Wall clock time and date at job start Sat Apr 11 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32689 * 123.45356 * 2 1 4 4 S 1.75494 * 110.63403 * 180.02562 * 3 2 1 5 5 C 1.70450 * 92.46329 * 359.82249 * 4 3 2 6 6 Cl 1.73603 * 124.60512 * 180.19021 * 5 4 3 7 7 C 1.36228 * 110.78919 * 0.31326 * 5 4 3 8 8 C 1.47040 * 123.48929 * 179.89371 * 7 5 4 9 9 O 1.21656 * 120.00055 * 269.70611 * 8 7 5 10 10 N 1.34778 * 119.99956 * 89.70920 * 8 7 5 11 11 C 1.46499 * 119.99801 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47156 * 179.97438 * 11 10 8 13 13 H 1.09005 * 115.49029 * 29.62107 * 12 11 10 14 14 C 1.57116 * 118.27542 * 243.46951 * 12 11 10 15 15 H 1.09000 * 121.24402 * 3.76926 * 14 12 11 16 16 C 1.54384 * 118.20333 * 162.01505 * 14 12 11 17 17 N 1.48152 * 104.62094 * 86.19484 * 16 14 12 18 18 C 1.36932 * 127.83984 * 140.41307 * 17 16 14 19 19 H 1.07997 * 120.00056 * 195.62204 * 18 17 16 20 20 C 1.38817 * 119.99827 * 15.62261 * 18 17 16 21 21 N 1.31614 * 120.00197 * 9.10103 * 20 18 17 22 22 Si 1.86804 * 119.99863 * 189.11079 * 20 18 17 23 23 H 1.48491 * 109.47430 * 59.99369 * 22 20 18 24 24 H 1.48498 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46745 * 299.99440 * 22 20 18 26 26 C 1.48150 * 104.32237 * 320.41592 * 17 16 14 27 27 C 1.52991 * 117.44573 * 175.00283 * 12 11 10 28 28 H 1.09006 * 119.53720 * 355.88164 * 27 12 11 29 29 H 1.09006 * 109.47363 * 269.97729 * 1 2 3 30 30 H 1.08997 * 109.47431 * 29.97140 * 1 2 3 31 31 H 1.09004 * 109.47407 * 149.97724 * 1 2 3 32 32 H 1.08005 * 124.67929 * 0.05901 * 3 2 1 33 33 H 0.96992 * 120.00078 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47424 * 60.00441 * 11 10 8 35 35 H 1.08997 * 109.47875 * 299.99979 * 11 10 8 36 36 H 1.09002 * 110.40883 * 327.41470 * 16 14 12 37 37 H 1.08992 * 110.50938 * 205.03157 * 16 14 12 38 38 H 0.96999 * 120.00326 * 179.97438 * 21 20 18 39 39 H 1.08997 * 110.40934 * 280.80147 * 26 17 16 40 40 H 1.08999 * 110.40302 * 158.36621 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2384 1.1071 0.0000 4 16 3.9496 0.7177 -0.0007 5 6 3.6432 -0.9591 0.0042 6 17 4.8716 -2.1858 0.0111 7 6 2.3034 -1.2058 -0.0006 8 6 1.7276 -2.5587 -0.0003 9 8 1.4886 -3.1183 -1.0537 10 7 1.4645 -3.1788 1.1671 11 6 0.8902 -4.5266 1.1674 12 6 0.6922 -4.9963 2.6100 13 1 0.5005 -4.2079 3.3379 14 6 1.5061 -6.2460 3.1042 15 1 2.2402 -6.7327 2.4620 16 6 1.6449 -6.4714 4.6252 17 7 0.4298 -7.2300 5.0033 18 6 0.3294 -8.2663 5.8927 19 1 -0.5499 -8.8934 5.8941 20 6 1.3578 -8.5109 6.7925 21 7 2.3437 -7.6477 6.9156 22 14 1.3425 -10.0653 7.8284 23 1 1.3545 -11.2537 6.9381 24 1 2.5423 -10.0891 8.7030 25 1 0.1179 -10.0883 8.6682 26 6 -0.6519 -6.6130 4.2008 27 6 -0.0083 -6.3394 2.8244 28 1 -0.4016 -6.8835 1.9656 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8361 2.1094 0.0009 33 1 1.6553 -2.7328 2.0069 34 1 1.5662 -5.2097 0.6529 35 1 -0.0714 -4.5120 0.6544 36 1 1.6753 -5.5164 5.1497 37 1 2.5400 -7.0533 4.8448 38 1 3.0621 -7.8184 7.5446 39 1 -0.9802 -5.6801 4.6590 40 1 -1.4897 -7.3027 4.0984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979004004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:13 Heat of formation + Delta-G solvation = 27.403114 kcal Electronic energy + Delta-G solvation = -23915.235855 eV Core-core repulsion = 20269.424637 eV Total energy + Delta-G solvation = -3645.811218 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18890 -40.17894 -38.54783 -37.77084 -36.34575 -34.97988 -32.73308 -31.96604 -29.49301 -28.89010 -28.35938 -26.76789 -24.92681 -22.89019 -22.18827 -21.58400 -20.79471 -20.03921 -19.07626 -18.84541 -18.08045 -17.35224 -16.85225 -16.38596 -16.04991 -15.55579 -15.36045 -15.05988 -14.94841 -14.69534 -14.57395 -14.30113 -14.29884 -13.88161 -13.79560 -13.33404 -13.18260 -13.00559 -12.89532 -12.69600 -12.40359 -12.33369 -12.20136 -12.01173 -11.98490 -11.94082 -11.75110 -11.30492 -10.90579 -10.71965 -10.55823 -10.10825 -9.82928 -9.40449 -8.91126 -7.92319 -5.28486 -0.37943 0.00475 0.65832 1.05760 1.13771 1.41208 1.45469 1.48778 1.55210 2.10533 2.47651 2.64713 3.25736 3.54203 3.63423 3.72012 3.82755 3.84457 4.09238 4.19485 4.24192 4.43434 4.45200 4.54609 4.56205 4.65997 4.67588 4.78548 4.85766 4.92309 5.02204 5.13572 5.19110 5.32990 5.34661 5.37511 5.44593 5.53077 5.66066 6.17445 6.36328 7.00530 7.02244 7.67923 8.46312 9.21164 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.632941 B =12094.500626 C =12709.562873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.080 4.080 3 C -0.212 4.212 4 S 0.269 5.731 5 C -0.174 4.174 6 Cl -0.013 7.013 7 C -0.152 4.152 8 C 0.586 3.414 9 O -0.569 6.569 10 N -0.702 5.702 11 C 0.164 3.836 12 C -0.109 4.109 13 H 0.112 0.888 14 C -0.184 4.184 15 H 0.109 0.891 16 C 0.190 3.810 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.980 3.020 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.274 1.274 26 C 0.147 3.853 27 C -0.151 4.151 28 H 0.126 0.874 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.212 0.788 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.002 0.998 37 H 0.051 0.949 38 H 0.250 0.750 39 H 0.028 0.972 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 22.263 -15.674 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.348 4.348 4 S 0.536 5.464 5 C -0.320 4.320 6 Cl 0.016 6.984 7 C -0.172 4.172 8 C 0.370 3.630 9 O -0.448 6.448 10 N -0.353 5.353 11 C 0.040 3.960 12 C -0.128 4.128 13 H 0.130 0.870 14 C -0.203 4.203 15 H 0.127 0.873 16 C 0.064 3.936 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.022 3.978 27 C -0.171 4.171 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.229 0.771 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.020 0.980 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.481 22.466 -16.186 27.729 hybrid contribution -0.620 -2.084 1.166 2.468 sum 0.861 20.382 -15.020 25.333 Atomic orbital electron populations 1.20587 0.87425 1.03703 1.03791 1.19789 0.98060 0.88842 1.02376 1.25810 0.95610 1.03936 1.09419 1.83037 1.05305 0.89583 1.68491 1.25415 0.93082 0.99674 1.13795 1.98410 1.50997 1.52154 1.96877 1.20214 0.91854 0.94973 1.10196 1.17695 0.76934 0.84749 0.83616 1.90812 1.54091 1.67362 1.32575 1.45925 1.63297 1.17462 1.08632 1.20734 0.98952 0.82276 0.93993 1.23014 1.02443 0.91194 0.96114 0.87013 1.24699 0.95631 1.02531 0.97478 0.87317 1.20793 0.91046 0.93196 0.88562 1.45523 1.04022 1.37440 1.47505 1.19353 1.04317 1.04336 1.09161 0.90175 1.25739 0.98204 1.01834 0.99844 1.70082 1.13353 1.36591 1.39420 0.85144 0.76945 0.79058 0.78128 1.20421 1.21955 1.19930 1.21329 0.91302 0.95945 0.89225 1.23777 0.95152 0.99059 0.99078 0.85668 0.89339 0.88335 0.92993 0.77087 0.75003 0.91925 0.89761 0.97996 0.93095 0.94140 0.95414 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.96 71.23 0.71 -0.49 16 2 C -0.08 -1.25 6.01 -19.44 -0.12 -1.37 16 3 C -0.21 -2.23 10.90 66.65 0.73 -1.50 16 4 S 0.27 3.40 23.02 -56.49 -1.30 2.10 16 5 C -0.17 -3.55 6.87 67.35 0.46 -3.09 16 6 Cl -0.01 -0.30 28.80 -2.72 -0.08 -0.38 16 7 C -0.15 -3.31 5.73 -19.84 -0.11 -3.42 16 8 C 0.59 15.59 6.28 86.55 0.54 16.13 16 9 O -0.57 -19.45 17.11 -4.21 -0.07 -19.52 16 10 N -0.70 -16.48 5.55 -466.72 -2.59 -19.07 16 11 C 0.16 4.12 5.98 86.38 0.52 4.63 16 12 C -0.11 -3.08 5.54 -9.35 -0.05 -3.13 16 13 H 0.11 3.08 8.04 -2.38 -0.02 3.06 16 14 C -0.18 -6.83 7.00 -8.44 -0.06 -6.89 16 15 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 16 C 0.19 9.30 5.73 86.53 0.50 9.80 16 17 N -0.62 -32.11 3.38 -688.14 -2.33 -34.43 16 18 C -0.24 -13.69 10.35 84.04 0.87 -12.82 16 19 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 20 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 21 N -0.95 -57.06 10.86 21.65 0.24 -56.83 16 22 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 C 0.15 5.97 7.03 86.53 0.61 6.57 16 27 C -0.15 -4.98 6.71 -9.89 -0.07 -5.05 16 28 H 0.13 3.64 8.14 -2.38 -0.02 3.62 16 29 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.05 0.87 7.69 -2.39 -0.02 0.86 16 32 H 0.21 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.41 8.27 8.38 -92.71 -0.78 7.49 16 34 H 0.06 1.74 8.00 -2.38 -0.02 1.72 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.05 2.86 6.51 -2.39 -0.02 2.85 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -72.45 367.07 1.18 -71.27 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.30 Total: 12.95 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.98 Total: -3.74 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.68 Total: -110.34 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.07 Total: -19.52 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.30 Total: 2.10 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -72.45 1.18 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979004004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.677 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds