Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46764 * 264.99691 * 3 2 1 5 5 H 1.48495 * 109.46960 * 24.99486 * 3 2 1 6 6 H 1.48498 * 109.46857 * 145.00123 * 3 2 1 7 7 C 1.38816 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 186.06523 * 7 2 1 9 9 N 1.36931 * 119.99626 * 6.06860 * 7 2 1 10 10 C 1.46905 * 120.68742 * 213.77245 * 9 7 2 11 11 C 1.52672 * 109.34586 * 235.30831 * 10 9 7 12 12 C 1.53186 * 109.42630 * 303.77129 * 11 10 9 13 13 C 1.52628 * 109.35789 * 58.92832 * 12 11 10 14 14 C 1.53456 * 113.68300 * 74.05353 * 13 12 11 15 15 N 1.47671 * 85.96972 * 91.17943 * 14 13 12 16 16 C 1.34769 * 134.45975 * 204.28371 * 15 14 13 17 17 O 1.21655 * 119.99858 * 355.85975 * 16 15 14 18 18 C 1.47047 * 120.00420 * 175.85162 * 16 15 14 19 19 C 1.44504 * 123.49091 * 6.98243 * 18 16 15 20 20 C 1.32684 * 113.10168 * 179.97438 * 19 18 16 21 21 S 1.75500 * 110.62977 * 0.02562 * 20 19 18 22 22 C 1.36222 * 123.49372 * 186.68772 * 18 16 15 23 23 Cl 1.73602 * 124.60374 * 0.02562 * 22 18 16 24 24 C 1.47677 * 91.09031 * 24.28690 * 15 14 13 25 25 C 1.47114 * 120.69615 * 34.04779 * 9 7 2 26 26 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.53762 * 355.23842 * 10 9 7 28 28 H 1.08998 * 109.53265 * 115.47288 * 10 9 7 29 29 H 1.08997 * 109.55832 * 183.72042 * 11 10 9 30 30 H 1.08996 * 109.34280 * 63.68674 * 11 10 9 31 31 H 1.08999 * 109.48910 * 298.95894 * 12 11 10 32 32 H 1.09005 * 109.48711 * 178.89416 * 12 11 10 33 33 H 1.09000 * 113.79527 * 205.44186 * 14 13 12 34 34 H 1.08999 * 113.79880 * 336.91511 * 14 13 12 35 35 H 1.08004 * 123.45118 * 0.02562 * 19 18 16 36 36 H 1.08001 * 124.68832 * 179.97438 * 20 19 18 37 37 H 1.08995 * 113.79514 * 221.45247 * 24 15 14 38 38 H 1.09000 * 113.89838 * 89.98845 * 24 15 14 39 39 H 1.09003 * 109.64097 * 248.31444 * 25 9 7 40 40 H 1.09004 * 109.63386 * 8.92245 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6034 1.9853 -1.3948 5 1 1.3988 2.6809 0.5916 6 1 3.4909 1.4729 0.8030 7 6 2.0103 -1.2022 0.0005 8 1 3.0857 -1.2047 0.0994 9 7 1.3313 -2.3847 -0.1243 10 6 1.8022 -3.5956 0.5614 11 6 1.9943 -4.7133 -0.4606 12 6 0.6839 -4.9391 -1.2212 13 6 0.2740 -3.6446 -1.9182 14 6 1.1216 -3.3151 -3.1543 15 7 0.1072 -4.0657 -3.9212 16 6 0.1083 -4.7213 -5.0987 17 8 1.1008 -4.7065 -5.8021 18 6 -1.0899 -5.4547 -5.5331 19 6 -2.3530 -5.4044 -4.8331 20 6 -3.2948 -6.1438 -5.4047 21 16 -2.6699 -6.9416 -6.8376 22 6 -1.1258 -6.2473 -6.6404 23 17 0.2196 -6.5170 -7.7038 24 6 -0.9093 -3.8100 -2.8809 25 6 0.1186 -2.4706 -0.9527 26 1 -0.4850 0.8401 -0.0004 27 1 2.7514 -3.3888 1.0557 28 1 1.0644 -3.9054 1.3016 29 1 2.2800 -5.6316 0.0523 30 1 2.7781 -4.4295 -1.1629 31 1 -0.0961 -5.2378 -0.5209 32 1 0.8255 -5.7235 -1.9647 33 1 1.1560 -2.2522 -3.3933 34 1 2.1057 -3.7838 -3.1505 35 1 -2.5143 -4.8237 -3.9368 36 1 -4.3061 -6.2420 -5.0384 37 1 -1.5388 -4.6719 -2.6598 38 1 -1.4804 -2.8948 -3.0370 39 1 -0.7501 -2.6335 -0.3148 40 1 -0.0057 -1.5463 -1.5170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982051552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 58.395115 kcal Electronic energy + Delta-G solvation = -25350.975502 eV Core-core repulsion = 21706.508197 eV Total energy + Delta-G solvation = -3644.467304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.58359 -38.65280 -37.03275 -36.51364 -35.76306 -32.87290 -30.46449 -30.02737 -29.66995 -26.85107 -25.91780 -25.38195 -23.91486 -22.27158 -21.45136 -20.39042 -19.11692 -18.20173 -17.80944 -16.84557 -16.26051 -15.98836 -15.62459 -14.68881 -14.40886 -14.14932 -14.07699 -13.98496 -13.65339 -13.42933 -13.22075 -13.14712 -12.80356 -12.62112 -12.31414 -11.78517 -11.74081 -11.63265 -11.47629 -11.14091 -11.05097 -10.90939 -10.81446 -10.51164 -10.27586 -10.11374 -9.95186 -9.78538 -9.55110 -9.33203 -9.06302 -8.80355 -8.53262 -8.32384 -6.61750 -5.84508 -3.33943 0.39874 0.79590 1.46760 1.78720 2.04304 3.10722 3.35409 3.40763 3.42326 3.43201 4.43787 4.45475 4.73366 4.80947 4.85066 5.18865 5.33738 5.39241 5.40045 5.53074 5.57528 5.67486 5.75774 5.82120 5.87696 5.90782 6.05592 6.07344 6.18015 6.27411 6.39134 6.51694 6.61902 6.74216 6.84801 6.98448 7.22529 7.54310 7.76058 7.96194 8.35665 8.43881 9.18174 9.77899 10.38029 11.24178 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002974 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.423781 B = 9412.602476 C = 9487.993630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.082 4.082 13 C -0.112 4.112 14 C 0.135 3.865 15 N -0.632 5.632 16 C 0.588 3.412 17 O -0.532 6.532 18 C -0.139 4.139 19 C -0.108 4.108 20 C -0.227 4.227 21 S 0.210 5.790 22 C -0.127 4.127 23 Cl 0.017 6.983 24 C 0.100 3.900 25 C 0.193 3.807 26 H 0.255 0.745 27 H 0.053 0.947 28 H 0.018 0.982 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 -14.273 -10.029 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.174 4.174 12 C -0.120 4.120 13 C -0.115 4.115 14 C 0.013 3.987 15 N -0.366 5.366 16 C 0.376 3.624 17 O -0.411 6.411 18 C -0.158 4.158 19 C -0.137 4.137 20 C -0.362 4.362 21 S 0.474 5.526 22 C -0.274 4.274 23 Cl 0.045 6.955 24 C -0.023 4.023 25 C 0.066 3.934 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.184 0.816 36 H 0.194 0.806 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.516 -15.202 -11.717 20.997 hybrid contribution 1.049 1.859 0.890 2.312 sum -7.466 -13.343 -10.827 18.735 Atomic orbital electron populations 1.69914 1.05226 1.25579 1.54284 1.25215 0.95455 0.98299 0.99999 0.86309 0.79070 0.83507 0.77864 1.21311 1.21637 1.20452 1.19138 0.90227 0.83347 1.45532 0.91900 1.43931 1.29318 1.05550 1.52422 1.20805 0.97634 0.87182 0.92453 1.21947 0.96948 0.99019 0.99485 1.21089 0.97960 0.94783 0.98167 1.22873 0.93659 0.99594 0.95333 1.23188 0.93158 0.96309 0.86006 1.50045 1.16263 1.51857 1.18437 1.17042 0.86405 0.79346 0.79609 1.90832 1.34510 1.63202 1.52509 1.20379 0.96289 1.02713 0.96449 1.21670 0.90336 1.00407 1.01282 1.25553 1.04539 1.05203 1.00877 1.83109 0.97960 1.45823 1.25757 1.25238 0.97640 1.05731 0.98772 1.98407 1.41244 1.94603 1.61201 1.23533 0.93488 1.00703 0.84562 1.20693 0.88716 0.93490 0.90476 0.93533 0.92864 0.96441 0.92996 0.92377 0.92124 0.93359 0.89369 0.90626 0.81628 0.80608 0.90236 0.89029 0.95615 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.64 11.05 55.49 0.61 -24.02 16 2 C 0.01 0.24 5.14 -17.43 -0.09 0.15 16 3 Si 0.90 20.99 29.56 -169.99 -5.02 15.96 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.55 9.56 -15.06 -0.14 -6.70 16 8 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 9 N -0.59 -13.68 2.99 -172.74 -0.52 -14.19 16 10 C 0.15 2.87 6.43 -3.99 -0.03 2.85 16 11 C -0.13 -2.24 5.99 -26.80 -0.16 -2.40 16 12 C -0.08 -1.29 5.02 -26.83 -0.13 -1.42 16 13 C -0.11 -1.88 0.87 -154.44 -0.13 -2.01 16 14 C 0.13 2.39 7.81 -3.17 -0.02 2.37 16 15 N -0.63 -10.24 3.45 -181.88 -0.63 -10.87 16 16 C 0.59 10.12 8.00 -12.69 -0.10 10.01 16 17 O -0.53 -10.75 15.67 5.23 0.08 -10.67 16 18 C -0.14 -1.96 5.98 -104.58 -0.63 -2.58 16 19 C -0.11 -1.17 9.43 -39.00 -0.37 -1.54 16 20 C -0.23 -1.91 11.11 28.84 0.32 -1.59 16 21 S 0.21 1.88 23.02 -107.50 -2.47 -0.60 16 22 C -0.13 -1.64 6.87 30.01 0.21 -1.44 16 23 Cl 0.02 0.23 27.22 -51.86 -1.41 -1.19 16 24 C 0.10 1.40 6.02 -3.18 -0.02 1.38 16 25 C 0.19 4.07 4.34 -3.81 -0.02 4.05 16 26 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.02 7.37 -51.93 -0.38 0.64 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 33 H 0.09 1.67 7.97 -51.93 -0.41 1.26 16 34 H 0.08 1.40 7.37 -51.93 -0.38 1.01 16 35 H 0.17 1.59 4.64 -52.48 -0.24 1.35 16 36 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.08 0.92 6.09 -51.93 -0.32 0.60 16 38 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.14 6.15 -51.93 -0.32 1.82 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -30.02 347.28 -10.41 -40.43 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.97 Total: -1.23 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.14 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.53 Total: -49.09 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.60 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.41 Total: -1.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.02 -10.41 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982051552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.827 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds