.91319 0.93127 0.97755 1.20942 1.00713 0.89639 0.88779 0.91296 0.77183 0.84646 0.84913 0.84682 0.87427 0.89998 0.87367 0.92400 0.92461 0.87559 0.87816 0.90217 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 13.05 55.50 0.72 -22.07 16 2 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.29 -7.92 9.68 -15.00 -0.15 -8.06 16 8 H 0.11 3.12 7.15 -52.48 -0.38 2.74 16 9 N -0.54 -13.45 5.23 -11.87 -0.06 -13.51 16 10 C 0.46 11.18 7.72 -12.38 -0.10 11.09 16 11 O -0.59 -16.33 15.92 5.28 0.08 -16.25 16 12 C -0.11 -2.15 5.87 -104.97 -0.62 -2.77 16 13 C -0.05 -0.85 9.54 -39.17 -0.37 -1.22 16 14 C -0.14 -1.86 10.03 -39.64 -0.40 -2.26 16 15 C -0.03 -0.38 9.52 -39.48 -0.38 -0.76 16 16 C -0.68 -10.11 5.97 -39.64 -0.24 -10.35 16 17 S 2.70 36.00 5.75 -107.50 -0.62 35.38 16 18 O -0.96 -13.68 15.89 -57.17 -0.91 -14.59 16 19 O -0.95 -15.32 15.89 -57.17 -0.91 -16.23 16 20 N -1.00 -10.58 3.34 -113.06 -0.38 -10.96 16 21 C 0.08 0.78 6.71 -3.53 -0.02 0.75 16 22 C 0.05 0.44 6.98 37.31 0.26 0.70 16 23 O -0.38 -3.63 10.74 -35.23 -0.38 -4.01 16 24 C 0.05 0.39 6.98 37.31 0.26 0.65 16 25 C 0.08 0.68 6.71 -3.53 -0.02 0.65 16 26 C 0.02 0.36 9.07 -39.17 -0.36 0.01 16 27 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.39 9.16 5.93 -40.82 -0.24 8.91 16 29 H 0.14 2.11 6.41 -52.49 -0.34 1.77 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.14 1.39 7.60 -52.49 -0.40 0.99 16 32 H 0.11 1.08 6.95 -51.93 -0.36 0.72 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.77 6.94 -51.93 -0.36 0.41 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.15 2.73 7.20 -52.49 -0.38 2.35 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -34.15 350.36 -8.95 -43.10 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.55 Total: 9.94 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.22 Total: -11.05 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.28 Total: -46.54 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -2.11 Total: -51.08 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 36.00 SS G_CDS: -0.62 Total: 35.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.15 -8.95 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299644810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.783 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds