Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47163 * 299.99689 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99617 * 3 2 1 7 7 C 1.37885 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99544 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 9 14 14 N 1.46496 * 109.47106 * 179.97438 * 13 11 10 15 15 S 1.65600 * 119.99728 * 164.99627 * 14 13 11 16 16 O 1.42099 * 106.40230 * 178.53991 * 15 14 13 17 17 O 1.42097 * 106.40790 * 311.45947 * 15 14 13 18 18 C 1.76200 * 107.21938 * 65.00313 * 15 14 13 19 19 C 1.38264 * 119.97590 * 269.72543 * 18 15 14 20 20 C 1.38303 * 120.03929 * 179.78163 * 19 18 15 21 21 C 1.37961 * 119.91860 * 0.47267 * 20 19 18 22 22 C 1.38597 * 120.03882 * 359.77847 * 21 20 19 23 23 C 1.37966 * 120.04488 * 359.97438 * 22 21 20 24 24 C 1.51092 * 107.27254 * 179.97438 * 22 21 20 25 25 O 1.43942 * 105.95504 * 17.68744 * 24 22 21 26 26 C 1.43941 * 104.94851 * 331.55390 * 25 24 22 27 27 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46805 * 59.99757 * 9 7 2 29 29 H 1.08992 * 109.46894 * 299.99907 * 9 7 2 30 30 H 0.96994 * 120.00700 * 0.02562 * 10 9 7 31 31 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 32 32 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 33 33 H 0.96998 * 120.00106 * 344.99857 * 14 13 11 34 34 H 1.07995 * 119.98090 * 359.97438 * 19 18 15 35 35 H 1.08006 * 120.03897 * 180.24544 * 20 19 18 36 36 H 1.07995 * 120.04921 * 180.02562 * 23 22 21 37 37 H 1.08995 * 110.15304 * 136.81006 * 24 22 21 38 38 H 1.09002 * 110.14978 * 258.56823 * 24 22 21 39 39 H 1.09003 * 110.15139 * 147.56740 * 26 25 24 40 40 H 1.08996 * 110.15636 * 269.25097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 -0.0009 13 6 2.7333 -6.0288 0.0006 14 7 2.0008 -7.2975 0.0005 15 16 2.7867 -8.7072 -0.3703 16 8 1.8249 -9.7463 -0.2506 17 8 3.5169 -8.4578 -1.5635 18 6 3.9811 -8.9867 0.8947 19 6 5.2618 -8.4837 0.7589 20 6 6.1990 -8.6985 1.7530 21 6 5.8572 -9.4236 2.8758 22 6 4.5749 -9.9323 3.0095 23 6 3.6385 -9.7137 2.0202 24 6 4.5191 -10.6673 4.3284 25 8 5.6464 -10.1984 5.0907 26 6 6.6315 -9.8294 4.1081 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5568 0.8902 30 1 3.1568 -3.4354 0.0009 31 1 3.3606 -5.9709 -0.8889 32 1 3.3594 -5.9711 0.8910 33 1 1.0556 -7.3118 0.2175 34 1 5.5296 -7.9201 -0.1225 35 1 7.1983 -8.3022 1.6487 36 1 2.6392 -10.1097 2.1244 37 1 3.5904 -10.4341 4.8492 38 1 4.5982 -11.7418 4.1631 39 1 7.2273 -8.9915 4.4701 40 1 7.2761 -10.6795 3.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338927309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -149.933090 kcal Electronic energy + Delta-G solvation = -26389.927514 eV Core-core repulsion = 22295.717256 eV Total energy + Delta-G solvation = -4094.210258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75271 -40.63981 -38.53873 -38.42569 -37.05931 -36.37177 -35.62610 -34.36518 -32.84048 -32.60066 -30.02361 -29.01025 -27.63799 -26.17412 -24.47921 -23.24205 -22.89170 -21.60143 -20.62304 -19.46876 -18.87014 -18.35739 -17.87592 -17.48546 -17.46470 -17.06858 -16.99723 -16.76647 -16.52275 -16.16059 -15.59568 -15.32252 -15.10710 -14.79831 -14.63833 -14.40914 -14.17603 -13.97675 -13.86927 -13.59760 -13.52331 -13.32204 -13.26901 -13.22851 -12.96761 -12.86425 -12.74862 -12.26781 -12.20804 -11.97015 -11.44348 -11.30153 -10.98683 -10.81185 -10.66031 -10.22713 -9.87705 -9.85457 -8.28111 -6.44009 -0.80731 -0.40055 0.11822 1.45524 1.45943 1.59327 1.66483 1.78167 2.24609 2.34573 2.56037 2.66451 2.85497 2.99501 3.07717 3.25337 3.54527 3.70101 3.76394 4.07640 4.19192 4.24565 4.30879 4.34191 4.36073 4.47014 4.57503 4.63894 4.68687 4.81613 4.90818 4.95088 5.12405 5.13687 5.25944 5.47059 5.54285 5.67895 5.68225 5.82373 5.87334 6.67184 6.84864 7.24465 7.43523 8.84188 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002519 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.061817 B =11112.520198 C =12289.872625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.088 0.912 9 C 0.264 3.736 10 N -0.701 5.701 11 C 0.494 3.506 12 O -0.593 6.593 13 C 0.103 3.897 14 N -1.107 6.107 15 S 2.724 3.276 16 O -0.982 6.982 17 O -0.974 6.974 18 C -0.677 4.677 19 C -0.020 4.020 20 C -0.112 4.112 21 C -0.082 4.082 22 C -0.168 4.168 23 C -0.006 4.006 24 C 0.088 3.912 25 O -0.378 6.378 26 C 0.081 3.919 27 H 0.268 0.732 28 H -0.011 1.011 29 H -0.009 1.009 30 H 0.414 0.586 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.426 0.574 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.231 -21.038 6.723 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.106 0.894 9 C 0.141 3.859 10 N -0.351 5.351 11 C 0.280 3.720 12 O -0.474 6.474 13 C -0.026 4.026 14 N -0.870 5.870 15 S 2.816 3.184 16 O -0.973 6.973 17 O -0.964 6.964 18 C -0.766 4.766 19 C -0.039 4.039 20 C -0.130 4.130 21 C -0.083 4.083 22 C -0.170 4.170 23 C -0.026 4.026 24 C 0.012 3.988 25 O -0.297 6.297 26 C 0.005 3.995 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.009 0.991 30 H 0.250 0.750 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.264 0.736 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.166 0.834 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.287 -21.564 6.187 28.321 hybrid contribution -0.219 1.116 0.406 1.207 sum 17.067 -20.448 6.592 27.439 Atomic orbital electron populations 1.70135 1.08292 1.28458 1.50190 1.26051 0.95730 1.03911 0.94000 0.85134 0.79271 0.77456 0.77488 1.17356 1.20751 1.20691 1.21668 0.94473 0.90430 1.52502 0.89435 1.18589 0.88722 0.84216 0.94371 1.46101 1.11601 1.05196 1.72247 1.21150 0.89757 0.85095 0.76048 1.90647 1.19090 1.85130 1.52575 1.21281 0.93225 0.80816 1.07291 1.55215 1.22732 1.20269 1.88770 1.00809 0.72674 0.71374 0.73591 1.93561 1.61306 1.55028 1.87365 1.93565 1.73864 1.85053 1.43884 1.30712 1.13858 1.14682 1.17331 1.21348 0.90245 0.93565 0.98729 1.20904 1.01721 0.98529 0.91855 1.21773 0.95293 0.94425 0.96761 1.21360 0.95584 1.01604 0.98416 1.20243 0.99800 0.92541 0.89996 1.21928 0.91338 0.98274 0.87243 1.89102 1.26587 1.84933 1.29112 1.22120 0.90932 1.02274 0.84130 0.92335 0.99300 0.99098 0.74992 0.84780 0.85006 0.73629 0.81469 0.81290 0.83449 0.87291 0.88589 0.86066 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.98 41.04 29.54 68.60 2.03 43.07 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -28.67 9.28 25.60 0.24 -28.44 16 8 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.26 13.75 5.43 85.63 0.46 14.21 16 10 N -0.70 -26.67 5.55 -466.80 -2.59 -29.26 16 11 C 0.49 17.60 7.90 87.66 0.69 18.29 16 12 O -0.59 -26.92 15.73 -3.02 -0.05 -26.97 16 13 C 0.10 2.29 6.70 85.64 0.57 2.86 16 14 N -1.11 -25.93 5.93 -190.79 -1.13 -27.06 16 15 S 2.72 60.03 5.74 -56.49 -0.32 59.70 16 16 O -0.98 -27.17 17.28 -128.00 -2.21 -29.38 16 17 O -0.97 -25.00 16.74 -128.00 -2.14 -27.14 16 18 C -0.68 -11.97 5.95 22.29 0.13 -11.83 16 19 C -0.02 -0.27 9.52 22.29 0.21 -0.06 16 20 C -0.11 -1.26 10.04 22.22 0.22 -1.03 16 21 C -0.08 -1.09 6.32 -19.72 -0.12 -1.22 16 22 C -0.17 -2.67 6.32 -19.72 -0.12 -2.79 16 23 C -0.01 -0.11 9.52 22.22 0.21 0.10 16 24 C 0.09 1.16 7.63 71.36 0.54 1.70 16 25 O -0.38 -5.92 11.72 -148.98 -1.75 -7.66 16 26 C 0.08 0.83 7.63 71.36 0.54 1.38 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.41 12.21 8.32 -92.71 -0.77 11.43 16 31 H 0.13 2.31 7.75 -2.39 -0.02 2.29 16 32 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.43 11.14 7.70 -96.75 -0.75 10.40 16 34 H 0.17 1.65 7.61 -2.91 -0.02 1.63 16 35 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 36 H 0.15 2.36 7.62 -2.91 -0.02 2.34 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -80.98 360.51 -4.24 -85.23 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.41 Total: 20.47 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.05 Total: -6.22 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.44 Total: -111.09 kcal Atomic # 8 Polarization: -85.00 SS G_CDS: -6.15 Total: -91.15 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 60.03 SS G_CDS: -0.32 Total: 59.70 kcal Total: -80.98 -4.24 -85.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338927309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.703 kcal (2) G-P(sol) polarization free energy of solvation -80.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds