Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35228 * 107.86953 * 179.87237 * 11 10 9 13 13 C 1.40429 * 107.86501 * 0.38874 * 12 11 10 14 14 N 1.40065 * 125.97321 * 179.72287 * 13 12 11 15 15 C 1.34769 * 120.00231 * 0.02562 * 14 13 12 16 16 O 1.21539 * 120.00347 * 359.97438 * 15 14 13 17 17 C 1.48131 * 120.00132 * 180.02562 * 15 14 13 18 18 C 1.39330 * 119.72758 * 179.72174 * 17 15 14 19 19 C 1.38577 * 119.05690 * 179.78988 * 18 17 15 20 20 C 1.38638 * 118.49054 * 0.48034 * 19 18 17 21 21 C 1.50701 * 120.32013 * 179.72372 * 20 19 18 22 22 F 1.39896 * 109.47013 * 180.02562 * 21 20 19 23 23 F 1.39908 * 109.47114 * 300.02304 * 21 20 19 24 24 F 1.39898 * 109.47304 * 60.02050 * 21 20 19 25 25 C 1.38548 * 119.35657 * 359.74163 * 20 19 18 26 26 N 1.31523 * 120.90365 * 0.02605 * 25 20 19 27 27 N 1.31237 * 108.04636 * 359.76261 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.08009 * 126.06460 * 0.02562 * 11 10 9 32 32 H 1.08002 * 126.06576 * 180.15051 * 12 11 10 33 33 H 0.97007 * 119.99580 * 180.02562 * 14 13 12 34 34 H 1.07999 * 120.46844 * 0.02715 * 18 17 15 35 35 H 1.08002 * 120.75385 * 180.22229 * 19 18 17 36 36 H 1.07995 * 119.54596 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5308 13 6 3.8671 -4.9130 -0.6205 14 7 4.9605 -5.4614 -1.3030 15 6 5.5269 -6.6020 -0.8621 16 8 5.0895 -7.1547 0.1280 17 6 6.6836 -7.1816 -1.5836 18 6 7.2685 -8.3579 -1.1195 19 6 8.3471 -8.8903 -1.8077 20 6 8.8099 -8.2222 -2.9308 21 6 9.9841 -8.7611 -3.7066 22 9 10.2569 -7.9154 -4.7871 23 9 11.1045 -8.8266 -2.8712 24 9 9.6811 -10.0417 -4.1816 25 6 8.1827 -7.0540 -3.3328 26 7 7.1576 -6.5730 -2.6638 27 7 3.2287 -3.8132 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5907 -4.7507 1.7301 32 1 3.5584 -6.3459 1.0457 33 1 5.3099 -5.0201 -2.0930 34 1 6.8843 -8.8498 -0.2381 35 1 8.8191 -9.8027 -1.4742 36 1 8.5410 -6.5309 -4.2070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344259697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -61.139926 kcal Electronic energy + Delta-G solvation = -27409.944478 eV Core-core repulsion = 22674.576640 eV Total energy + Delta-G solvation = -4735.367838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.72192 -48.23901 -48.17690 -41.37568 -40.61185 -39.10271 -35.11682 -34.02365 -33.53078 -32.55194 -30.93383 -29.48448 -27.68887 -26.23530 -24.66227 -24.03699 -23.00923 -21.90255 -20.70971 -19.91086 -19.17035 -19.04811 -18.96918 -18.07194 -17.23256 -17.21535 -16.52148 -15.73700 -15.54098 -15.30314 -15.09047 -14.94872 -14.84896 -14.60631 -14.44074 -14.38384 -14.32020 -13.98330 -13.89839 -13.83997 -13.79711 -13.23833 -12.54075 -12.49605 -12.32558 -11.91208 -11.20916 -10.85899 -10.82778 -10.66441 -10.54822 -10.22264 -10.17437 -10.05786 -9.86041 -9.04279 -8.60601 -8.30256 -7.62763 -6.60688 -4.34985 -0.32640 0.45411 1.98811 1.99626 2.44036 2.67881 3.03464 3.07659 3.35721 3.36748 3.38585 3.41609 3.57523 3.61289 3.72422 3.81776 3.98145 4.21053 4.30032 4.39206 4.47657 5.00995 5.11105 5.12549 5.15010 5.37427 5.63748 5.69351 6.04310 6.28968 6.37139 6.51004 6.70054 6.93665 7.19978 7.35678 7.63744 7.76035 7.94305 8.30662 8.45509 8.58170 9.33133 10.77003 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002023 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.717023 B =13835.337268 C =14808.713674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.314 5.314 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.254 3.746 14 N -0.605 5.605 15 C 0.574 3.426 16 O -0.503 6.503 17 C 0.122 3.878 18 C -0.111 4.111 19 C -0.025 4.025 20 C -0.225 4.225 21 C 0.517 3.483 22 F -0.172 7.172 23 F -0.172 7.172 24 F -0.172 7.172 25 C 0.155 3.845 26 N -0.453 5.453 27 N -0.294 5.294 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.423 0.577 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.896 -20.429 -5.435 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.315 4.315 13 C 0.001 3.999 14 N -0.252 5.252 15 C 0.357 3.643 16 O -0.375 6.375 17 C -0.016 4.016 18 C -0.131 4.131 19 C -0.051 4.051 20 C -0.229 4.229 21 C 0.462 3.538 22 F -0.153 7.153 23 F -0.153 7.153 24 F -0.154 7.154 25 C -0.005 4.005 26 N -0.164 5.164 27 N -0.125 5.125 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.187 0.813 32 H 0.180 0.820 33 H 0.260 0.740 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 17.792 -17.330 -5.817 25.509 hybrid contribution 1.053 -2.957 0.242 3.148 sum 18.845 -20.287 -5.575 28.245 Atomic orbital electron populations 1.70856 1.06771 1.30428 1.45862 1.25928 0.96308 1.02824 0.93090 0.83420 0.74816 0.74537 0.76880 1.20506 1.21230 1.21085 1.22094 0.95392 0.90392 1.56821 0.91808 1.19800 0.86278 0.82776 0.98109 1.48853 1.23190 1.19488 1.18044 1.22579 1.00404 0.90056 0.96707 1.21526 1.02231 1.06328 1.01440 1.19050 0.91540 0.94528 0.94822 1.42169 1.28970 1.23924 1.30127 1.17614 0.82142 0.80540 0.84006 1.90765 1.61728 1.60379 1.24665 1.21380 0.95086 0.92933 0.92240 1.22160 0.94759 0.95113 1.01092 1.21425 0.93772 0.98633 0.91230 1.21300 0.99865 1.01136 1.00555 1.17994 0.82388 0.75800 0.77621 1.93201 1.94414 1.70829 1.56843 1.93253 1.54598 1.96142 1.71357 1.93249 1.93043 1.40107 1.88970 1.22785 0.89336 0.90700 0.97684 1.67820 1.11075 1.31574 1.05942 1.77400 1.03287 1.15927 1.15869 0.92277 0.93504 0.94632 0.81294 0.82049 0.73964 0.81671 0.82582 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.65 55.43 0.76 -25.35 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.77 29.90 -169.99 -5.08 19.69 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -16.97 9.24 -34.44 -0.32 -17.29 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.19 5.57 -5.19 -0.03 6.17 16 10 N -0.31 -7.21 3.67 -62.56 -0.23 -7.44 16 11 C 0.05 1.01 11.43 -17.25 -0.20 0.82 16 12 C -0.28 -5.41 9.60 -39.83 -0.38 -5.79 16 13 C 0.25 5.02 8.11 -154.46 -1.25 3.77 16 14 N -0.61 -9.57 5.43 -11.91 -0.06 -9.64 16 15 C 0.57 8.07 7.78 -12.20 -0.09 7.97 16 16 O -0.50 -7.94 13.45 5.33 0.07 -7.87 16 17 C 0.12 1.30 6.75 -83.01 -0.56 0.74 16 18 C -0.11 -0.87 9.63 -39.05 -0.38 -1.25 16 19 C -0.02 -0.15 9.76 -39.31 -0.38 -0.53 16 20 C -0.22 -1.52 5.39 -104.36 -0.56 -2.08 16 21 C 0.52 3.39 3.33 36.01 0.12 3.51 16 22 F -0.17 -1.17 16.00 2.25 0.04 -1.13 16 23 F -0.17 -1.22 17.24 2.25 0.04 -1.18 16 24 F -0.17 -1.21 17.24 2.25 0.04 -1.17 16 25 C 0.15 1.18 10.59 -17.57 -0.19 0.99 16 26 N -0.45 -4.55 9.54 -9.81 -0.09 -4.64 16 27 N -0.29 -6.75 12.42 31.43 0.39 -6.36 16 28 H 0.27 7.53 7.22 -40.82 -0.29 7.23 16 29 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 31 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 32 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 33 H 0.42 6.01 8.15 -40.82 -0.33 5.67 16 34 H 0.17 1.12 7.64 -52.49 -0.40 0.72 16 35 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.18 0.96 7.16 -52.49 -0.38 0.58 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -32.59 338.47 -5.95 -38.54 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -2.59 Total: 3.89 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.32 Total: -2.43 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.76 Total: -53.43 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.11 Total: -3.49 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.59 -5.95 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344259697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.600 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds