Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47106 * 179.97438 * 13 11 10 15 15 S 1.65600 * 119.99728 * 164.99627 * 14 13 11 16 16 O 1.42099 * 106.40230 * 178.53991 * 15 14 13 17 17 O 1.42097 * 106.40790 * 311.45947 * 15 14 13 18 18 C 1.76200 * 107.21938 * 65.00313 * 15 14 13 19 19 C 1.38264 * 119.97590 * 269.72543 * 18 15 14 20 20 C 1.38303 * 120.03929 * 179.78163 * 19 18 15 21 21 C 1.37961 * 119.91860 * 0.47267 * 20 19 18 22 22 C 1.38597 * 120.03882 * 359.77847 * 21 20 19 23 23 C 1.37966 * 120.04488 * 359.97438 * 22 21 20 24 24 C 1.51092 * 107.27254 * 179.97438 * 22 21 20 25 25 O 1.43942 * 105.95504 * 17.68744 * 24 22 21 26 26 C 1.43941 * 104.94851 * 331.55390 * 25 24 22 27 27 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 29 29 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 30 30 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 32 32 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 33 33 H 0.96998 * 120.00106 * 344.99857 * 14 13 11 34 34 H 1.07995 * 119.98090 * 359.97438 * 19 18 15 35 35 H 1.08006 * 120.03897 * 180.24544 * 20 19 18 36 36 H 1.07995 * 120.04921 * 180.02562 * 23 22 21 37 37 H 1.08995 * 110.15304 * 136.81006 * 24 22 21 38 38 H 1.09002 * 110.14978 * 258.56823 * 24 22 21 39 39 H 1.09003 * 110.15139 * 147.56740 * 26 25 24 40 40 H 1.08996 * 110.15636 * 269.25097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 2.0008 -7.2975 0.0005 15 16 2.7867 -8.7072 -0.3703 16 8 1.8249 -9.7463 -0.2506 17 8 3.5169 -8.4578 -1.5635 18 6 3.9811 -8.9867 0.8947 19 6 5.2618 -8.4837 0.7589 20 6 6.1990 -8.6985 1.7530 21 6 5.8572 -9.4236 2.8758 22 6 4.5749 -9.9323 3.0095 23 6 3.6385 -9.7137 2.0202 24 6 4.5191 -10.6673 4.3284 25 8 5.6464 -10.1984 5.0907 26 6 6.6315 -9.8294 4.1081 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5568 0.8902 30 1 3.1568 -3.4354 0.0009 31 1 3.3606 -5.9709 -0.8889 32 1 3.3594 -5.9711 0.8910 33 1 1.0556 -7.3118 0.2175 34 1 5.5296 -7.9201 -0.1225 35 1 7.1983 -8.3022 1.6487 36 1 2.6392 -10.1097 2.1244 37 1 3.5904 -10.4341 4.8492 38 1 4.5982 -11.7418 4.1631 39 1 7.2273 -8.9915 4.4701 40 1 7.2761 -10.6795 3.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338927309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -119.669842 kcal Electronic energy + Delta-G solvation = -26388.615201 eV Core-core repulsion = 22295.717256 eV Total energy + Delta-G solvation = -4092.897945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18639 -39.12270 -37.92953 -37.43945 -36.05872 -34.92751 -34.17062 -32.43743 -32.24882 -31.99421 -28.48473 -28.34529 -26.14291 -25.57228 -22.62611 -22.57320 -22.33245 -20.07788 -19.68274 -18.30670 -17.94071 -17.19887 -16.94776 -16.82689 -16.47698 -16.18969 -15.60261 -15.36670 -15.13704 -14.98728 -14.79650 -14.49678 -14.14116 -13.78243 -13.60261 -13.29532 -13.20440 -12.99520 -12.88858 -12.44199 -12.29016 -12.21939 -12.18629 -12.01217 -11.78754 -11.65656 -11.22756 -11.02068 -10.96437 -10.72509 -10.39179 -9.83703 -9.63636 -9.46548 -9.29788 -9.28336 -8.82648 -8.04000 -6.23143 -4.30577 0.03509 0.31623 0.72111 2.63014 2.95713 3.11346 3.19717 3.27023 3.29668 3.36122 3.50992 3.60584 3.84599 3.94684 4.25826 4.30429 4.33426 4.63691 4.74879 4.77490 4.84090 4.90928 4.97004 5.10954 5.13370 5.21718 5.22708 5.27822 5.37804 5.51971 5.53606 5.64442 5.68608 6.07845 6.25113 6.86743 7.19560 7.25856 7.41776 7.56870 7.88552 8.45248 8.65969 8.90888 9.36078 10.87037 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002519 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.061817 B =11112.520198 C =12289.872625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.547 6.547 13 C 0.094 3.906 14 N -1.100 6.100 15 S 2.704 3.296 16 O -0.954 6.954 17 O -0.952 6.952 18 C -0.673 4.673 19 C -0.013 4.013 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.155 4.155 23 C 0.009 3.991 24 C 0.091 3.909 25 O -0.357 6.357 26 C 0.084 3.916 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.393 0.607 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.430 0.570 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.560 -21.067 6.140 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.280 3.720 12 O -0.426 6.426 13 C -0.036 4.036 14 N -0.864 5.864 15 S 2.791 3.209 16 O -0.944 6.944 17 O -0.942 6.942 18 C -0.759 4.759 19 C -0.033 4.033 20 C -0.133 4.133 21 C -0.079 4.079 22 C -0.156 4.156 23 C -0.010 4.010 24 C 0.014 3.986 25 O -0.276 6.276 26 C 0.008 3.992 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.226 0.774 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.123 0.877 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.580 -21.569 5.632 26.103 hybrid contribution 0.901 1.227 0.538 1.615 sum 14.481 -20.342 6.170 25.721 Atomic orbital electron populations 1.69974 1.06137 1.27333 1.48740 1.24959 0.94924 0.99534 0.94607 0.86345 0.79808 0.82861 0.77788 1.19595 1.20760 1.20798 1.21242 0.93336 0.90321 1.53422 0.91724 1.19178 0.88249 0.81785 0.97991 1.46427 1.11478 1.05843 1.71718 1.20168 0.89326 0.84412 0.78097 1.90664 1.16492 1.84407 1.51035 1.21160 0.94758 0.83721 1.03978 1.55184 1.22738 1.20044 1.88478 1.01680 0.73137 0.72272 0.73764 1.93603 1.59868 1.54117 1.86825 1.93600 1.73611 1.84894 1.42128 1.31134 1.13836 1.13116 1.17819 1.21025 0.90758 0.93674 0.97795 1.20554 1.00594 0.99362 0.92746 1.21428 0.95408 0.94949 0.96101 1.21155 0.95204 1.01203 0.98061 1.20116 0.99227 0.92055 0.89633 1.21808 0.91289 0.97600 0.87854 1.89128 1.25815 1.84655 1.27986 1.21905 0.91287 1.00911 0.85136 0.92412 0.95261 0.95305 0.77363 0.87512 0.89134 0.73082 0.83221 0.84383 0.83691 0.87852 0.90020 0.87693 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.18 9.28 -34.44 -0.32 -14.50 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 10 N -0.71 -13.55 5.55 -61.48 -0.34 -13.89 16 11 C 0.50 8.92 7.90 -10.98 -0.09 8.83 16 12 O -0.55 -12.01 15.73 5.56 0.09 -11.92 16 13 C 0.09 1.14 6.70 -5.19 -0.03 1.11 16 14 N -1.10 -13.31 5.93 -11.66 -0.07 -13.37 16 15 S 2.70 30.89 5.74 -107.50 -0.62 30.27 16 16 O -0.95 -13.09 17.28 -57.18 -0.99 -14.07 16 17 O -0.95 -12.86 16.74 -57.18 -0.96 -13.82 16 18 C -0.67 -6.52 5.95 -39.55 -0.24 -6.76 16 19 C -0.01 -0.11 9.52 -39.55 -0.38 -0.49 16 20 C -0.11 -0.84 10.04 -39.66 -0.40 -1.24 16 21 C -0.08 -0.63 6.32 -104.40 -0.66 -1.29 16 22 C -0.16 -1.36 6.32 -104.40 -0.66 -2.02 16 23 C 0.01 0.08 9.52 -39.66 -0.38 -0.29 16 24 C 0.09 0.66 7.63 36.20 0.28 0.94 16 25 O -0.36 -3.13 11.72 -35.23 -0.41 -3.55 16 26 C 0.08 0.55 7.63 36.19 0.28 0.82 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.39 6.21 8.32 -40.82 -0.34 5.87 16 31 H 0.11 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.43 5.54 7.70 -34.47 -0.27 5.27 16 34 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 35 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.15 1.17 7.62 -52.49 -0.40 0.77 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -36.12 360.51 -9.59 -45.72 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.72 Total: 5.68 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.72 Total: -7.03 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.33 Total: -51.96 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.27 Total: -43.36 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 30.89 SS G_CDS: -0.62 Total: 30.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.12 -9.59 -45.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338927309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.953 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds