Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35228 * 107.86953 * 179.87237 * 11 10 9 13 13 C 1.40429 * 107.86501 * 0.38874 * 12 11 10 14 14 N 1.40065 * 125.97321 * 179.72287 * 13 12 11 15 15 C 1.34769 * 120.00231 * 0.02562 * 14 13 12 16 16 O 1.21539 * 120.00347 * 359.97438 * 15 14 13 17 17 C 1.48131 * 120.00132 * 180.02562 * 15 14 13 18 18 C 1.39330 * 119.72758 * 179.72174 * 17 15 14 19 19 C 1.38577 * 119.05690 * 179.78988 * 18 17 15 20 20 C 1.38638 * 118.49054 * 0.48034 * 19 18 17 21 21 C 1.50701 * 120.32013 * 179.72372 * 20 19 18 22 22 F 1.39896 * 109.47013 * 180.02562 * 21 20 19 23 23 F 1.39908 * 109.47114 * 300.02304 * 21 20 19 24 24 F 1.39898 * 109.47304 * 60.02050 * 21 20 19 25 25 C 1.38548 * 119.35657 * 359.74163 * 20 19 18 26 26 N 1.31523 * 120.90365 * 0.02605 * 25 20 19 27 27 N 1.31237 * 108.04636 * 359.76261 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.08009 * 126.06460 * 0.02562 * 11 10 9 32 32 H 1.08002 * 126.06576 * 180.15051 * 12 11 10 33 33 H 0.97007 * 119.99580 * 180.02562 * 14 13 12 34 34 H 1.07999 * 120.46844 * 0.02715 * 18 17 15 35 35 H 1.08002 * 120.75385 * 180.22229 * 19 18 17 36 36 H 1.07995 * 119.54596 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5308 13 6 3.8671 -4.9130 -0.6205 14 7 4.9605 -5.4614 -1.3030 15 6 5.5269 -6.6020 -0.8621 16 8 5.0895 -7.1547 0.1280 17 6 6.6836 -7.1816 -1.5836 18 6 7.2685 -8.3579 -1.1195 19 6 8.3471 -8.8903 -1.8077 20 6 8.8099 -8.2222 -2.9308 21 6 9.9841 -8.7611 -3.7066 22 9 10.2569 -7.9154 -4.7871 23 9 11.1045 -8.8266 -2.8712 24 9 9.6811 -10.0417 -4.1816 25 6 8.1827 -7.0540 -3.3328 26 7 7.1576 -6.5730 -2.6638 27 7 3.2287 -3.8132 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5907 -4.7507 1.7301 32 1 3.5584 -6.3459 1.0457 33 1 5.3099 -5.0201 -2.0930 34 1 6.8843 -8.8498 -0.2381 35 1 8.8191 -9.8027 -1.4742 36 1 8.5410 -6.5309 -4.2070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344259697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -81.472210 kcal Electronic energy + Delta-G solvation = -27410.826152 eV Core-core repulsion = 22674.576640 eV Total energy + Delta-G solvation = -4736.249512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.25618 -48.77161 -48.71408 -42.49094 -41.78813 -40.23723 -36.56098 -35.65872 -34.48128 -33.25043 -32.62523 -31.07887 -28.73737 -27.77032 -25.49546 -25.14224 -24.42120 -23.01901 -22.19573 -21.24354 -19.79859 -19.57716 -19.53777 -19.29021 -19.05861 -18.27486 -17.69226 -16.93643 -16.69861 -16.35262 -15.98338 -15.83307 -15.64893 -15.59442 -15.39917 -15.14069 -15.11711 -14.92425 -14.91146 -14.84894 -14.67824 -14.39081 -14.15580 -13.95239 -13.74632 -13.24638 -13.07429 -12.62652 -12.12246 -11.95833 -11.79834 -11.45430 -11.43380 -11.02721 -10.94388 -10.72111 -10.69720 -9.89500 -9.27201 -8.78696 -6.56407 -1.02854 -0.11076 0.81407 1.13067 1.29344 1.44306 1.51079 1.57248 1.78843 1.98094 2.08055 2.44952 2.47531 2.50211 2.80064 2.83837 3.00665 3.28394 3.40066 3.48866 3.65795 3.81784 3.85205 4.11423 4.47056 4.50596 4.55127 4.60515 4.68261 4.77121 4.78311 4.98869 5.10826 5.53698 5.73782 5.89667 5.98774 6.25058 6.32551 6.40475 6.74360 6.90944 7.18867 8.58089 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002023 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.717023 B =13835.337268 C =14808.713674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.058 3.942 12 C -0.287 4.287 13 C 0.262 3.738 14 N -0.608 5.608 15 C 0.577 3.423 16 O -0.521 6.521 17 C 0.100 3.900 18 C -0.102 4.102 19 C -0.012 4.012 20 C -0.217 4.217 21 C 0.524 3.476 22 F -0.173 7.173 23 F -0.173 7.173 24 F -0.173 7.173 25 C 0.152 3.848 26 N -0.473 5.473 27 N -0.343 5.343 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.206 0.794 32 H 0.176 0.824 33 H 0.428 0.572 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.895 -21.886 -5.255 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.660 4.660 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.090 4.090 12 C -0.318 4.318 13 C 0.008 3.992 14 N -0.256 5.256 15 C 0.363 3.637 16 O -0.395 6.395 17 C -0.037 4.037 18 C -0.122 4.122 19 C -0.038 4.038 20 C -0.221 4.221 21 C 0.469 3.531 22 F -0.154 7.154 23 F -0.154 7.154 24 F -0.154 7.154 25 C -0.009 4.009 26 N -0.184 5.184 27 N -0.174 5.174 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.223 0.777 32 H 0.193 0.807 33 H 0.267 0.733 34 H 0.195 0.805 35 H 0.208 0.792 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 19.807 -18.833 -5.637 27.907 hybrid contribution 0.572 -2.702 0.135 2.765 sum 20.379 -21.535 -5.502 30.155 Atomic orbital electron populations 1.70948 1.07414 1.30200 1.47279 1.27257 0.96452 1.06039 0.92090 0.82889 0.74156 0.71182 0.77794 1.19953 1.19614 1.20155 1.22279 0.94658 0.92151 1.56907 0.93719 1.19454 0.86376 0.82704 0.97529 1.48623 1.23856 1.20215 1.19584 1.23243 1.00559 0.88576 0.96631 1.21769 1.02080 1.06676 1.01283 1.19407 0.91587 0.93446 0.94755 1.42341 1.28271 1.24660 1.30341 1.18164 0.82401 0.79442 0.83708 1.90727 1.62554 1.60654 1.25572 1.20958 0.95034 0.94387 0.93342 1.22299 0.94737 0.93897 1.01306 1.21791 0.92600 0.99208 0.90173 1.21397 0.99484 1.00656 1.00514 1.17859 0.82112 0.75663 0.77460 1.93205 1.94401 1.70868 1.56907 1.93257 1.54655 1.96138 1.71391 1.93254 1.93034 1.40156 1.88977 1.23095 0.88680 0.91172 0.97935 1.67721 1.12151 1.32335 1.06189 1.77308 1.04666 1.18051 1.17345 0.92928 0.92525 0.96474 0.77725 0.80667 0.73340 0.80545 0.79204 0.78500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.79 13.65 21.45 0.29 -53.49 16 2 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 3 Si 1.12 49.75 29.90 68.60 2.05 51.81 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.62 -35.38 9.24 25.60 0.24 -35.14 16 8 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 9 C 0.26 13.23 5.57 85.64 0.48 13.70 16 10 N -0.34 -15.92 3.67 -351.84 -1.29 -17.21 16 11 C 0.06 2.22 11.43 83.52 0.95 3.17 16 12 C -0.29 -10.80 9.60 22.11 0.21 -10.59 16 13 C 0.26 10.50 8.11 133.36 1.08 11.58 16 14 N -0.61 -19.37 5.43 -309.89 -1.68 -21.05 16 15 C 0.58 15.95 7.78 86.87 0.68 16.63 16 16 O -0.52 -16.05 13.45 -3.84 -0.05 -16.10 16 17 C 0.10 2.01 6.75 41.90 0.28 2.30 16 18 C -0.10 -1.37 9.63 22.61 0.22 -1.15 16 19 C -0.01 -0.11 9.76 22.45 0.22 0.11 16 20 C -0.22 -2.35 5.39 -19.69 -0.11 -2.46 16 21 C 0.52 5.48 3.33 71.24 0.24 5.72 16 22 F -0.17 -1.96 16.00 44.97 0.72 -1.24 16 23 F -0.17 -1.99 17.24 44.97 0.78 -1.21 16 24 F -0.17 -1.96 17.24 44.97 0.78 -1.19 16 25 C 0.15 2.02 10.59 84.81 0.90 2.92 16 26 N -0.47 -8.99 9.54 -184.94 -1.76 -10.76 16 27 N -0.34 -16.16 12.42 -54.49 -0.68 -16.84 16 28 H 0.26 15.03 7.22 -92.71 -0.67 14.36 16 29 H 0.06 2.75 7.94 -2.39 -0.02 2.73 16 30 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 32 H 0.18 6.08 5.91 -2.91 -0.02 6.06 16 33 H 0.43 12.43 8.15 -92.70 -0.76 11.67 16 34 H 0.18 1.96 7.64 -2.91 -0.02 1.93 16 35 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.20 1.74 7.16 -2.91 -0.02 1.71 16 Total: -1.00 -71.10 338.47 5.52 -65.58 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.53 Total: 15.50 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.85 Total: 6.21 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -5.12 Total: -119.35 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.05 Total: -16.10 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 2.27 Total: -3.64 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.81 kcal Total: -71.10 5.52 -65.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344259697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.892 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds