Wall clock time and date at job start Sat Apr 11 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46848 * 269.99330 * 3 2 1 5 5 H 1.48495 * 109.47285 * 29.99381 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99885 * 3 2 1 7 7 C 1.38814 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99993 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.05614 * 328.16401 * 10 9 7 12 12 C 1.54725 * 111.52974 * 207.33454 * 10 9 7 13 13 C 1.54107 * 106.75925 * 242.34016 * 12 10 9 14 14 C 1.54452 * 104.73533 * 335.69429 * 13 12 10 15 15 H 1.08993 * 113.73860 * 272.41302 * 14 13 12 16 16 C 1.54892 * 109.70717 * 143.79711 * 14 13 12 17 17 N 1.47350 * 105.01573 * 288.54196 * 16 14 13 18 18 C 1.34772 * 125.70595 * 155.08866 * 17 16 14 19 19 O 1.21654 * 119.99788 * 354.04418 * 18 17 16 20 20 C 1.47046 * 120.00310 * 173.77198 * 18 17 16 21 21 C 1.44500 * 123.49233 * 5.74941 * 20 18 17 22 22 C 1.32691 * 113.10218 * 179.83912 * 21 20 18 23 23 S 1.75495 * 110.62708 * 0.41340 * 22 21 20 24 24 C 1.36227 * 123.49089 * 186.04568 * 20 18 17 25 25 Cl 1.73603 * 124.60594 * 359.97438 * 24 20 18 26 26 C 1.47035 * 108.59337 * 334.82847 * 17 16 14 27 27 C 1.53909 * 109.91152 * 89.35728 * 10 9 7 28 28 H 1.09004 * 112.92105 * 265.08908 * 27 10 9 29 29 H 0.97000 * 120.00458 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00094 * 359.97438 * 9 7 2 31 31 H 1.09004 * 110.72454 * 122.59436 * 12 10 9 32 32 H 1.09000 * 109.25991 * 1.28382 * 12 10 9 33 33 H 1.08995 * 110.38569 * 216.87708 * 13 12 10 34 34 H 1.09008 * 110.47914 * 94.55758 * 13 12 10 35 35 H 1.09003 * 110.44654 * 169.62750 * 16 14 13 36 36 H 1.09001 * 110.28858 * 47.38184 * 16 14 13 37 37 H 1.08002 * 123.44956 * 0.03929 * 21 20 18 38 38 H 1.07997 * 124.68636 * 180.13732 * 22 21 20 39 39 H 1.09001 * 109.82831 * 122.04743 * 26 17 16 40 40 H 1.09002 * 109.82657 * 242.91718 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9984 -3.5456 -0.5396 12 6 1.2349 -4.7879 -0.6604 13 6 0.9907 -5.8530 0.4263 14 6 2.1406 -5.6529 1.4379 15 1 3.0430 -6.2127 1.1927 16 6 1.6218 -5.9063 2.8752 17 7 0.7559 -4.7530 3.1774 18 6 -0.2567 -4.7413 4.0667 19 8 -0.5905 -5.7710 4.6219 20 6 -0.9541 -3.4829 4.3704 21 6 -0.6988 -2.2419 3.6755 22 6 -1.4460 -1.2367 4.1135 23 16 -2.4957 -1.7682 5.4156 24 6 -1.9036 -3.3647 5.3401 25 17 -2.4377 -4.6637 6.3605 26 6 1.1853 -3.6151 2.3511 27 6 2.3344 -4.1026 1.4475 28 1 3.3169 -3.7956 1.8062 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 1.7817 -5.2255 -1.4956 32 1 0.2838 -4.3843 -1.0078 33 1 1.0344 -6.8528 -0.0054 34 1 0.0272 -5.6907 0.9097 35 1 2.4537 -5.9493 3.5782 36 1 1.0463 -6.8313 2.9117 37 1 0.0238 -2.1435 2.8788 38 1 -1.4097 -0.2294 3.7256 39 1 0.3536 -3.2692 1.7373 40 1 1.5346 -2.8046 2.9908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:25 Heat of formation + Delta-G solvation = 28.605740 kcal Electronic energy + Delta-G solvation = -25957.872182 eV Core-core repulsion = 22312.113114 eV Total energy + Delta-G solvation = -3645.759069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.51154 -38.59457 -36.89803 -36.26616 -34.95231 -33.37410 -31.07864 -29.59684 -28.99392 -28.61153 -25.71390 -24.79656 -23.56232 -22.79154 -20.56272 -19.67938 -19.13967 -18.85417 -17.91616 -17.52771 -16.18964 -15.81590 -15.47728 -14.95680 -14.75613 -14.20734 -13.85174 -13.70158 -13.58149 -13.22998 -13.20163 -13.02947 -12.89668 -12.52873 -12.23504 -11.92667 -11.50380 -11.42634 -11.18193 -11.01481 -10.85224 -10.81164 -10.72793 -10.57627 -10.37054 -10.23738 -10.15222 -9.94340 -9.72122 -9.53974 -9.00492 -8.71715 -8.45697 -8.21526 -7.10126 -5.89997 -3.19812 0.71035 1.12702 1.83668 2.20486 2.32200 3.31973 3.34341 3.41085 3.42113 3.52851 4.46852 4.55183 4.86455 4.92131 4.98919 5.25186 5.35660 5.44006 5.50190 5.56568 5.57967 5.65920 5.73002 5.88983 5.90936 5.99925 6.01273 6.13747 6.22905 6.27649 6.31652 6.38804 6.49029 6.52109 6.56288 6.64799 6.78120 6.87255 7.60775 7.78515 8.27763 8.41069 9.39548 9.94444 10.29288 11.31322 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.005133 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.338798 B = 5453.526350 C = 7722.237669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.180 3.820 11 H 0.055 0.945 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.106 4.106 15 H 0.099 0.901 16 C 0.115 3.885 17 N -0.608 5.608 18 C 0.590 3.410 19 O -0.537 6.537 20 C -0.144 4.144 21 C -0.116 4.116 22 C -0.210 4.210 23 S 0.196 5.804 24 C -0.128 4.128 25 Cl 0.007 6.993 26 C 0.111 3.889 27 C -0.118 4.118 28 H 0.083 0.917 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.192 0.808 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -7.413 7.565 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.069 3.931 11 H 0.073 0.927 12 C -0.170 4.170 13 C -0.151 4.151 14 C -0.125 4.125 15 H 0.117 0.883 16 C -0.007 4.007 17 N -0.342 5.342 18 C 0.378 3.622 19 O -0.416 6.416 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.345 4.345 23 S 0.459 5.541 24 C -0.275 4.275 25 Cl 0.036 6.964 26 C -0.011 4.011 27 C -0.141 4.141 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.208 0.792 38 H 0.196 0.804 39 H 0.113 0.887 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.335 -7.156 8.873 11.635 hybrid contribution 1.214 0.296 -0.835 1.503 sum -1.122 -6.860 8.037 10.626 Atomic orbital electron populations 1.69649 1.04924 1.25750 1.57330 1.24690 0.95450 0.97478 1.02733 0.86282 0.78793 0.84058 0.77598 1.21767 1.21813 1.20772 1.19238 0.91063 0.83908 1.43123 0.91095 1.42584 1.05627 0.99742 1.87946 1.20829 0.95051 0.86219 0.91032 0.92680 1.22583 1.01078 0.95845 0.97451 1.22196 0.98114 0.98521 0.96226 1.23219 0.98603 0.97216 0.93472 0.88294 1.22143 0.93259 0.89611 0.95737 1.48358 1.31636 1.14271 1.39889 1.17033 0.78971 0.87322 0.78897 1.90801 1.65487 1.33365 1.51916 1.20291 1.00719 0.95926 0.99472 1.22413 1.01411 0.89316 1.01142 1.25663 1.02059 1.04880 1.01931 1.83000 1.40225 0.96334 1.34540 1.25155 1.03744 0.97486 1.01075 1.98378 1.88127 1.45682 1.64220 1.22500 0.98777 0.87412 0.92390 1.23598 0.97700 0.93212 0.99556 0.89824 0.93433 0.78126 0.91990 0.91507 0.92256 0.91659 0.91900 0.90680 0.79191 0.80353 0.88691 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.74 13.06 55.49 0.72 -24.02 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.24 -5.87 9.95 -15.06 -0.15 -6.02 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.72 -15.33 3.68 -52.09 -0.19 -15.52 16 10 C 0.18 3.08 3.26 -66.55 -0.22 2.86 16 11 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 12 C -0.13 -1.95 6.63 -25.24 -0.17 -2.12 16 13 C -0.11 -1.51 5.90 -25.39 -0.15 -1.66 16 14 C -0.11 -1.35 4.22 -87.12 -0.37 -1.72 16 15 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.12 1.60 6.23 -2.58 -0.02 1.58 16 17 N -0.61 -9.83 2.88 -172.13 -0.50 -10.32 16 18 C 0.59 10.59 7.81 -12.69 -0.10 10.49 16 19 O -0.54 -10.58 15.15 5.23 0.08 -10.50 16 20 C -0.14 -2.45 5.97 -104.59 -0.62 -3.07 16 21 C -0.12 -1.91 8.86 -39.01 -0.35 -2.26 16 22 C -0.21 -3.10 11.11 28.84 0.32 -2.78 16 23 S 0.20 2.52 23.02 -107.50 -2.47 0.05 16 24 C -0.13 -2.00 6.87 30.01 0.21 -1.79 16 25 Cl 0.01 0.11 27.22 -51.86 -1.41 -1.30 16 26 C 0.11 1.83 3.46 -3.18 -0.01 1.82 16 27 C -0.12 -1.80 3.93 -87.84 -0.35 -2.15 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.38 8.85 6.83 -40.82 -0.28 8.57 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.10 7.74 -51.93 -0.40 0.69 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.99 7.39 -51.92 -0.38 0.61 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 37 H 0.19 3.43 3.79 -52.49 -0.20 3.23 16 38 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.10 1.76 4.73 -51.93 -0.25 1.51 16 40 H 0.07 1.19 6.76 -51.93 -0.35 0.84 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -27.26 343.77 -10.45 -37.71 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.77 Total: 10.32 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.06 Total: -7.09 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.04 Total: -49.87 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.47 Total: 0.05 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.41 Total: -1.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.26 -10.45 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds