Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47037 * 300.00028 * 3 2 1 6 6 H 1.48501 * 109.46862 * 59.99588 * 3 2 1 7 7 C 1.39046 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36872 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00097 * 179.97438 * 9 7 2 11 11 O 1.21598 * 120.00110 * 359.97438 * 10 9 7 12 12 C 1.47733 * 120.00183 * 180.02562 * 10 9 7 13 13 C 1.39658 * 120.14600 * 359.97438 * 12 10 9 14 14 C 1.37922 * 119.84494 * 180.02562 * 13 12 10 15 15 C 1.38398 * 120.14831 * 0.02562 * 14 13 12 16 16 C 1.38356 * 120.30718 * 0.02562 * 15 14 13 17 17 S 1.76202 * 119.92261 * 179.97438 * 16 15 14 18 18 O 1.42097 * 106.40207 * 336.45411 * 17 16 15 19 19 O 1.42098 * 106.39710 * 203.53590 * 17 16 15 20 20 N 1.65595 * 107.22026 * 89.99931 * 17 16 15 21 21 C 1.47150 * 120.98803 * 89.99379 * 20 17 16 22 22 C 1.53297 * 108.38316 * 129.44186 * 21 20 17 23 23 O 1.42968 * 109.26403 * 52.28253 * 22 21 20 24 24 C 1.42962 * 114.16813 * 297.50006 * 23 22 21 25 25 C 1.47154 * 120.97791 * 269.97452 * 20 17 16 26 26 C 1.37959 * 120.14939 * 0.24822 * 16 15 14 27 27 H 0.96994 * 119.99600 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99823 * 0.02562 * 9 7 2 29 29 H 1.07999 * 120.08163 * 0.02562 * 13 12 10 30 30 H 1.07994 * 119.92540 * 179.97438 * 14 13 12 31 31 H 1.07999 * 119.84499 * 180.02562 * 15 14 13 32 32 H 1.09000 * 109.67857 * 9.72716 * 21 20 17 33 33 H 1.08993 * 109.68732 * 249.16536 * 21 20 17 34 34 H 1.09002 * 109.51172 * 172.23104 * 22 21 20 35 35 H 1.08997 * 109.51619 * 292.33217 * 22 21 20 36 36 H 1.08999 * 109.47179 * 302.57307 * 24 23 22 37 37 H 1.08997 * 109.55136 * 182.47596 * 24 23 22 38 38 H 1.08997 * 109.68750 * 350.28220 * 25 20 17 39 39 H 1.09003 * 109.68618 * 110.79616 * 25 20 17 40 40 H 1.08001 * 120.07206 * 179.73326 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0889 -1.2042 0.0001 9 7 1.3245 -2.3895 0.0016 10 6 1.9984 -3.5567 0.0016 11 8 3.2143 -3.5567 0.0002 12 6 1.2597 -4.8361 0.0022 13 6 -0.1369 -4.8397 0.0033 14 6 -0.8202 -6.0378 0.0043 15 6 -0.1250 -7.2345 0.0048 16 6 1.2586 -7.2382 0.0049 17 16 2.1335 -8.7677 0.0062 18 8 1.2479 -9.7359 0.5516 19 8 3.4175 -8.4948 0.5503 20 7 2.3768 -9.1946 -1.5751 21 6 3.5831 -8.7635 -2.2992 22 6 4.2158 -9.9936 -2.9600 23 8 3.2242 -10.6780 -3.7296 24 6 2.1325 -11.1858 -2.9587 25 6 1.3933 -10.0168 -2.2977 26 6 1.9547 -6.0471 0.0095 27 1 -0.4849 0.8400 0.0004 28 1 0.3545 -2.3895 0.0016 29 1 -0.6806 -3.9066 0.0033 30 1 -1.9001 -6.0421 0.0056 31 1 -0.6650 -8.1698 0.0053 32 1 4.2909 -8.3175 -1.6005 33 1 3.3121 -8.0350 -3.0633 34 1 5.0296 -9.6780 -3.6130 35 1 4.6043 -10.6609 -2.1907 36 1 2.5126 -11.8578 -2.1893 37 1 1.4474 -11.7284 -3.6099 38 1 0.6508 -10.4006 -1.5981 39 1 0.9011 -9.4143 -3.0612 40 1 3.0347 -6.0514 0.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299644810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -145.334181 kcal Electronic energy + Delta-G solvation = -27311.418529 eV Core-core repulsion = 23217.407694 eV Total energy + Delta-G solvation = -4094.010834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01629 -40.16182 -39.18533 -38.54583 -37.11239 -36.22033 -35.86520 -33.71491 -32.36267 -32.31253 -32.17458 -28.11283 -27.40923 -25.22290 -24.82601 -24.09447 -22.51206 -21.72593 -20.41135 -20.00467 -19.18755 -18.79982 -17.57685 -17.43100 -17.21294 -16.92184 -16.65346 -16.29359 -16.25238 -15.99568 -15.75748 -15.68301 -15.36117 -15.23481 -15.03573 -14.71202 -13.90731 -13.75322 -13.64798 -13.45992 -13.38287 -13.34123 -13.20411 -13.00246 -12.74817 -12.70375 -12.53278 -12.31201 -12.15056 -11.98512 -11.67751 -11.46263 -11.30135 -10.64727 -10.57257 -10.23232 -10.08977 -9.91131 -8.63118 -6.07899 -0.85469 -0.40919 -0.06513 1.33719 1.39254 1.53675 1.66896 1.92460 2.21597 2.47909 2.65355 2.87384 2.92078 3.15257 3.18580 3.65763 3.73021 3.79644 3.84808 3.97839 4.11723 4.14685 4.19066 4.25127 4.34507 4.41679 4.53102 4.66111 4.68449 4.74692 4.81700 4.88934 4.97582 5.07486 5.13049 5.18603 5.29091 5.39927 5.66264 5.85268 6.16314 6.40802 6.94548 7.32503 7.89335 8.54063 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002802 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.705359 B = 9991.876087 C =10534.727343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.006 4.006 3 Si 0.999 3.001 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.546 5.546 10 C 0.458 3.542 11 O -0.636 6.636 12 C -0.143 4.143 13 C -0.050 4.050 14 C -0.126 4.126 15 C -0.010 4.010 16 C -0.685 4.685 17 S 2.714 3.286 18 O -0.962 6.962 19 O -0.983 6.983 20 N -0.996 5.996 21 C 0.073 3.927 22 C 0.053 3.947 23 O -0.393 6.393 24 C 0.046 3.954 25 C 0.073 3.927 26 C 0.007 3.993 27 H 0.285 0.715 28 H 0.399 0.601 29 H 0.139 0.861 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -20.971 -6.499 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.208 4.208 3 Si 0.822 3.178 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.181 5.181 10 C 0.247 3.753 11 O -0.526 6.526 12 C -0.147 4.147 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.030 4.030 16 C -0.771 4.771 17 S 2.806 3.194 18 O -0.952 6.952 19 O -0.974 6.974 20 N -0.837 5.837 21 C -0.052 4.052 22 C -0.026 4.026 23 O -0.311 6.311 24 C -0.032 4.032 25 C -0.051 4.051 26 C -0.014 4.014 27 H 0.094 0.906 28 H 0.235 0.765 29 H 0.157 0.843 30 H 0.198 0.802 31 H 0.195 0.805 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.313 -21.234 -5.957 22.301 hybrid contribution -0.173 2.002 0.228 2.023 sum -3.486 -19.232 -5.728 20.368 Atomic orbital electron populations 1.69621 1.06964 1.30095 1.47830 1.26183 0.96644 1.02660 0.95269 0.84784 0.78030 0.76302 0.78714 1.19724 1.19029 1.19183 1.19843 0.93148 0.83660 1.50188 0.89824 1.41861 1.09633 1.04611 1.61945 1.18415 0.87370 0.84535 0.84933 1.90567 1.15198 1.87857 1.59016 1.20186 0.95076 0.93155 1.06276 1.21925 0.92183 1.00764 0.92070 1.21652 1.02443 0.90456 0.99919 1.21478 0.90974 1.00878 0.89638 1.30995 1.07503 1.18879 1.19724 1.01248 0.72700 0.72911 0.72528 1.93535 1.67053 1.58210 1.76393 1.93551 1.40941 1.86028 1.76843 1.57676 1.30310 1.65040 1.30660 1.22376 0.86187 0.98890 0.97787 1.23011 0.91018 0.92157 0.96370 1.87943 1.34008 1.73905 1.35238 1.23130 0.89279 0.94261 0.96511 1.22508 0.91155 0.93261 0.98180 1.20809 1.00091 0.90454 0.90018 0.90553 0.76475 0.84283 0.80238 0.80547 0.88382 0.89656 0.85652 0.92130 0.92289 0.84926 0.86481 0.88968 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.88 13.05 21.68 0.28 -46.60 16 2 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 3 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.34 -19.23 9.68 84.10 0.81 -18.42 16 8 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 9 N -0.55 -28.64 5.23 -309.72 -1.62 -30.26 16 10 C 0.46 23.59 7.72 86.75 0.67 24.26 16 11 O -0.64 -37.66 15.92 -4.02 -0.06 -37.72 16 12 C -0.14 -5.75 5.87 -20.09 -0.12 -5.87 16 13 C -0.05 -1.57 9.54 22.54 0.22 -1.35 16 14 C -0.13 -2.85 10.03 22.23 0.22 -2.63 16 15 C -0.01 -0.23 9.52 22.34 0.21 -0.01 16 16 C -0.68 -19.26 5.97 22.23 0.13 -19.13 16 17 S 2.71 68.95 5.75 -56.49 -0.32 68.63 16 18 O -0.96 -24.81 15.89 -128.00 -2.03 -26.85 16 19 O -0.98 -32.15 15.89 -128.00 -2.03 -34.19 16 20 N -1.00 -19.40 3.34 -511.62 -1.71 -21.11 16 21 C 0.07 1.38 6.71 86.35 0.58 1.96 16 22 C 0.05 0.82 6.98 72.08 0.50 1.33 16 23 O -0.39 -6.68 10.74 -148.98 -1.60 -8.28 16 24 C 0.05 0.57 6.98 72.08 0.50 1.08 16 25 C 0.07 0.99 6.71 86.35 0.58 1.57 16 26 C 0.01 0.26 9.07 22.54 0.20 0.47 16 27 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.40 19.30 5.93 -92.71 -0.55 18.75 16 29 H 0.14 4.22 6.41 -2.91 -0.02 4.20 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.18 2.56 7.60 -2.91 -0.02 2.54 16 32 H 0.10 2.04 6.95 -2.39 -0.02 2.02 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.12 1.28 6.94 -2.39 -0.02 1.26 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 5.10 7.20 -2.91 -0.02 5.08 16 Total: -1.00 -77.65 350.36 -1.54 -79.19 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.55 Total: 30.18 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.99 Total: -16.57 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.05 Total: -97.97 kcal Atomic # 8 Polarization: -101.30 SS G_CDS: -5.73 Total: -107.04 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 68.95 SS G_CDS: -0.32 Total: 68.63 kcal Total: -77.65 -1.54 -79.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299644810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.143 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds