Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46764 * 264.99691 * 3 2 1 5 5 H 1.48495 * 109.46960 * 24.99486 * 3 2 1 6 6 H 1.48498 * 109.46857 * 145.00123 * 3 2 1 7 7 C 1.38816 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 186.06523 * 7 2 1 9 9 N 1.36931 * 119.99626 * 6.06860 * 7 2 1 10 10 C 1.46905 * 120.68742 * 213.77245 * 9 7 2 11 11 C 1.52672 * 109.34586 * 235.30831 * 10 9 7 12 12 C 1.53186 * 109.42630 * 303.77129 * 11 10 9 13 13 C 1.52628 * 109.35789 * 58.92832 * 12 11 10 14 14 C 1.53456 * 113.68300 * 74.05353 * 13 12 11 15 15 N 1.47671 * 85.96972 * 91.17943 * 14 13 12 16 16 C 1.34769 * 134.45975 * 204.28371 * 15 14 13 17 17 O 1.21655 * 119.99858 * 355.85975 * 16 15 14 18 18 C 1.47047 * 120.00420 * 175.85162 * 16 15 14 19 19 C 1.44504 * 123.49091 * 6.98243 * 18 16 15 20 20 C 1.32684 * 113.10168 * 179.97438 * 19 18 16 21 21 S 1.75500 * 110.62977 * 0.02562 * 20 19 18 22 22 C 1.36222 * 123.49372 * 186.68772 * 18 16 15 23 23 Cl 1.73602 * 124.60374 * 0.02562 * 22 18 16 24 24 C 1.47677 * 91.09031 * 24.28690 * 15 14 13 25 25 C 1.47114 * 120.69615 * 34.04779 * 9 7 2 26 26 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.53762 * 355.23842 * 10 9 7 28 28 H 1.08998 * 109.53265 * 115.47288 * 10 9 7 29 29 H 1.08997 * 109.55832 * 183.72042 * 11 10 9 30 30 H 1.08996 * 109.34280 * 63.68674 * 11 10 9 31 31 H 1.08999 * 109.48910 * 298.95894 * 12 11 10 32 32 H 1.09005 * 109.48711 * 178.89416 * 12 11 10 33 33 H 1.09000 * 113.79527 * 205.44186 * 14 13 12 34 34 H 1.08999 * 113.79880 * 336.91511 * 14 13 12 35 35 H 1.08004 * 123.45118 * 0.02562 * 19 18 16 36 36 H 1.08001 * 124.68832 * 179.97438 * 20 19 18 37 37 H 1.08995 * 113.79514 * 221.45247 * 24 15 14 38 38 H 1.09000 * 113.89838 * 89.98845 * 24 15 14 39 39 H 1.09003 * 109.64097 * 248.31444 * 25 9 7 40 40 H 1.09004 * 109.63386 * 8.92245 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6034 1.9853 -1.3948 5 1 1.3988 2.6809 0.5916 6 1 3.4909 1.4729 0.8030 7 6 2.0103 -1.2022 0.0005 8 1 3.0857 -1.2047 0.0994 9 7 1.3313 -2.3847 -0.1243 10 6 1.8022 -3.5956 0.5614 11 6 1.9943 -4.7133 -0.4606 12 6 0.6839 -4.9391 -1.2212 13 6 0.2740 -3.6446 -1.9182 14 6 1.1216 -3.3151 -3.1543 15 7 0.1072 -4.0657 -3.9212 16 6 0.1083 -4.7213 -5.0987 17 8 1.1008 -4.7065 -5.8021 18 6 -1.0899 -5.4547 -5.5331 19 6 -2.3530 -5.4044 -4.8331 20 6 -3.2948 -6.1438 -5.4047 21 16 -2.6699 -6.9416 -6.8376 22 6 -1.1258 -6.2473 -6.6404 23 17 0.2196 -6.5170 -7.7038 24 6 -0.9093 -3.8100 -2.8809 25 6 0.1186 -2.4706 -0.9527 26 1 -0.4850 0.8401 -0.0004 27 1 2.7514 -3.3888 1.0557 28 1 1.0644 -3.9054 1.3016 29 1 2.2800 -5.6316 0.0523 30 1 2.7781 -4.4295 -1.1629 31 1 -0.0961 -5.2378 -0.5209 32 1 0.8255 -5.7235 -1.9647 33 1 1.1560 -2.2522 -3.3933 34 1 2.1057 -3.7838 -3.1505 35 1 -2.5143 -4.8237 -3.9368 36 1 -4.3061 -6.2420 -5.0384 37 1 -1.5388 -4.6719 -2.6598 38 1 -1.4804 -2.8948 -3.0370 39 1 -0.7501 -2.6335 -0.3148 40 1 -0.0057 -1.5463 -1.5170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982051552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 41.544105 kcal Electronic energy + Delta-G solvation = -25351.706216 eV Core-core repulsion = 21706.508197 eV Total energy + Delta-G solvation = -3645.198019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90215 -39.88789 -38.11619 -37.47051 -37.32528 -34.61764 -31.99755 -31.64784 -30.57406 -28.16614 -27.29018 -27.14342 -24.98354 -23.92704 -22.61916 -21.70737 -20.18894 -19.41372 -19.05260 -18.57486 -17.39070 -17.26751 -17.02911 -16.46688 -15.71958 -15.50444 -15.23240 -15.19197 -14.92809 -14.63005 -14.49734 -14.34959 -14.08743 -14.02912 -13.80373 -13.35861 -13.13499 -12.78308 -12.71129 -12.62947 -12.57499 -12.28169 -12.08274 -12.05301 -11.92943 -11.71715 -11.47620 -11.27248 -11.05333 -10.72175 -10.50367 -9.96400 -9.71738 -9.47222 -8.50440 -7.83538 -5.34495 -0.51211 -0.00752 0.67744 0.91588 1.16524 1.47933 1.49989 1.56671 1.85268 2.20954 2.52527 3.28136 3.41589 3.44965 3.86419 3.89811 3.95179 4.01251 4.15362 4.34245 4.40282 4.40963 4.51867 4.59871 4.65918 4.69093 4.82017 4.89775 4.97018 5.03139 5.06534 5.12344 5.19057 5.30083 5.32997 5.47430 5.59363 5.70165 5.79659 6.47877 6.68859 7.06026 7.22994 7.91039 8.44594 9.21841 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002974 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.423781 B = 9412.602476 C = 9487.993630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.036 4.036 3 Si 0.957 3.043 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.261 4.261 8 H 0.057 0.943 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.126 4.126 12 C -0.076 4.076 13 C -0.104 4.104 14 C 0.130 3.870 15 N -0.629 5.629 16 C 0.581 3.419 17 O -0.575 6.575 18 C -0.163 4.163 19 C -0.124 4.124 20 C -0.206 4.206 21 S 0.278 5.722 22 C -0.154 4.154 23 Cl -0.004 7.004 24 C 0.113 3.887 25 C 0.205 3.795 26 H 0.250 0.750 27 H 0.046 0.954 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.177 0.823 36 H 0.217 0.783 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.013 0.987 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -16.348 -10.114 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.786 3.214 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.392 4.392 8 H 0.074 0.926 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.165 4.165 12 C -0.113 4.113 13 C -0.106 4.106 14 C 0.008 3.992 15 N -0.363 5.363 16 C 0.371 3.629 17 O -0.456 6.456 18 C -0.183 4.183 19 C -0.152 4.152 20 C -0.341 4.341 21 S 0.542 5.458 22 C -0.301 4.301 23 Cl 0.025 6.975 24 C -0.009 4.009 25 C 0.079 3.921 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.194 0.806 36 H 0.233 0.767 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.813 -17.307 -11.791 23.568 hybrid contribution 1.719 2.444 0.894 3.118 sum -9.095 -14.863 -10.897 20.551 Atomic orbital electron populations 1.70044 1.06128 1.25696 1.55484 1.25790 0.96181 1.00759 1.00536 0.85447 0.78101 0.80315 0.77509 1.21526 1.21865 1.19887 1.19352 0.90306 0.84785 1.44709 0.92558 1.44190 1.29631 1.05881 1.53517 1.20918 0.97205 0.86869 0.93256 1.21835 0.97231 0.98881 0.98536 1.21067 0.97826 0.93975 0.98462 1.22676 0.95166 0.98600 0.94199 1.23010 0.93384 0.95289 0.87524 1.50010 1.16228 1.51331 1.18682 1.17622 0.87096 0.79060 0.79110 1.90797 1.36391 1.64735 1.53697 1.20319 0.96330 1.03770 0.97906 1.21646 0.89371 1.02019 1.02126 1.26064 1.05603 1.02784 0.99646 1.82953 0.94329 1.43546 1.24934 1.25657 0.99106 1.06703 0.98595 1.98394 1.42770 1.94709 1.61663 1.23594 0.92577 1.02566 0.82123 1.20410 0.87543 0.93814 0.90339 0.94027 0.93509 0.96041 0.90008 0.93848 0.90316 0.92272 0.91578 0.91848 0.80630 0.76655 0.86550 0.88506 0.96925 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.63 11.05 21.65 0.24 -51.39 16 2 C -0.04 -1.95 5.14 84.86 0.44 -1.52 16 3 Si 0.96 44.01 29.56 68.60 2.03 46.03 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -13.85 9.56 84.04 0.80 -13.05 16 8 H 0.06 3.00 7.84 -2.91 -0.02 2.97 16 9 N -0.61 -28.68 2.99 -700.44 -2.10 -30.78 16 10 C 0.14 5.57 6.43 86.19 0.55 6.13 16 11 C -0.13 -3.99 5.99 30.55 0.18 -3.81 16 12 C -0.08 -2.21 5.02 30.53 0.15 -2.06 16 13 C -0.10 -3.43 0.87 -52.04 -0.05 -3.48 16 14 C 0.13 4.77 7.81 86.30 0.67 5.44 16 15 N -0.63 -20.22 3.45 -847.58 -2.92 -23.15 16 16 C 0.58 19.98 8.00 86.55 0.69 20.67 16 17 O -0.57 -23.94 15.67 -4.21 -0.07 -24.01 16 18 C -0.16 -4.34 5.98 -19.84 -0.12 -4.46 16 19 C -0.12 -2.25 9.43 22.70 0.21 -2.04 16 20 C -0.21 -2.47 11.11 66.65 0.74 -1.73 16 21 S 0.28 3.97 23.02 -56.49 -1.30 2.67 16 22 C -0.15 -3.74 6.87 67.35 0.46 -3.28 16 23 Cl 0.00 -0.11 27.22 -2.72 -0.07 -0.19 16 24 C 0.11 2.98 6.02 86.30 0.52 3.50 16 25 C 0.21 8.79 4.34 86.19 0.37 9.16 16 26 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 27 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.50 7.37 -2.39 -0.02 1.49 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.65 8.02 -2.38 -0.02 1.63 16 33 H 0.07 2.68 7.97 -2.39 -0.02 2.66 16 34 H 0.06 2.44 7.37 -2.39 -0.02 2.43 16 35 H 0.18 2.69 4.64 -2.91 -0.01 2.68 16 36 H 0.22 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.12 2.25 6.09 -2.39 -0.01 2.24 16 38 H 0.10 2.48 8.09 -2.39 -0.02 2.46 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 2.81 6.15 -2.38 -0.01 2.79 16 Total: -1.00 -68.25 347.28 2.52 -65.73 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.07 Total: 5.59 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.64 Total: 9.49 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.78 Total: -105.32 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.07 Total: -24.01 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.30 Total: 2.67 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.07 Total: -0.19 kcal Total: -68.25 2.52 -65.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982051552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.271 kcal (2) G-P(sol) polarization free energy of solvation -68.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds