Wall clock time and date at job start Sat Apr 11 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33768 * 122.45224 * 2 1 4 4 S 1.70612 * 111.00211 * 179.77099 * 3 2 1 5 5 C 1.75836 * 91.58399 * 0.32815 * 4 3 2 6 6 C 1.46440 * 125.46152 * 179.97438 * 5 4 3 7 7 O 1.21720 * 119.99658 * 179.69410 * 6 5 4 8 8 N 1.34769 * 119.99891 * 359.69304 * 6 5 4 9 9 C 1.46498 * 120.00009 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47314 * 180.02562 * 9 8 6 11 11 H 1.08998 * 115.49201 * 29.61782 * 10 9 8 12 12 C 1.57114 * 118.26980 * 243.46015 * 10 9 8 13 13 H 1.09000 * 121.24576 * 3.77279 * 12 10 9 14 14 C 1.54391 * 118.19972 * 162.01281 * 12 10 9 15 15 N 1.48155 * 104.61624 * 86.20383 * 14 12 10 16 16 C 1.36932 * 127.84099 * 140.41487 * 15 14 12 17 17 H 1.07997 * 120.00056 * 195.61544 * 16 15 14 18 18 C 1.38817 * 119.99827 * 15.61600 * 16 15 14 19 19 N 1.31614 * 120.00197 * 9.10103 * 18 16 15 20 20 Si 1.86804 * 119.99863 * 189.11079 * 18 16 15 21 21 H 1.48494 * 109.47290 * 89.99921 * 20 18 16 22 22 H 1.48504 * 109.46759 * 210.00088 * 20 18 16 23 23 H 1.48499 * 109.46879 * 329.99182 * 20 18 16 24 24 C 1.48150 * 104.32123 * 320.41234 * 15 14 12 25 25 C 1.53000 * 117.44123 * 175.00170 * 10 9 8 26 26 H 1.09006 * 119.54017 * 355.87476 * 25 10 9 27 27 C 1.36789 * 109.07588 * 359.67837 * 5 4 3 28 28 Cl 1.73593 * 123.38174 * 180.24111 * 27 5 4 29 29 H 1.09006 * 109.46726 * 269.97366 * 1 2 3 30 30 H 1.08995 * 109.47311 * 29.97257 * 1 2 3 31 31 H 1.09000 * 109.47115 * 149.97416 * 1 2 3 32 32 H 1.07999 * 124.49850 * 0.02680 * 3 2 1 33 33 H 0.97001 * 120.00131 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47544 * 59.99933 * 9 8 6 35 35 H 1.09003 * 109.46952 * 299.99711 * 9 8 6 36 36 H 1.08995 * 110.40805 * 327.42138 * 14 12 10 37 37 H 1.09001 * 110.50897 * 205.03264 * 14 12 10 38 38 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 39 39 H 1.09003 * 110.40444 * 280.80193 * 24 15 14 40 40 H 1.08999 * 110.40302 * 158.37160 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1288 0.0000 4 16 3.8969 0.7901 0.0064 5 6 3.5957 -0.9422 -0.0010 6 6 4.6252 -1.9836 -0.0005 7 8 4.3034 -3.1575 -0.0003 8 7 5.9290 -1.6422 -0.0002 9 6 6.9590 -2.6840 -0.0003 10 6 8.3434 -2.0325 0.0007 11 1 8.4034 -1.0591 0.4875 12 6 9.2805 -2.2745 -1.2370 13 1 8.9374 -2.8384 -2.1043 14 6 10.4702 -1.3137 -1.4501 15 7 11.5633 -1.8844 -0.6289 16 6 12.8942 -1.9650 -0.9410 17 1 13.5421 -2.6202 -0.3778 18 6 13.4104 -1.2044 -1.9812 19 7 12.6690 -0.2774 -2.5496 20 14 15.1575 -1.4969 -2.5743 21 1 15.1496 -2.5164 -3.6539 22 1 15.7218 -0.2266 -3.0971 23 1 15.9898 -1.9798 -1.4433 24 6 10.8899 -2.3479 0.6066 25 6 9.5573 -2.9563 0.1191 26 1 9.4064 -4.0258 0.2659 27 6 2.2454 -1.1612 -0.0006 28 17 1.5346 -2.7449 -0.0008 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.8019 2.1226 0.0004 33 1 6.1854 -0.7067 0.0000 34 1 6.8492 -3.3035 -0.8904 35 1 6.8489 -3.3038 0.8896 36 1 10.2169 -0.3122 -1.1026 37 1 10.7576 -1.2892 -2.5013 38 1 13.0298 0.2543 -3.2762 39 1 10.7021 -1.5078 1.2752 40 1 11.4931 -3.1055 1.1068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978225833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:07 Heat of formation + Delta-G solvation = 31.390499 kcal Electronic energy + Delta-G solvation = -23590.165556 eV Core-core repulsion = 19944.527243 eV Total energy + Delta-G solvation = -3645.638312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00611 -40.16012 -39.25624 -37.20398 -36.33618 -34.99982 -32.82806 -32.06367 -29.30873 -28.86565 -28.51257 -26.88399 -24.96721 -22.84998 -22.06256 -21.35172 -20.75470 -20.24186 -19.44964 -18.82964 -17.67867 -17.02465 -16.84317 -16.54619 -16.13992 -15.68372 -15.40455 -15.14537 -14.88287 -14.65850 -14.58799 -14.39171 -14.19311 -13.72080 -13.35065 -13.27225 -13.17605 -12.96136 -12.88027 -12.73683 -12.44246 -12.34823 -12.12750 -11.97450 -11.92263 -11.88103 -11.74632 -11.20495 -10.90604 -10.71421 -10.55682 -10.17916 -9.81283 -9.39461 -8.90384 -7.91786 -5.27778 -0.72146 0.12101 0.71147 1.11003 1.40423 1.46323 1.48243 1.56804 1.94089 2.00200 2.47959 2.64446 3.26118 3.54366 3.60981 3.72674 3.84850 3.89065 4.05173 4.19515 4.24848 4.42421 4.45044 4.53097 4.60158 4.68144 4.70627 4.77965 4.81976 4.93195 5.02954 5.13393 5.18460 5.30802 5.35427 5.37711 5.45687 5.54610 5.67583 6.18526 6.34921 7.01682 7.02825 7.68549 8.46861 9.21891 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.002084 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.033697 B =13432.930949 C =14129.961275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.128 4.128 3 C -0.212 4.212 4 S 0.292 5.708 5 C -0.301 4.301 6 C 0.583 3.417 7 O -0.551 6.551 8 N -0.712 5.712 9 C 0.166 3.834 10 C -0.111 4.111 11 H 0.112 0.888 12 C -0.181 4.181 13 H 0.111 0.889 14 C 0.188 3.812 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.063 4.063 19 N -0.946 5.946 20 Si 0.979 3.021 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.147 3.853 25 C -0.152 4.152 26 H 0.125 0.875 27 C 0.010 3.990 28 Cl -0.032 7.032 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.213 0.787 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.004 0.996 37 H 0.052 0.948 38 H 0.250 0.750 39 H 0.028 0.972 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.095 4.323 6.858 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C -0.350 4.350 4 S 0.561 5.439 5 C -0.423 4.423 6 C 0.370 3.630 7 O -0.431 6.431 8 N -0.364 5.364 9 C 0.043 3.957 10 C -0.130 4.130 11 H 0.130 0.870 12 C -0.201 4.201 13 H 0.129 0.871 14 C 0.063 3.937 15 N -0.346 5.346 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.257 4.257 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.192 1.192 24 C 0.022 3.978 25 C -0.172 4.172 26 H 0.143 0.857 27 C -0.034 4.034 28 Cl -0.003 7.003 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.790 4.344 6.735 26.053 hybrid contribution -0.086 -0.691 -0.596 0.917 sum -24.877 3.652 6.139 25.882 Atomic orbital electron populations 1.20626 0.87023 1.04120 1.03661 1.18675 0.99682 0.89504 1.06164 1.25531 0.98381 1.04377 1.06698 1.83104 1.03499 0.92343 1.64950 1.24484 0.96286 1.00547 1.20939 1.17020 0.82069 0.87410 0.76492 1.90862 1.82012 1.19278 1.50946 1.45765 1.04732 1.11044 1.74887 1.20712 0.83162 0.89197 1.02618 1.23031 0.89433 1.00332 1.00252 0.87000 1.24712 0.99814 1.03711 0.91815 0.87075 1.20822 0.84680 0.91858 0.96345 1.45543 1.03340 1.70247 1.15436 1.19376 0.84124 1.18856 1.14556 0.90245 1.25729 1.02229 0.96935 1.00779 1.70080 1.37848 1.24060 1.27433 0.85074 0.79339 0.76579 0.78310 1.21343 1.21964 1.19207 1.21328 0.91348 0.96383 0.88764 1.23772 0.93959 0.98780 1.00715 0.85713 1.20545 0.91193 0.88841 1.02820 1.98384 1.82869 1.22855 1.96182 0.89943 0.88840 0.91664 0.77061 0.75510 0.91466 0.90003 0.97795 0.92976 0.94110 0.95406 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.86 71.24 0.70 -0.25 16 2 C -0.13 -1.87 5.78 -21.03 -0.12 -2.00 16 3 C -0.21 -2.19 10.67 66.80 0.71 -1.48 16 4 S 0.29 3.79 22.15 -56.49 -1.25 2.54 16 5 C -0.30 -6.47 6.45 24.07 0.16 -6.32 16 6 C 0.58 15.40 7.78 86.38 0.67 16.07 16 7 O -0.55 -18.22 15.09 -4.41 -0.07 -18.29 16 8 N -0.71 -16.30 5.55 -467.31 -2.59 -18.89 16 9 C 0.17 4.11 5.98 86.38 0.52 4.63 16 10 C -0.11 -3.10 5.54 -9.35 -0.05 -3.15 16 11 H 0.11 3.01 8.04 -2.39 -0.02 2.99 16 12 C -0.18 -6.57 7.00 -8.44 -0.06 -6.63 16 13 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 14 C 0.19 9.08 5.73 86.53 0.50 9.58 16 15 N -0.62 -31.86 3.38 -688.11 -2.33 -34.18 16 16 C -0.24 -13.45 10.35 84.04 0.87 -12.58 16 17 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 18 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 19 N -0.95 -56.46 10.86 21.65 0.24 -56.22 16 20 Si 0.98 45.36 29.56 68.60 2.03 47.38 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.15 5.92 7.03 86.53 0.61 6.53 16 25 C -0.15 -4.99 6.71 -9.89 -0.07 -5.06 16 26 H 0.13 3.61 8.14 -2.38 -0.02 3.59 16 27 C 0.01 0.21 6.38 21.78 0.14 0.35 16 28 Cl -0.03 -0.76 26.18 -2.72 -0.07 -0.83 16 29 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.06 0.76 7.40 -2.39 -0.02 0.74 16 32 H 0.21 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.41 7.63 7.51 -92.71 -0.70 6.93 16 34 H 0.07 1.79 8.00 -2.39 -0.02 1.77 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.05 2.88 6.51 -2.39 -0.02 2.87 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.67 361.55 1.37 -70.30 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.38 Total: 11.59 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.03 Total: -3.41 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.68 Total: -109.29 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.07 Total: -18.29 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.25 Total: 2.54 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -71.67 1.37 -70.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978225833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.693 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds