Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00198 * 2 1 4 4 N 1.46502 * 109.47403 * 125.00310 * 3 2 1 5 5 C 1.46504 * 119.99732 * 274.86185 * 4 3 2 6 6 C 1.50700 * 109.46899 * 263.30144 * 5 4 3 7 7 H 1.07993 * 120.00113 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99674 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00056 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99899 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46884 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47239 * 119.99707 * 10 8 6 13 13 H 1.48501 * 109.46797 * 239.99557 * 10 8 6 14 14 C 1.34771 * 120.00131 * 94.85847 * 4 3 2 15 15 O 1.21356 * 120.00376 * 354.72139 * 14 4 3 16 16 C 1.49354 * 119.99933 * 174.72329 * 14 4 3 17 17 O 1.21386 * 119.99590 * 0.55930 * 16 14 4 18 18 N 1.34768 * 120.00276 * 180.56405 * 16 14 4 19 19 C 1.39762 * 120.00291 * 185.73190 * 18 16 14 20 20 C 1.38945 * 120.06668 * 23.66108 * 19 18 16 21 21 C 1.38095 * 119.98408 * 179.72103 * 20 19 18 22 22 C 1.38287 * 120.11970 * 0.54452 * 21 20 19 23 23 C 1.38484 * 120.13787 * 359.73050 * 22 21 20 24 24 F 1.35090 * 119.99193 * 179.97438 * 23 22 21 25 25 C 1.38428 * 120.01256 * 359.97438 * 23 22 21 26 26 Cl 1.73598 * 120.06076 * 180.02562 * 25 23 22 27 27 H 1.08001 * 120.00027 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99865 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99930 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47327 * 5.00012 * 3 2 1 31 31 H 1.09005 * 109.47316 * 245.00211 * 3 2 1 32 32 H 1.09004 * 109.46830 * 23.30041 * 5 4 3 33 33 H 1.08996 * 109.47305 * 143.29510 * 5 4 3 34 34 H 0.97006 * 119.99602 * 180.02562 * 9 8 6 35 35 H 0.97003 * 119.99689 * 6.01463 * 18 16 14 36 36 H 1.07999 * 120.00201 * 359.97045 * 20 19 18 37 37 H 1.08001 * 119.93987 * 180.27204 * 21 20 19 38 38 H 1.08001 * 119.92853 * 179.74407 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5293 1.7649 2.4516 6 6 2.8670 3.2201 2.6504 7 1 3.3771 3.7674 1.8716 8 6 2.5258 3.8524 3.8272 9 7 1.9051 3.1857 4.7759 10 14 2.9451 5.6560 4.0740 11 1 3.6382 6.1727 2.8667 12 1 1.6966 6.4284 4.2972 13 1 3.8342 5.8003 5.2546 14 6 4.2769 0.9580 0.9577 15 8 4.6389 0.5087 -0.1099 16 6 5.2535 1.0966 2.0793 17 8 4.8891 1.5364 3.1503 18 7 6.5391 0.7334 1.9021 19 6 7.4252 0.7495 2.9829 20 6 6.9411 0.6500 4.2815 21 6 7.8185 0.6603 5.3478 22 6 9.1782 0.7808 5.1265 23 6 9.6657 0.8859 3.8346 24 9 10.9945 1.0040 3.6218 25 6 8.7917 0.8701 2.7612 26 17 9.4016 1.0012 1.1412 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4497 1.6300 2.5192 33 1 3.0188 1.1697 3.2223 34 1 1.6647 3.6308 5.6036 35 1 6.8506 0.4647 1.0236 36 1 5.8791 0.5606 4.4565 37 1 7.4417 0.5785 6.3567 38 1 9.8613 0.7926 5.9629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340629907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -47.324971 kcal Electronic energy + Delta-G solvation = -27080.029548 eV Core-core repulsion = 22864.764701 eV Total energy + Delta-G solvation = -4215.264847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.04139 -40.83258 -39.26022 -37.77675 -36.62182 -36.02335 -34.60547 -33.32770 -32.14878 -30.50647 -29.79777 -27.63510 -26.53720 -24.28235 -23.13155 -22.98625 -21.76407 -20.03863 -19.30297 -18.23453 -17.37262 -16.91368 -16.69272 -16.20127 -16.12085 -15.85084 -15.37996 -15.25496 -15.10865 -14.56301 -14.41289 -14.23385 -13.92774 -13.40332 -13.14336 -12.98532 -12.73159 -12.44899 -12.33530 -11.81065 -11.70755 -11.60977 -11.56833 -11.21468 -11.07801 -10.96148 -10.88405 -10.59012 -10.43277 -10.08530 -9.76193 -9.27292 -8.86784 -8.72977 -8.38175 -8.19821 -7.97806 -6.09934 -4.12059 0.84898 0.98769 1.88666 1.98381 2.33717 2.75320 3.26074 3.34216 3.36391 3.38887 3.76980 3.90138 4.12813 4.39529 4.67494 4.72104 4.83372 5.18270 5.22034 5.23966 5.27365 5.40805 5.57914 5.74895 5.89660 5.95798 6.03193 6.17709 6.24720 6.33615 6.51151 6.76816 6.80831 6.93526 7.16955 7.27750 7.37438 7.78641 7.94962 8.08614 8.14872 8.49892 8.87822 9.51063 10.98821 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.004250 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.916509 B = 6586.852762 C = 8264.489962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.553 5.553 5 C 0.229 3.771 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.556 6.556 16 C 0.490 3.510 17 O -0.418 6.418 18 N -0.656 5.656 19 C 0.205 3.795 20 C -0.133 4.133 21 C -0.059 4.059 22 C -0.171 4.171 23 C 0.129 3.871 24 F -0.128 7.128 25 C -0.119 4.119 26 Cl -0.049 7.049 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -7.294 -2.414 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.283 5.283 5 C 0.111 3.889 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.528 5.528 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.437 6.437 16 C 0.272 3.728 17 O -0.285 6.285 18 N -0.303 5.303 19 C 0.107 3.893 20 C -0.154 4.154 21 C -0.078 4.078 22 C -0.191 4.191 23 C 0.109 3.891 24 F -0.107 7.107 25 C -0.149 4.149 26 Cl -0.020 7.020 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.714 -7.132 -2.186 11.471 hybrid contribution 0.705 1.032 -0.352 1.298 sum 9.419 -6.101 -2.538 11.506 Atomic orbital electron populations 1.23810 0.95720 1.01801 1.00870 1.23279 0.96117 0.98936 0.99580 1.20628 0.92185 0.95475 0.89977 1.48274 1.07020 1.59549 1.13428 1.19965 0.96024 0.96361 0.76580 1.21224 1.38307 0.94359 1.01512 0.92725 1.24778 0.94841 0.97991 0.95522 1.69922 1.40176 1.36251 1.06426 0.86547 0.78078 0.85152 0.78266 1.19933 1.21015 1.20886 1.19615 0.83869 0.80176 0.87301 1.90677 1.78886 1.46745 1.27370 1.20494 0.82468 0.79526 0.90276 1.90959 1.76145 1.35656 1.25748 1.43358 1.09042 1.66028 1.11881 1.17298 0.86480 0.96708 0.88814 1.21692 1.03237 1.01058 0.89403 1.21054 0.91506 0.95353 0.99861 1.21078 0.97041 1.06407 0.94545 1.17030 0.77169 1.02465 0.92464 1.91521 1.30256 1.93243 1.95646 1.20601 0.92402 1.15268 0.86676 1.98371 1.87346 1.96709 1.19570 0.88651 0.88284 0.87584 0.89249 0.89506 0.94620 0.91835 0.92845 0.74100 0.81550 0.83832 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.02 0.42 -2.02 16 2 C -0.16 -2.42 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.39 5.83 -5.20 -0.03 2.36 16 4 N -0.55 -11.18 2.46 -176.98 -0.44 -11.62 16 5 C 0.23 5.39 4.78 -5.19 -0.02 5.37 16 6 C -0.52 -13.42 7.76 -34.44 -0.27 -13.69 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 10 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.51 10.10 7.67 -11.63 -0.09 10.01 16 15 O -0.56 -11.05 16.04 5.49 0.09 -10.97 16 16 C 0.49 9.43 7.53 -11.63 -0.09 9.34 16 17 O -0.42 -9.10 9.21 5.47 0.05 -9.05 16 18 N -0.66 -10.66 5.19 -10.27 -0.05 -10.71 16 19 C 0.21 3.14 6.44 -83.71 -0.54 2.60 16 20 C -0.13 -1.98 8.73 -39.37 -0.34 -2.33 16 21 C -0.06 -0.70 10.04 -39.62 -0.40 -1.10 16 22 C -0.17 -1.92 10.02 -39.47 -0.40 -2.31 16 23 C 0.13 1.69 7.27 -39.42 -0.29 1.40 16 24 F -0.13 -1.67 16.83 2.25 0.04 -1.63 16 25 C -0.12 -1.68 6.34 -39.24 -0.25 -1.93 16 26 Cl -0.05 -0.65 27.43 -51.86 -1.42 -2.07 16 27 H 0.10 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.09 1.44 7.36 -51.93 -0.38 1.05 16 32 H 0.04 0.88 8.02 -51.93 -0.42 0.46 16 33 H 0.06 1.60 5.85 -51.93 -0.30 1.30 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 35 H 0.42 6.32 7.21 -40.82 -0.29 6.03 16 36 H 0.17 2.78 5.71 -52.49 -0.30 2.48 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -28.84 351.45 -7.22 -36.06 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.75 Total: 5.80 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.75 Total: 6.74 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.25 Total: -46.27 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.14 Total: -20.02 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.84 -7.22 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340629907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.265 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds