Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50697 * 120.00562 * 2 1 4 4 N 1.46505 * 109.47546 * 124.99647 * 3 2 1 5 5 C 1.46497 * 120.00217 * 274.87279 * 4 3 2 6 6 C 1.50694 * 109.47204 * 262.53540 * 5 4 3 7 7 H 1.07995 * 120.00356 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00110 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47111 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47543 * 119.99487 * 10 8 6 13 13 H 1.48503 * 109.46853 * 239.99828 * 10 8 6 14 14 C 1.34776 * 119.99703 * 94.87083 * 4 3 2 15 15 O 1.21361 * 120.00463 * 3.77845 * 14 4 3 16 16 C 1.49344 * 119.99857 * 183.78352 * 14 4 3 17 17 O 1.21389 * 119.99716 * 354.72910 * 16 14 4 18 18 N 1.34770 * 119.99796 * 175.01009 * 16 14 4 19 19 C 1.39867 * 119.99846 * 184.81771 * 18 16 14 20 20 C 1.38869 * 120.06914 * 32.89225 * 19 18 16 21 21 C 1.38118 * 119.96401 * 179.69865 * 20 19 18 22 22 C 1.38413 * 120.09609 * 0.59625 * 21 20 19 23 23 Cl 1.73609 * 119.92205 * 179.70212 * 22 21 20 24 24 C 1.38369 * 120.14795 * 359.67816 * 22 21 20 25 25 C 1.38284 * 120.03853 * 0.02562 * 24 22 21 26 26 F 1.35106 * 120.05324 * 179.97438 * 25 24 22 27 27 H 1.07998 * 120.00276 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99799 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99799 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47111 * 4.99583 * 3 2 1 31 31 H 1.08999 * 109.47273 * 245.00185 * 3 2 1 32 32 H 1.09009 * 109.47088 * 22.53451 * 5 4 3 33 33 H 1.08999 * 109.47077 * 142.52783 * 5 4 3 34 34 H 0.97010 * 120.00207 * 180.02562 * 9 8 6 35 35 H 0.96995 * 120.00481 * 4.82676 * 18 16 14 36 36 H 1.08005 * 120.02115 * 359.97438 * 20 19 18 37 37 H 1.07993 * 119.95197 * 180.27864 * 21 20 19 38 38 H 1.08000 * 119.97705 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5292 1.7648 2.4516 6 6 2.8835 3.2149 2.6582 7 1 3.4032 3.7594 1.8837 8 6 2.5452 3.8462 3.8363 9 7 1.9129 3.1830 4.7796 10 14 2.9850 5.6435 4.0926 11 1 3.6891 6.1571 2.8903 12 1 1.7449 6.4299 4.3142 13 1 3.8711 5.7721 5.2774 14 6 4.2770 0.9581 0.9578 15 8 4.6793 0.6652 -0.1491 16 6 5.2039 0.9044 2.1275 17 8 4.8296 1.2881 3.2166 18 7 6.4578 0.4353 1.9727 19 6 7.2927 0.2903 3.0854 20 6 6.7539 -0.0461 4.3204 21 6 7.5810 -0.1947 5.4165 22 6 8.9450 0.0031 5.2886 23 17 9.9795 -0.1774 6.6711 24 6 9.4858 0.3439 4.0615 25 6 8.6638 0.4883 2.9589 26 9 9.1914 0.8216 1.7606 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4479 1.6425 2.5144 33 1 3.0085 1.1604 3.2217 34 1 1.6745 3.6272 5.6084 35 1 6.7814 0.1982 1.0895 36 1 5.6892 -0.1957 4.4228 37 1 7.1623 -0.4607 6.3757 38 1 10.5504 0.4973 3.9648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340622842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -50.335229 kcal Electronic energy + Delta-G solvation = -26948.854117 eV Core-core repulsion = 22733.458735 eV Total energy + Delta-G solvation = -4215.395382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.03882 -40.72453 -39.25643 -37.93150 -36.61482 -35.98049 -34.55267 -33.32003 -32.14115 -30.90767 -29.59476 -27.62435 -26.51390 -24.26014 -23.30923 -22.87778 -21.72720 -20.07097 -19.32552 -18.22277 -17.48538 -17.09860 -16.74147 -16.28919 -16.01574 -15.80809 -15.30900 -15.24608 -15.13052 -14.52723 -14.33999 -14.16212 -13.89711 -13.47864 -13.32460 -12.99866 -12.76425 -12.49190 -12.34871 -12.03512 -11.77426 -11.60593 -11.50235 -11.23773 -11.14127 -10.96230 -10.88253 -10.55366 -10.19275 -10.06644 -9.74107 -9.30623 -9.09852 -8.81243 -8.36736 -8.17208 -7.93382 -6.09205 -4.12194 0.76252 0.96690 1.89094 1.95416 2.34006 2.76729 3.26647 3.29124 3.35032 3.38576 3.74048 3.96526 4.04686 4.40159 4.53507 4.78843 4.83660 5.00873 5.22116 5.27625 5.31948 5.39319 5.47132 5.76109 5.81105 5.93429 6.03540 6.03614 6.17473 6.22437 6.52739 6.68436 6.79257 6.92789 7.15479 7.32257 7.38107 7.79740 7.98240 8.10490 8.17270 8.50613 8.89398 9.51547 10.99480 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.003824 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.578000 B = 7321.202095 C = 8885.667823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.137 3.863 4 N -0.553 5.553 5 C 0.223 3.777 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.510 3.490 15 O -0.557 6.557 16 C 0.494 3.506 17 O -0.429 6.429 18 N -0.659 5.659 19 C 0.139 3.861 20 C -0.084 4.084 21 C -0.093 4.093 22 C -0.031 4.031 23 Cl -0.064 7.064 24 C -0.127 4.127 25 C 0.080 3.920 26 F -0.130 7.130 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.262 0.738 35 H 0.421 0.579 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 -9.140 -1.792 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.282 5.282 5 C 0.104 3.896 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.132 4.132 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.439 6.439 16 C 0.276 3.724 17 O -0.296 6.296 18 N -0.308 5.308 19 C 0.043 3.957 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.059 4.059 23 Cl -0.035 7.035 24 C -0.147 4.147 25 C 0.058 3.942 26 F -0.109 7.109 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.254 -8.939 -1.323 12.935 hybrid contribution 0.572 1.080 -0.214 1.240 sum 9.826 -7.860 -1.537 12.676 Atomic orbital electron populations 1.23810 0.95709 1.01828 1.00733 1.23278 0.96171 0.98849 0.99724 1.20629 0.92189 0.95428 0.90249 1.48279 1.07190 1.59184 1.13543 1.20106 0.96093 0.96499 0.76874 1.21259 1.38173 0.94900 1.01663 0.92705 1.24790 0.94828 0.98026 0.95519 1.69920 1.39809 1.36357 1.06559 0.86544 0.78171 0.85037 0.78282 1.19897 1.20944 1.20865 1.19591 0.83721 0.79644 0.87882 1.90672 1.76463 1.51429 1.25297 1.20524 0.82305 0.78872 0.90705 1.90961 1.72931 1.39285 1.26374 1.43227 1.12868 1.64888 1.09829 1.17825 0.88074 1.00244 0.89603 1.21173 1.01958 0.97371 0.89948 1.21033 0.90689 0.99549 0.99956 1.20532 0.91486 1.05490 0.88388 1.98372 1.67229 1.96092 1.41851 1.20712 1.00840 1.03025 0.90080 1.17176 0.90104 1.05107 0.81852 1.91516 1.86577 1.90128 1.42631 0.88626 0.88257 0.87672 0.89284 0.89311 0.94763 0.90914 0.92823 0.74095 0.82369 0.83745 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.02 0.42 -2.00 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.37 5.89 -5.19 -0.03 2.34 16 4 N -0.55 -11.30 2.46 -176.98 -0.44 -11.73 16 5 C 0.22 5.32 4.79 -5.20 -0.02 5.29 16 6 C -0.52 -13.85 8.27 -34.44 -0.28 -14.13 16 7 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 9 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.51 10.19 7.66 -11.64 -0.09 10.10 16 15 O -0.56 -11.16 15.97 5.49 0.09 -11.07 16 16 C 0.49 9.49 7.50 -11.64 -0.09 9.40 16 17 O -0.43 -9.43 10.00 5.46 0.05 -9.38 16 18 N -0.66 -10.44 5.23 -10.23 -0.05 -10.50 16 19 C 0.14 2.06 6.29 -83.63 -0.53 1.53 16 20 C -0.08 -1.21 8.66 -39.39 -0.34 -1.55 16 21 C -0.09 -1.14 9.82 -39.56 -0.39 -1.53 16 22 C -0.03 -0.36 6.32 -39.47 -0.25 -0.61 16 23 Cl -0.06 -0.67 28.95 -51.86 -1.50 -2.17 16 24 C -0.13 -1.46 9.80 -39.52 -0.39 -1.85 16 25 C 0.08 1.06 7.31 -39.24 -0.29 0.78 16 26 F -0.13 -1.75 16.93 2.25 0.04 -1.71 16 27 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.09 1.49 7.24 -51.93 -0.38 1.11 16 32 H 0.03 0.85 8.02 -51.92 -0.42 0.44 16 33 H 0.07 1.86 5.44 -51.93 -0.28 1.58 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.42 6.00 8.10 -40.82 -0.33 5.67 16 36 H 0.16 2.47 6.37 -52.48 -0.33 2.14 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -29.36 354.76 -7.27 -36.63 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.79 Total: 5.69 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.73 Total: 6.83 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.25 Total: -46.51 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.14 Total: -20.45 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.36 -7.27 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340622842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.704 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds