Wall clock time and date at job start Sat Apr 11 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33768 * 122.45224 * 2 1 4 4 S 1.70612 * 111.00211 * 179.77099 * 3 2 1 5 5 C 1.75836 * 91.58399 * 0.32815 * 4 3 2 6 6 C 1.46440 * 125.46152 * 179.97438 * 5 4 3 7 7 O 1.21720 * 119.99658 * 179.69410 * 6 5 4 8 8 N 1.34769 * 119.99891 * 359.69304 * 6 5 4 9 9 C 1.46498 * 120.00009 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47314 * 180.02562 * 9 8 6 11 11 H 1.08998 * 115.49201 * 29.61782 * 10 9 8 12 12 C 1.57114 * 118.26980 * 243.46015 * 10 9 8 13 13 H 1.09000 * 121.24576 * 3.77279 * 12 10 9 14 14 C 1.54391 * 118.19972 * 162.01281 * 12 10 9 15 15 N 1.48155 * 104.61624 * 86.20383 * 14 12 10 16 16 C 1.36932 * 127.84099 * 140.41487 * 15 14 12 17 17 H 1.07997 * 120.00056 * 195.61544 * 16 15 14 18 18 C 1.38817 * 119.99827 * 15.61600 * 16 15 14 19 19 N 1.31614 * 120.00197 * 9.10103 * 18 16 15 20 20 Si 1.86804 * 119.99863 * 189.11079 * 18 16 15 21 21 H 1.48494 * 109.47290 * 89.99921 * 20 18 16 22 22 H 1.48504 * 109.46759 * 210.00088 * 20 18 16 23 23 H 1.48499 * 109.46879 * 329.99182 * 20 18 16 24 24 C 1.48150 * 104.32123 * 320.41234 * 15 14 12 25 25 C 1.53000 * 117.44123 * 175.00170 * 10 9 8 26 26 H 1.09006 * 119.54017 * 355.87476 * 25 10 9 27 27 C 1.36789 * 109.07588 * 359.67837 * 5 4 3 28 28 Cl 1.73593 * 123.38174 * 180.24111 * 27 5 4 29 29 H 1.09006 * 109.46726 * 269.97366 * 1 2 3 30 30 H 1.08995 * 109.47311 * 29.97257 * 1 2 3 31 31 H 1.09000 * 109.47115 * 149.97416 * 1 2 3 32 32 H 1.07999 * 124.49850 * 0.02680 * 3 2 1 33 33 H 0.97001 * 120.00131 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47544 * 59.99933 * 9 8 6 35 35 H 1.09003 * 109.46952 * 299.99711 * 9 8 6 36 36 H 1.08995 * 110.40805 * 327.42138 * 14 12 10 37 37 H 1.09001 * 110.50897 * 205.03264 * 14 12 10 38 38 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 39 39 H 1.09003 * 110.40444 * 280.80193 * 24 15 14 40 40 H 1.08999 * 110.40302 * 158.37160 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1288 0.0000 4 16 3.8969 0.7901 0.0064 5 6 3.5957 -0.9422 -0.0010 6 6 4.6252 -1.9836 -0.0005 7 8 4.3034 -3.1575 -0.0003 8 7 5.9290 -1.6422 -0.0002 9 6 6.9590 -2.6840 -0.0003 10 6 8.3434 -2.0325 0.0007 11 1 8.4034 -1.0591 0.4875 12 6 9.2805 -2.2745 -1.2370 13 1 8.9374 -2.8384 -2.1043 14 6 10.4702 -1.3137 -1.4501 15 7 11.5633 -1.8844 -0.6289 16 6 12.8942 -1.9650 -0.9410 17 1 13.5421 -2.6202 -0.3778 18 6 13.4104 -1.2044 -1.9812 19 7 12.6690 -0.2774 -2.5496 20 14 15.1575 -1.4969 -2.5743 21 1 15.1496 -2.5164 -3.6539 22 1 15.7218 -0.2266 -3.0971 23 1 15.9898 -1.9798 -1.4433 24 6 10.8899 -2.3479 0.6066 25 6 9.5573 -2.9563 0.1191 26 1 9.4064 -4.0258 0.2659 27 6 2.2454 -1.1612 -0.0006 28 17 1.5346 -2.7449 -0.0008 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8019 2.1226 0.0004 33 1 6.1854 -0.7067 0.0000 34 1 6.8492 -3.3035 -0.8904 35 1 6.8489 -3.3038 0.8896 36 1 10.2169 -0.3122 -1.1026 37 1 10.7576 -1.2892 -2.5013 38 1 13.0298 0.2543 -3.2762 39 1 10.7021 -1.5078 1.2752 40 1 11.4931 -3.1055 1.1068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978225833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:08 Heat of formation + Delta-G solvation = 50.302666 kcal Electronic energy + Delta-G solvation = -23589.345463 eV Core-core repulsion = 19944.527243 eV Total energy + Delta-G solvation = -3644.818219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.99529 -38.84379 -38.31257 -36.41082 -35.00665 -33.33264 -31.60695 -30.73067 -28.39540 -27.50300 -27.11182 -25.30729 -23.93822 -21.20661 -21.02028 -20.02162 -19.56380 -19.21373 -18.56557 -16.91537 -16.75872 -16.03945 -15.58454 -15.16864 -14.75095 -14.58675 -14.27687 -14.12007 -13.83537 -13.58634 -13.22258 -13.02658 -12.87938 -12.67043 -12.58786 -12.47853 -11.82388 -11.70359 -11.49912 -11.27274 -11.11165 -11.06852 -10.85867 -10.71655 -10.29477 -10.14929 -10.11418 -9.75890 -9.46101 -9.23842 -9.14635 -8.92171 -8.76957 -8.63141 -6.88930 -5.81953 -3.16208 0.01124 0.82115 1.32079 1.78577 2.17771 2.93142 2.96614 3.36989 3.42411 3.44060 4.03501 4.35511 4.43840 4.50880 4.69652 4.85047 4.94018 5.14927 5.21275 5.28443 5.32702 5.34843 5.41649 5.50308 5.70597 5.75269 5.77833 5.83725 5.90383 5.93599 6.24274 6.26430 6.52944 6.63677 6.68602 6.90356 7.30925 7.34308 7.51193 7.69908 8.01020 8.18888 9.09111 9.71774 10.48779 11.32379 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.002084 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.033697 B =13432.930949 C =14129.961275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.111 4.111 3 C -0.230 4.230 4 S 0.249 5.751 5 C -0.262 4.262 6 C 0.584 3.416 7 O -0.513 6.513 8 N -0.718 5.718 9 C 0.158 3.842 10 C -0.155 4.155 11 H 0.104 0.896 12 C -0.167 4.167 13 H 0.105 0.895 14 C 0.182 3.818 15 N -0.595 5.595 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.152 3.848 25 C -0.160 4.160 26 H 0.103 0.897 27 C 0.018 3.982 28 Cl -0.013 7.013 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.893 3.450 5.936 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.368 4.368 4 S 0.518 5.482 5 C -0.384 4.384 6 C 0.369 3.631 7 O -0.390 6.390 8 N -0.370 5.370 9 C 0.036 3.964 10 C -0.174 4.174 11 H 0.122 0.878 12 C -0.187 4.187 13 H 0.123 0.877 14 C 0.057 3.943 15 N -0.318 5.318 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.026 3.974 25 C -0.180 4.180 26 H 0.121 0.879 27 C -0.024 4.024 28 Cl 0.016 6.984 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.581 3.461 5.783 24.525 hybrid contribution -0.421 -0.519 -0.361 0.760 sum -24.002 2.942 5.422 24.782 Atomic orbital electron populations 1.20570 0.88543 1.03459 1.02961 1.18469 0.98479 0.90092 1.05410 1.25058 0.98912 1.03282 1.09576 1.83253 1.03057 0.95573 1.66363 1.24562 0.96722 0.98811 1.18278 1.16727 0.81616 0.87325 0.77406 1.90890 1.81420 1.17606 1.49104 1.45879 1.05154 1.10738 1.75189 1.20863 0.84085 0.89103 1.02380 1.23127 0.89496 1.00547 1.04260 0.87850 1.25023 0.99340 1.03998 0.90364 0.87740 1.21085 0.83006 0.91417 0.98812 1.45218 1.03431 1.69930 1.13242 1.19007 0.82686 1.19191 1.14599 0.90552 1.24899 0.98288 0.96807 1.00324 1.69891 1.36270 1.23056 1.27011 0.86106 0.83736 0.77079 0.78763 1.21482 1.21649 1.20531 1.21178 0.89962 0.96081 0.90181 1.23835 0.94443 0.97397 1.02362 0.87886 1.20197 0.90835 0.88820 1.02595 1.98398 1.82643 1.21288 1.96093 0.90680 0.90950 0.90832 0.80521 0.76672 0.90988 0.90863 0.95968 0.89185 0.93559 0.95769 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 9.86 36.01 0.35 -0.23 16 2 C -0.11 -0.94 5.78 -106.42 -0.62 -1.55 16 3 C -0.23 -1.59 10.67 29.16 0.31 -1.28 16 4 S 0.25 1.94 22.15 -107.50 -2.38 -0.44 16 5 C -0.26 -2.97 6.45 -36.81 -0.24 -3.21 16 6 C 0.58 7.94 7.78 -12.96 -0.10 7.84 16 7 O -0.51 -8.50 15.09 5.17 0.08 -8.42 16 8 N -0.72 -8.79 5.55 -61.69 -0.34 -9.13 16 9 C 0.16 2.12 5.98 -4.04 -0.02 2.09 16 10 C -0.16 -2.32 5.54 -88.39 -0.49 -2.80 16 11 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 12 C -0.17 -3.09 7.00 -86.99 -0.61 -3.70 16 13 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 14 C 0.18 4.29 5.73 -2.40 -0.01 4.27 16 15 N -0.59 -15.07 3.38 -168.85 -0.57 -15.64 16 16 C -0.23 -6.27 10.35 -15.06 -0.16 -6.42 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 19 N -0.92 -26.53 10.86 55.49 0.60 -25.93 16 20 Si 0.91 21.79 29.56 -169.99 -5.03 16.77 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.14 7.03 -2.41 -0.02 3.12 16 25 C -0.16 -2.77 6.71 -89.22 -0.60 -3.36 16 26 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 27 C 0.02 0.20 6.38 -40.33 -0.26 -0.05 16 28 Cl -0.01 -0.16 26.18 -51.86 -1.36 -1.51 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.32 8.12 -51.93 -0.42 -0.11 16 31 H 0.07 0.47 7.40 -51.93 -0.38 0.09 16 32 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.40 4.12 7.51 -40.82 -0.31 3.82 16 34 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.38 6.51 -51.93 -0.34 2.04 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -32.02 361.55 -11.31 -43.32 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.21 Total: 1.08 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.55 Total: -5.56 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.31 Total: -50.69 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.44 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.36 Total: -1.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.02 -11.31 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978225833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.626 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds