Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00320 * 2 1 4 4 N 1.46496 * 109.47403 * 124.99953 * 3 2 1 5 5 C 1.46502 * 119.99683 * 274.83515 * 4 3 2 6 6 C 1.50700 * 109.47030 * 263.68182 * 5 4 3 7 7 H 1.07993 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99654 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00131 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47103 * 89.99983 * 10 8 6 12 12 H 1.48498 * 109.47263 * 210.00052 * 10 8 6 13 13 H 1.48503 * 109.47483 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00114 * 94.83771 * 4 3 2 15 15 O 1.21361 * 119.99748 * 354.62104 * 14 4 3 16 16 C 1.49352 * 119.99709 * 174.62969 * 14 4 3 17 17 O 1.21373 * 120.00622 * 0.29686 * 16 14 4 18 18 N 1.34776 * 119.99520 * 180.30022 * 16 14 4 19 19 C 1.39728 * 119.99988 * 184.81974 * 18 16 14 20 20 C 1.38913 * 120.05225 * 324.58192 * 19 18 16 21 21 C 1.38312 * 119.92397 * 180.02562 * 20 19 18 22 22 F 1.35097 * 119.98372 * 180.02562 * 21 20 19 23 23 C 1.38525 * 120.03569 * 0.02562 * 21 20 19 24 24 C 1.38352 * 120.11334 * 359.97438 * 23 21 20 25 25 Cl 1.73595 * 119.96290 * 179.97438 * 24 23 21 26 26 C 1.38245 * 120.07627 * 0.02562 * 24 23 21 27 27 H 1.08003 * 119.99951 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00321 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99892 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46736 * 4.99721 * 3 2 1 31 31 H 1.09000 * 109.47120 * 245.00360 * 3 2 1 32 32 H 1.09004 * 109.47333 * 23.68737 * 5 4 3 33 33 H 1.09002 * 109.47066 * 143.68415 * 5 4 3 34 34 H 0.96999 * 119.99711 * 180.02562 * 9 8 6 35 35 H 0.97005 * 120.00470 * 4.82182 * 18 16 14 36 36 H 1.07998 * 120.04330 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.93957 * 180.28055 * 23 21 20 38 38 H 1.08001 * 120.02396 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5293 1.7656 2.4514 6 6 2.8592 3.2231 2.6461 7 1 3.3640 3.7715 1.8646 8 6 2.5167 3.8563 3.8220 9 7 2.8041 5.1284 3.9918 10 14 1.6430 2.9078 5.1734 11 1 2.6487 2.3022 6.0828 12 1 0.7724 3.8320 5.9435 13 1 0.8132 1.8351 4.5684 14 6 4.2768 0.9576 0.9579 15 8 4.6382 0.5062 -0.1091 16 6 5.2537 1.0981 2.0788 17 8 4.8911 1.5443 3.1477 18 7 6.5382 0.7294 1.9034 19 6 7.4287 0.7658 2.9795 20 6 7.3211 1.7654 3.9381 21 6 8.2043 1.7992 5.0019 22 9 8.1004 2.7705 5.9351 23 6 9.1954 0.8375 5.1111 24 6 9.3040 -0.1587 4.1572 25 17 10.5478 -1.3615 4.2975 26 6 8.4236 -0.1969 3.0920 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6212 1.4025 -0.9314 32 1 1.4507 1.6246 2.5215 33 1 3.0237 1.1750 3.2227 34 1 2.5635 5.5737 4.8192 35 1 6.8445 0.4389 1.0300 36 1 6.5492 2.5159 3.8523 37 1 9.8814 0.8627 5.9448 38 1 8.5094 -0.9748 2.3477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340617161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -64.863044 kcal Electronic energy + Delta-G solvation = -26970.674835 eV Core-core repulsion = 22754.649479 eV Total energy + Delta-G solvation = -4216.025355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.08379 -42.23583 -40.63800 -39.27649 -37.77757 -37.44700 -35.80450 -34.98807 -33.92652 -31.65358 -31.08062 -30.08159 -28.07852 -25.70528 -24.51605 -24.09746 -23.03673 -21.39295 -20.62639 -19.51772 -19.10268 -18.74053 -17.97872 -17.62398 -17.40224 -17.06306 -16.79147 -16.73313 -16.50564 -16.06043 -15.91998 -15.57887 -15.19957 -14.85983 -14.62755 -14.44831 -14.29261 -14.09956 -13.88516 -13.34365 -13.18933 -13.01264 -12.85153 -12.69938 -12.62252 -12.30682 -12.21498 -12.13620 -11.96633 -11.68784 -11.40103 -10.78691 -10.56576 -10.22562 -9.87243 -9.71885 -9.48802 -8.26564 -6.27729 -0.28816 -0.16471 0.43938 0.78899 1.10037 1.35257 1.39951 1.44844 1.54475 2.05121 2.34133 2.35941 2.49041 3.04625 3.11596 3.28328 3.79665 3.84199 3.88606 3.99357 4.02077 4.13477 4.38319 4.45488 4.64702 4.75996 4.77817 4.86883 4.91173 4.96786 5.02864 5.12433 5.31967 5.48263 5.59264 5.68165 5.82494 5.93896 6.06985 6.33604 6.65676 6.68951 6.93580 7.34026 8.90112 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.003966 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.518960 B = 7058.201620 C = 8942.140740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.136 3.864 4 N -0.557 5.557 5 C 0.213 3.787 6 C -0.507 4.507 7 H 0.029 0.971 8 C 0.026 3.974 9 N -0.945 5.945 10 Si 0.931 3.069 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.237 1.237 14 C 0.510 3.490 15 O -0.548 6.548 16 C 0.493 3.507 17 O -0.471 6.471 18 N -0.640 5.640 19 C 0.187 3.813 20 C -0.174 4.174 21 C 0.119 3.881 22 F -0.140 7.140 23 C -0.151 4.151 24 C 0.012 3.988 25 Cl -0.033 7.033 26 C -0.128 4.128 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.435 0.565 36 H 0.126 0.874 37 H 0.169 0.831 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -15.093 -2.901 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.092 3.908 6 C -0.545 4.545 7 H 0.048 0.952 8 C -0.172 4.172 9 N -0.586 5.586 10 Si 0.755 3.245 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.160 1.160 14 C 0.293 3.707 15 O -0.428 6.428 16 C 0.274 3.726 17 O -0.341 6.341 18 N -0.290 5.290 19 C 0.091 3.909 20 C -0.196 4.196 21 C 0.099 3.901 22 F -0.119 7.119 23 C -0.170 4.170 24 C -0.015 4.015 25 Cl -0.004 7.004 26 C -0.149 4.149 27 H 0.139 0.861 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.276 0.724 36 H 0.144 0.856 37 H 0.187 0.813 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.176 -14.922 -2.564 17.705 hybrid contribution -0.190 0.609 0.618 0.888 sum 8.986 -14.313 -1.947 17.012 Atomic orbital electron populations 1.24101 0.95063 1.03323 0.97457 1.23126 0.96697 0.97676 1.02634 1.20812 0.91925 0.96999 0.88752 1.47923 1.08094 1.60079 1.12550 1.19976 0.95955 0.94630 0.80236 1.21195 1.37696 0.94126 1.01517 0.95236 1.25519 0.96283 0.95281 1.00162 1.70030 1.49421 1.11925 1.27243 0.85963 0.79113 0.79530 0.79854 1.20503 1.20932 1.15960 1.19743 0.83701 0.79735 0.87563 1.90668 1.78610 1.46339 1.27216 1.20483 0.83705 0.79229 0.89137 1.90941 1.77532 1.38284 1.27389 1.42974 1.07329 1.65595 1.13059 1.17176 0.91217 0.93448 0.89053 1.21374 1.01156 1.00704 0.96360 1.17326 0.96752 0.88286 0.87762 1.91517 1.95649 1.61144 1.63581 1.21090 0.99752 0.94165 1.02042 1.20195 0.93083 0.92608 0.95650 1.98398 1.50611 1.53769 1.97640 1.20997 0.95068 0.98843 0.99960 0.86127 0.87717 0.87322 0.89293 0.89119 0.93721 0.92888 0.92688 0.72410 0.85612 0.81305 0.80686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 14.32 67.79 0.97 -2.59 16 2 C -0.18 -4.88 9.84 25.65 0.25 -4.63 16 3 C 0.14 4.41 5.83 85.63 0.50 4.91 16 4 N -0.56 -21.86 2.46 -832.20 -2.05 -23.90 16 5 C 0.21 9.59 3.85 85.63 0.33 9.92 16 6 C -0.51 -27.88 8.34 25.60 0.21 -27.67 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 8 C 0.03 1.46 5.47 84.66 0.46 1.92 16 9 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 10 Si 0.93 43.69 27.47 68.60 1.88 45.57 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 14 C 0.51 19.45 7.67 87.24 0.67 20.12 16 15 O -0.55 -20.12 16.04 -3.28 -0.05 -20.18 16 16 C 0.49 18.59 7.57 87.24 0.66 19.25 16 17 O -0.47 -21.29 9.57 -3.32 -0.03 -21.33 16 18 N -0.64 -18.46 5.32 -304.87 -1.62 -20.08 16 19 C 0.19 5.18 6.29 38.20 0.24 5.42 16 20 C -0.17 -5.91 8.67 22.45 0.19 -5.71 16 21 C 0.12 3.54 7.30 22.36 0.16 3.71 16 22 F -0.14 -4.67 17.27 44.97 0.78 -3.89 16 23 C -0.15 -3.34 9.81 22.37 0.22 -3.12 16 24 C 0.01 0.24 6.31 22.30 0.14 0.38 16 25 Cl -0.03 -0.53 28.95 -2.72 -0.08 -0.61 16 26 C -0.13 -2.59 9.75 22.43 0.22 -2.37 16 27 H 0.12 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 29 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.09 2.87 7.76 -2.39 -0.02 2.85 16 31 H 0.09 2.87 7.36 -2.39 -0.02 2.85 16 32 H 0.04 1.91 7.08 -2.38 -0.02 1.89 16 33 H 0.05 2.47 5.27 -2.39 -0.01 2.46 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.44 9.94 8.30 -92.70 -0.77 9.17 16 36 H 0.13 5.38 6.24 -2.91 -0.02 5.36 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.56 351.25 4.67 -63.90 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.30 Total: 19.28 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.23 Total: 19.54 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.37 Total: -102.28 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.08 Total: -41.50 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -68.56 4.67 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340617161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.968 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds