Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00320 * 2 1 4 4 N 1.46496 * 109.47403 * 124.99953 * 3 2 1 5 5 C 1.46502 * 119.99683 * 274.83515 * 4 3 2 6 6 C 1.50700 * 109.47030 * 263.68182 * 5 4 3 7 7 H 1.07993 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99654 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00131 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47103 * 89.99983 * 10 8 6 12 12 H 1.48498 * 109.47263 * 210.00052 * 10 8 6 13 13 H 1.48503 * 109.47483 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00114 * 94.83771 * 4 3 2 15 15 O 1.21361 * 119.99748 * 354.62104 * 14 4 3 16 16 C 1.49352 * 119.99709 * 174.62969 * 14 4 3 17 17 O 1.21373 * 120.00622 * 0.29686 * 16 14 4 18 18 N 1.34776 * 119.99520 * 180.30022 * 16 14 4 19 19 C 1.39728 * 119.99988 * 184.81974 * 18 16 14 20 20 C 1.38913 * 120.05225 * 324.58192 * 19 18 16 21 21 C 1.38312 * 119.92397 * 180.02562 * 20 19 18 22 22 F 1.35097 * 119.98372 * 180.02562 * 21 20 19 23 23 C 1.38525 * 120.03569 * 0.02562 * 21 20 19 24 24 C 1.38352 * 120.11334 * 359.97438 * 23 21 20 25 25 Cl 1.73595 * 119.96290 * 179.97438 * 24 23 21 26 26 C 1.38245 * 120.07627 * 0.02562 * 24 23 21 27 27 H 1.08003 * 119.99951 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00321 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99892 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46736 * 4.99721 * 3 2 1 31 31 H 1.09000 * 109.47120 * 245.00360 * 3 2 1 32 32 H 1.09004 * 109.47333 * 23.68737 * 5 4 3 33 33 H 1.09002 * 109.47066 * 143.68415 * 5 4 3 34 34 H 0.96999 * 119.99711 * 180.02562 * 9 8 6 35 35 H 0.97005 * 120.00470 * 4.82182 * 18 16 14 36 36 H 1.07998 * 120.04330 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.93957 * 180.28055 * 23 21 20 38 38 H 1.08001 * 120.02396 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5293 1.7656 2.4514 6 6 2.8592 3.2231 2.6461 7 1 3.3640 3.7715 1.8646 8 6 2.5167 3.8563 3.8220 9 7 2.8041 5.1284 3.9918 10 14 1.6430 2.9078 5.1734 11 1 2.6487 2.3022 6.0828 12 1 0.7724 3.8320 5.9435 13 1 0.8132 1.8351 4.5684 14 6 4.2768 0.9576 0.9579 15 8 4.6382 0.5062 -0.1091 16 6 5.2537 1.0981 2.0788 17 8 4.8911 1.5443 3.1477 18 7 6.5382 0.7294 1.9034 19 6 7.4287 0.7658 2.9795 20 6 7.3211 1.7654 3.9381 21 6 8.2043 1.7992 5.0019 22 9 8.1004 2.7705 5.9351 23 6 9.1954 0.8375 5.1111 24 6 9.3040 -0.1587 4.1572 25 17 10.5478 -1.3615 4.2975 26 6 8.4236 -0.1969 3.0920 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6212 1.4025 -0.9314 32 1 1.4507 1.6246 2.5215 33 1 3.0237 1.1750 3.2227 34 1 2.5635 5.5737 4.8192 35 1 6.8445 0.4389 1.0300 36 1 6.5492 2.5159 3.8523 37 1 9.8814 0.8627 5.9448 38 1 8.5094 -0.9748 2.3477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340617161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -46.600289 kcal Electronic energy + Delta-G solvation = -26969.882902 eV Core-core repulsion = 22754.649479 eV Total energy + Delta-G solvation = -4215.233423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.88252 -40.84727 -39.35500 -37.95833 -36.69886 -36.09891 -34.56635 -33.35369 -32.19505 -30.57006 -29.93090 -28.25313 -26.71431 -24.33157 -23.07555 -22.69586 -21.71899 -20.14459 -19.37402 -18.28738 -17.27868 -17.07515 -16.67885 -16.38045 -16.22781 -15.68355 -15.49967 -15.45170 -15.18206 -14.61767 -14.49497 -14.13774 -13.82124 -13.48967 -13.38900 -13.21646 -12.86590 -12.44410 -12.33414 -12.20419 -11.75242 -11.70194 -11.59388 -11.36768 -11.29708 -11.05105 -10.76064 -10.56250 -10.27779 -10.20219 -9.62045 -9.37012 -8.94393 -8.75925 -8.57655 -8.38493 -8.06399 -6.12445 -4.10615 0.84250 0.90874 1.73700 1.88777 2.25752 2.74039 3.27334 3.29034 3.32649 3.36367 3.66799 3.85573 4.19907 4.37594 4.68321 4.79101 4.80628 5.00828 5.12649 5.15984 5.21760 5.31769 5.43099 5.66843 5.81815 5.92734 5.95573 6.09273 6.11936 6.22921 6.29888 6.70451 6.73010 6.79157 6.83252 7.02838 7.23526 7.49258 7.74497 8.02222 8.33990 8.46465 8.86787 9.47655 11.00531 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003966 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.518960 B = 7058.201620 C = 8942.140740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.519 4.519 7 H 0.073 0.927 8 C 0.083 3.917 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.552 6.552 16 C 0.493 3.507 17 O -0.431 6.431 18 N -0.659 5.659 19 C 0.200 3.800 20 C -0.153 4.153 21 C 0.137 3.863 22 F -0.126 7.126 23 C -0.169 4.169 24 C 0.010 3.990 25 Cl -0.059 7.059 26 C -0.151 4.151 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -11.785 -2.724 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.017 3.983 4 N -0.278 5.278 5 C 0.079 3.921 6 C -0.557 4.557 7 H 0.091 0.909 8 C -0.120 4.120 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.295 3.705 15 O -0.432 6.432 16 C 0.275 3.725 17 O -0.298 6.298 18 N -0.307 5.307 19 C 0.104 3.896 20 C -0.174 4.174 21 C 0.117 3.883 22 F -0.105 7.105 23 C -0.189 4.189 24 C -0.018 4.018 25 Cl -0.030 7.030 26 C -0.173 4.173 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.761 -11.571 -2.326 14.699 hybrid contribution -0.226 -0.378 0.670 0.802 sum 8.535 -11.949 -1.656 14.777 Atomic orbital electron populations 1.23841 0.95741 1.01895 1.00786 1.23309 0.96139 0.98987 0.99652 1.20656 0.92211 0.95484 0.89900 1.47910 1.07280 1.59951 1.12707 1.20331 0.95563 0.97599 0.78599 1.21061 1.39477 0.92175 1.03003 0.90908 1.24707 0.95154 0.94562 0.97620 1.69878 1.47046 1.09925 1.26417 0.86930 0.80108 0.80162 0.82967 1.19751 1.21231 1.19148 1.19612 0.83681 0.79879 0.87357 1.90681 1.78717 1.46441 1.27374 1.20441 0.82604 0.79595 0.89841 1.90949 1.76601 1.36111 1.26114 1.43188 1.08507 1.66896 1.12152 1.17134 0.90294 0.92802 0.89411 1.21613 1.01075 1.00289 0.94419 1.17189 0.95713 0.87417 0.88014 1.91558 1.95436 1.60345 1.63134 1.20886 1.00976 0.95518 1.01530 1.20107 0.92853 0.92546 0.96287 1.98378 1.51898 1.55019 1.97753 1.20762 0.97068 0.99699 0.99732 0.88591 0.88197 0.87500 0.89030 0.89163 0.94955 0.92676 0.92537 0.73985 0.81423 0.83726 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.02 0.42 -1.89 16 2 C -0.16 -2.31 9.84 -36.03 -0.35 -2.67 16 3 C 0.14 2.29 5.83 -5.20 -0.03 2.26 16 4 N -0.55 -10.74 2.46 -176.98 -0.44 -11.17 16 5 C 0.20 4.46 3.85 -5.19 -0.02 4.44 16 6 C -0.52 -13.75 8.34 -34.44 -0.29 -14.04 16 7 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 8 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 9 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 10 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.51 9.72 7.67 -11.63 -0.09 9.63 16 15 O -0.55 -10.31 16.04 5.49 0.09 -10.22 16 16 C 0.49 9.11 7.57 -11.63 -0.09 9.02 16 17 O -0.43 -9.32 9.57 5.48 0.05 -9.27 16 18 N -0.66 -9.58 5.32 -10.31 -0.05 -9.63 16 19 C 0.20 2.82 6.29 -83.76 -0.53 2.29 16 20 C -0.15 -2.47 8.67 -39.30 -0.34 -2.81 16 21 C 0.14 2.01 7.30 -39.45 -0.29 1.72 16 22 F -0.13 -2.01 17.27 2.25 0.04 -1.98 16 23 C -0.17 -2.03 9.81 -39.43 -0.39 -2.41 16 24 C 0.01 0.11 6.31 -39.54 -0.25 -0.14 16 25 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 26 C -0.15 -1.73 9.75 -39.33 -0.38 -2.12 16 27 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 28 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 31 H 0.09 1.43 7.36 -51.93 -0.38 1.05 16 32 H 0.03 0.72 7.08 -51.93 -0.37 0.35 16 33 H 0.06 1.28 5.27 -51.93 -0.27 1.01 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.42 5.08 8.30 -40.82 -0.34 4.74 16 36 H 0.17 3.26 6.24 -52.49 -0.33 2.93 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -30.12 351.25 -6.93 -37.04 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.78 Total: 5.97 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.73 Total: 5.48 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.28 Total: -46.53 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.14 Total: -19.49 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.12 -6.93 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340617161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.558 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds