Wall clock time and date at job start Sat Apr 11 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32689 * 123.45356 * 2 1 4 4 S 1.75494 * 110.63403 * 180.02562 * 3 2 1 5 5 C 1.70450 * 92.46329 * 359.82249 * 4 3 2 6 6 Cl 1.73603 * 124.60512 * 180.19021 * 5 4 3 7 7 C 1.36228 * 110.78919 * 0.31326 * 5 4 3 8 8 C 1.47040 * 123.48929 * 179.89371 * 7 5 4 9 9 O 1.21656 * 120.00055 * 269.70611 * 8 7 5 10 10 N 1.34778 * 119.99956 * 89.70920 * 8 7 5 11 11 C 1.46499 * 119.99801 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47156 * 179.97438 * 11 10 8 13 13 H 1.09005 * 115.49029 * 29.62107 * 12 11 10 14 14 C 1.57116 * 118.27542 * 243.46951 * 12 11 10 15 15 H 1.09000 * 121.24402 * 3.76926 * 14 12 11 16 16 C 1.54384 * 118.20333 * 162.01505 * 14 12 11 17 17 N 1.48152 * 104.62094 * 86.19484 * 16 14 12 18 18 C 1.36932 * 127.83984 * 140.41307 * 17 16 14 19 19 H 1.07997 * 120.00056 * 195.62204 * 18 17 16 20 20 C 1.38817 * 119.99827 * 15.62261 * 18 17 16 21 21 N 1.31614 * 120.00197 * 9.10103 * 20 18 17 22 22 Si 1.86804 * 119.99863 * 189.11079 * 20 18 17 23 23 H 1.48491 * 109.47430 * 59.99369 * 22 20 18 24 24 H 1.48498 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46745 * 299.99440 * 22 20 18 26 26 C 1.48150 * 104.32237 * 320.41592 * 17 16 14 27 27 C 1.52991 * 117.44573 * 175.00283 * 12 11 10 28 28 H 1.09006 * 119.53720 * 355.88164 * 27 12 11 29 29 H 1.09006 * 109.47363 * 269.97729 * 1 2 3 30 30 H 1.08997 * 109.47431 * 29.97140 * 1 2 3 31 31 H 1.09004 * 109.47407 * 149.97724 * 1 2 3 32 32 H 1.08005 * 124.67929 * 0.05901 * 3 2 1 33 33 H 0.96992 * 120.00078 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47424 * 60.00441 * 11 10 8 35 35 H 1.08997 * 109.47875 * 299.99979 * 11 10 8 36 36 H 1.09002 * 110.40883 * 327.41470 * 16 14 12 37 37 H 1.08992 * 110.50938 * 205.03157 * 16 14 12 38 38 H 0.96999 * 120.00326 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.40934 * 280.80147 * 26 17 16 40 40 H 1.08999 * 110.40302 * 158.36621 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2384 1.1071 0.0000 4 16 3.9496 0.7177 -0.0007 5 6 3.6432 -0.9591 0.0042 6 17 4.8716 -2.1858 0.0111 7 6 2.3034 -1.2058 -0.0006 8 6 1.7276 -2.5587 -0.0003 9 8 1.4886 -3.1183 -1.0537 10 7 1.4645 -3.1788 1.1671 11 6 0.8902 -4.5266 1.1674 12 6 0.6922 -4.9963 2.6100 13 1 0.5005 -4.2079 3.3379 14 6 1.5061 -6.2460 3.1042 15 1 2.2402 -6.7327 2.4620 16 6 1.6449 -6.4714 4.6252 17 7 0.4298 -7.2300 5.0033 18 6 0.3294 -8.2663 5.8927 19 1 -0.5499 -8.8934 5.8941 20 6 1.3578 -8.5109 6.7925 21 7 2.3437 -7.6477 6.9156 22 14 1.3425 -10.0653 7.8284 23 1 1.3545 -11.2537 6.9381 24 1 2.5423 -10.0891 8.7030 25 1 0.1179 -10.0883 8.6682 26 6 -0.6519 -6.6130 4.2008 27 6 -0.0083 -6.3394 2.8244 28 1 -0.4016 -6.8835 1.9656 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8361 2.1094 0.0009 33 1 1.6553 -2.7328 2.0069 34 1 1.5662 -5.2097 0.6529 35 1 -0.0714 -4.5120 0.6544 36 1 1.6753 -5.5164 5.1497 37 1 2.5400 -7.0533 4.8448 38 1 3.0621 -7.8184 7.5446 39 1 -0.9802 -5.6801 4.6590 40 1 -1.4897 -7.3027 4.0984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979004004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:14 Heat of formation + Delta-G solvation = 46.737474 kcal Electronic energy + Delta-G solvation = -23914.397454 eV Core-core repulsion = 20269.424637 eV Total energy + Delta-G solvation = -3644.972818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.17008 -38.67888 -37.68368 -36.98577 -34.97526 -33.28452 -31.39955 -30.76129 -28.49158 -27.32475 -27.05935 -25.18495 -23.90923 -21.37770 -21.13468 -20.20238 -19.26567 -19.02471 -18.41076 -17.19906 -16.81707 -16.22933 -15.48082 -14.82732 -14.75392 -14.45888 -14.26767 -14.12398 -13.86712 -13.49898 -13.39375 -13.22944 -12.96731 -12.69929 -12.65193 -12.38400 -11.81010 -11.63917 -11.54526 -11.27224 -11.21262 -11.09510 -10.82912 -10.72913 -10.28893 -10.18377 -10.17253 -9.74620 -9.41558 -9.16917 -9.12277 -8.94287 -8.77962 -8.62215 -6.87938 -5.80990 -3.15272 0.33591 0.67636 1.33736 1.77047 1.82655 2.42159 3.12941 3.37846 3.42589 3.43722 4.05526 4.37332 4.44591 4.56876 4.74243 4.87338 5.04010 5.17597 5.27789 5.29044 5.35920 5.41733 5.42958 5.51987 5.73941 5.75881 5.84086 5.89183 5.93395 5.94233 6.25544 6.30208 6.53997 6.64666 6.69633 6.91187 7.34599 7.37685 7.52019 7.70492 8.04156 8.19854 9.09835 9.72666 10.49806 11.33236 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.632941 B =12094.500626 C =12709.562873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.061 4.061 3 C -0.230 4.230 4 S 0.222 5.778 5 C -0.150 4.150 6 Cl 0.005 6.995 7 C -0.132 4.132 8 C 0.582 3.418 9 O -0.528 6.528 10 N -0.709 5.709 11 C 0.156 3.844 12 C -0.153 4.153 13 H 0.104 0.896 14 C -0.167 4.167 15 H 0.104 0.896 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.153 3.847 27 C -0.161 4.161 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.177 0.823 33 H 0.405 0.595 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.024 0.976 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 20.337 -14.783 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.073 4.073 3 C -0.365 4.365 4 S 0.489 5.511 5 C -0.295 4.295 6 Cl 0.034 6.966 7 C -0.152 4.152 8 C 0.365 3.635 9 O -0.404 6.404 10 N -0.360 5.360 11 C 0.033 3.967 12 C -0.172 4.172 13 H 0.122 0.878 14 C -0.187 4.187 15 H 0.122 0.878 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.026 3.974 27 C -0.181 4.181 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.194 0.806 33 H 0.239 0.761 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.543 20.515 -15.295 25.715 hybrid contribution -0.928 -1.601 0.902 2.059 sum 1.615 18.914 -14.392 23.822 Atomic orbital electron populations 1.20563 0.88385 1.03643 1.03178 1.19658 0.97296 0.89355 1.00972 1.25363 0.96098 1.02917 1.12126 1.83157 1.05139 0.92587 1.70257 1.25123 0.93483 0.98214 1.12717 1.98422 1.50433 1.51035 1.96723 1.20179 0.91206 0.95330 1.08503 1.17390 0.77840 0.84075 0.84240 1.90841 1.52238 1.66128 1.31237 1.46002 1.63803 1.17951 1.08261 1.20874 0.98405 0.81840 0.95585 1.23114 1.06588 0.92379 0.95139 0.87825 1.25012 0.94326 0.98528 1.00865 0.87817 1.21074 0.92761 0.95114 0.85325 1.45201 1.02034 1.37369 1.47177 1.18954 1.04226 1.03576 1.08877 0.90627 1.24894 0.98333 0.98784 0.98228 1.69882 1.12785 1.34843 1.38688 0.86192 0.77021 0.82703 0.79802 1.21065 1.21535 1.20977 1.21172 0.91949 0.95967 0.88289 1.23836 0.97030 0.97164 1.00077 0.87938 0.90231 0.90589 0.90871 0.80592 0.76067 0.91179 0.90977 0.95993 0.89229 0.93510 0.95800 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.96 36.00 0.36 -0.37 16 2 C -0.06 -0.55 6.01 -104.05 -0.62 -1.18 16 3 C -0.23 -1.61 10.90 28.84 0.31 -1.29 16 4 S 0.22 1.68 23.02 -107.50 -2.47 -0.79 16 5 C -0.15 -1.61 6.87 30.01 0.21 -1.40 16 6 Cl 0.01 0.06 28.80 -51.86 -1.49 -1.43 16 7 C -0.13 -1.52 5.73 -104.58 -0.60 -2.12 16 8 C 0.58 7.93 6.28 -12.69 -0.08 7.85 16 9 O -0.53 -9.05 17.11 5.23 0.09 -8.96 16 10 N -0.71 -8.74 5.55 -61.50 -0.34 -9.08 16 11 C 0.16 2.09 5.98 -4.04 -0.02 2.07 16 12 C -0.15 -2.30 5.54 -88.39 -0.49 -2.79 16 13 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 14 C -0.17 -3.13 7.00 -86.99 -0.61 -3.74 16 15 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 16 C 0.18 4.34 5.73 -2.41 -0.01 4.33 16 17 N -0.59 -15.14 3.38 -168.86 -0.57 -15.72 16 18 C -0.23 -6.34 10.35 -15.06 -0.16 -6.50 16 19 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.69 10.86 55.49 0.60 -26.08 16 22 Si 0.91 21.87 29.56 -169.99 -5.03 16.85 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.15 3.15 7.03 -2.41 -0.02 3.14 16 27 C -0.16 -2.79 6.71 -89.22 -0.60 -3.39 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.40 4.33 8.38 -40.82 -0.34 3.99 16 34 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -32.28 367.07 -11.37 -43.65 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.26 Total: 1.67 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.43 Total: -5.64 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.31 Total: -50.88 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.49 Total: -1.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.28 -11.37 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979004004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.391 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds