Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99943 * 2 1 4 4 N 1.46503 * 109.47073 * 124.99800 * 3 2 1 5 5 C 1.46502 * 119.99916 * 274.85490 * 4 3 2 6 6 C 1.50699 * 109.47330 * 263.29747 * 5 4 3 7 7 H 1.08000 * 120.00020 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99976 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99799 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47179 * 90.00194 * 10 8 6 12 12 H 1.48501 * 109.47114 * 210.00497 * 10 8 6 13 13 H 1.48507 * 109.46821 * 330.00099 * 10 8 6 14 14 C 1.34771 * 119.99544 * 94.86189 * 4 3 2 15 15 O 1.21353 * 120.00492 * 354.71382 * 14 4 3 16 16 C 1.49348 * 119.99562 * 174.71145 * 14 4 3 17 17 O 1.21378 * 120.00281 * 0.56275 * 16 14 4 18 18 N 1.34776 * 120.00107 * 180.55651 * 16 14 4 19 19 C 1.39824 * 120.00408 * 185.73931 * 18 16 14 20 20 C 1.38867 * 120.07332 * 23.53975 * 19 18 16 21 21 C 1.38221 * 119.93316 * 179.74150 * 20 19 18 22 22 Cl 1.73604 * 119.95528 * 180.24941 * 21 20 19 23 23 C 1.38417 * 120.09506 * 0.51099 * 21 20 19 24 24 C 1.38257 * 120.15179 * 359.76468 * 23 21 20 25 25 C 1.38300 * 120.06459 * 359.97438 * 24 23 21 26 26 F 1.35108 * 120.04446 * 179.97438 * 25 24 23 27 27 H 1.07996 * 119.99765 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00085 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00458 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.46901 * 4.99658 * 3 2 1 31 31 H 1.09003 * 109.46819 * 245.00093 * 3 2 1 32 32 H 1.09002 * 109.46643 * 23.30009 * 5 4 3 33 33 H 1.08996 * 109.46435 * 143.29818 * 5 4 3 34 34 H 0.97001 * 120.00150 * 179.97438 * 9 8 6 35 35 H 0.97004 * 120.00100 * 5.47227 * 18 16 14 36 36 H 1.08000 * 120.03029 * 359.97013 * 20 19 18 37 37 H 1.07996 * 119.92153 * 179.74301 * 23 21 20 38 38 H 1.07998 * 119.96630 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5291 1.7653 2.4516 6 6 2.8670 3.2203 2.6505 7 1 3.3765 3.7678 1.8713 8 6 2.5248 3.8530 3.8267 9 7 1.9040 3.1864 4.7754 10 14 2.9430 5.6568 4.0731 11 1 1.8197 6.4965 3.5848 12 1 3.1668 5.9203 5.5173 13 1 4.1751 5.9875 3.3129 14 6 4.2769 0.9582 0.9578 15 8 4.6389 0.5089 -0.1098 16 6 5.2533 1.0970 2.0793 17 8 4.8890 1.5369 3.1503 18 7 6.5390 0.7338 1.9022 19 6 7.4255 0.7499 2.9834 20 6 6.9416 0.6532 4.2815 21 6 7.8208 0.6641 5.3479 22 17 7.2170 0.5367 6.9706 23 6 9.1817 0.7819 5.1243 24 6 9.6671 0.8841 3.8338 25 6 8.7936 0.8685 2.7617 26 9 9.2684 0.9690 1.5008 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 1.4496 1.6304 2.5191 33 1 3.0186 1.1699 3.2223 34 1 1.6635 3.6314 5.6031 35 1 6.8486 0.4573 1.0254 36 1 5.8796 0.5659 4.4573 37 1 9.8658 0.7943 5.9598 38 1 10.7295 0.9763 3.6628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340623123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -48.374304 kcal Electronic energy + Delta-G solvation = -27174.025390 eV Core-core repulsion = 22958.715040 eV Total energy + Delta-G solvation = -4215.310350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.00262 -40.74417 -39.22572 -37.87329 -36.44826 -35.97560 -34.59483 -33.30659 -32.12703 -30.63333 -29.69165 -27.61569 -26.51756 -24.31499 -23.25972 -22.78822 -21.74233 -20.03353 -19.30680 -18.18629 -17.35834 -17.13664 -16.70533 -16.23327 -16.04913 -15.80648 -15.34245 -15.14637 -15.09912 -14.48763 -14.25418 -14.15611 -13.84646 -13.38533 -13.27094 -13.03934 -12.67154 -12.57330 -12.33006 -12.00984 -11.69068 -11.55846 -11.38175 -11.19913 -10.97536 -10.92606 -10.83516 -10.56501 -10.39256 -10.06515 -9.75867 -9.26425 -8.89468 -8.69382 -8.35905 -8.15542 -7.95832 -6.06887 -4.09246 0.81411 1.01636 1.98391 2.08395 2.35609 2.78905 3.28476 3.32171 3.35930 3.39444 3.77138 3.98127 4.05080 4.41804 4.53239 4.83156 4.90102 5.08876 5.23368 5.26986 5.30267 5.41656 5.54885 5.75891 5.85691 5.93783 6.04016 6.16963 6.18645 6.19388 6.52657 6.74171 6.81796 6.94675 7.17362 7.30184 7.38933 7.80708 7.97040 8.10970 8.17328 8.51497 8.89966 9.53715 11.01877 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.004613 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.041451 B = 6068.154331 C = 7699.172393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.553 5.553 5 C 0.230 3.770 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.509 3.491 15 O -0.557 6.557 16 C 0.489 3.511 17 O -0.419 6.419 18 N -0.656 5.656 19 C 0.149 3.851 20 C -0.102 4.102 21 C -0.019 4.019 22 Cl -0.057 7.057 23 C -0.111 4.111 24 C -0.119 4.119 25 C 0.064 3.936 26 F -0.134 7.134 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -7.217 -2.052 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.282 5.282 5 C 0.111 3.889 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.438 6.438 16 C 0.271 3.729 17 O -0.286 6.286 18 N -0.303 5.303 19 C 0.052 3.948 20 C -0.123 4.123 21 C -0.047 4.047 22 Cl -0.028 7.028 23 C -0.131 4.131 24 C -0.139 4.139 25 C 0.041 3.959 26 F -0.113 7.113 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.260 0.740 36 H 0.189 0.811 37 H 0.160 0.840 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.905 -7.075 -1.551 12.270 hybrid contribution 0.389 1.000 -0.226 1.096 sum 10.294 -6.076 -1.777 12.084 Atomic orbital electron populations 1.23809 0.95720 1.01801 1.00871 1.23281 0.96120 0.98933 0.99579 1.20629 0.92189 0.95474 0.89967 1.48280 1.07027 1.59509 1.13433 1.19959 0.96003 0.96363 0.76551 1.21168 1.38522 0.94326 1.01549 0.92815 1.24772 0.94842 0.97967 0.95505 1.69905 1.40001 1.36291 1.06419 0.86603 0.78693 0.85264 0.77479 1.20737 1.21058 1.20052 1.19611 0.83868 0.80144 0.87278 1.90671 1.78909 1.46825 1.27391 1.20511 0.82533 0.79602 0.90283 1.90966 1.76080 1.35786 1.25754 1.43181 1.09087 1.66277 1.11784 1.17596 0.87561 1.01056 0.88633 1.21390 1.02868 0.99428 0.88634 1.20747 0.93276 1.03992 0.86673 1.98390 1.88265 1.96266 1.19842 1.20826 0.93466 1.01825 0.96978 1.20827 1.00023 1.02347 0.90681 1.17409 0.90473 1.07894 0.80103 1.91497 1.88554 1.93886 1.37329 0.88651 0.88282 0.87595 0.89253 0.89519 0.94639 0.91847 0.92771 0.74020 0.81056 0.84044 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 29.02 0.42 -2.06 16 2 C -0.16 -2.46 9.84 -36.02 -0.35 -2.81 16 3 C 0.14 2.42 5.83 -5.19 -0.03 2.39 16 4 N -0.55 -11.35 2.46 -176.98 -0.44 -11.79 16 5 C 0.23 5.51 4.79 -5.19 -0.02 5.49 16 6 C -0.52 -13.68 7.76 -34.44 -0.27 -13.95 16 7 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 9 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.51 10.24 7.67 -11.64 -0.09 10.15 16 15 O -0.56 -11.15 16.04 5.49 0.09 -11.06 16 16 C 0.49 9.59 7.53 -11.63 -0.09 9.50 16 17 O -0.42 -9.42 9.21 5.47 0.05 -9.37 16 18 N -0.66 -10.71 5.30 -10.25 -0.05 -10.76 16 19 C 0.15 2.30 6.45 -83.66 -0.54 1.76 16 20 C -0.10 -1.64 8.51 -39.35 -0.33 -1.97 16 21 C -0.02 -0.27 6.32 -39.52 -0.25 -0.52 16 22 Cl -0.06 -0.78 28.95 -51.86 -1.50 -2.28 16 23 C -0.11 -1.22 9.82 -39.51 -0.39 -1.61 16 24 C -0.12 -1.28 10.02 -39.55 -0.40 -1.68 16 25 C 0.06 0.84 7.31 -39.24 -0.29 0.55 16 26 F -0.13 -1.77 16.80 2.25 0.04 -1.73 16 27 H 0.10 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.10 1.28 7.84 -52.48 -0.41 0.87 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.09 1.45 7.36 -51.93 -0.38 1.07 16 32 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 33 H 0.06 1.64 5.85 -51.93 -0.30 1.34 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.42 6.18 7.92 -40.82 -0.32 5.85 16 36 H 0.17 3.17 5.70 -52.49 -0.30 2.87 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -29.44 353.34 -7.28 -36.72 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.78 Total: 5.79 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.73 Total: 7.10 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.25 Total: -46.94 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.14 Total: -20.43 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.44 -7.28 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340623123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.658 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds