Wall clock time and date at job start Sat Apr 11 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46848 * 269.99330 * 3 2 1 5 5 H 1.48495 * 109.47285 * 29.99381 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99885 * 3 2 1 7 7 C 1.38814 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99993 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.05614 * 328.16401 * 10 9 7 12 12 C 1.54725 * 111.52974 * 207.33454 * 10 9 7 13 13 C 1.54107 * 106.75925 * 242.34016 * 12 10 9 14 14 C 1.54452 * 104.73533 * 335.69429 * 13 12 10 15 15 H 1.08993 * 113.73860 * 272.41302 * 14 13 12 16 16 C 1.54892 * 109.70717 * 143.79711 * 14 13 12 17 17 N 1.47350 * 105.01573 * 288.54196 * 16 14 13 18 18 C 1.34772 * 125.70595 * 155.08866 * 17 16 14 19 19 O 1.21654 * 119.99788 * 354.04418 * 18 17 16 20 20 C 1.47046 * 120.00310 * 173.77198 * 18 17 16 21 21 C 1.44500 * 123.49233 * 5.74941 * 20 18 17 22 22 C 1.32691 * 113.10218 * 179.83912 * 21 20 18 23 23 S 1.75495 * 110.62708 * 0.41340 * 22 21 20 24 24 C 1.36227 * 123.49089 * 186.04568 * 20 18 17 25 25 Cl 1.73603 * 124.60594 * 359.97438 * 24 20 18 26 26 C 1.47035 * 108.59337 * 334.82847 * 17 16 14 27 27 C 1.53909 * 109.91152 * 89.35728 * 10 9 7 28 28 H 1.09004 * 112.92105 * 265.08908 * 27 10 9 29 29 H 0.97000 * 120.00458 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00094 * 359.97438 * 9 7 2 31 31 H 1.09004 * 110.72454 * 122.59436 * 12 10 9 32 32 H 1.09000 * 109.25991 * 1.28382 * 12 10 9 33 33 H 1.08995 * 110.38569 * 216.87708 * 13 12 10 34 34 H 1.09008 * 110.47914 * 94.55758 * 13 12 10 35 35 H 1.09003 * 110.44654 * 169.62750 * 16 14 13 36 36 H 1.09001 * 110.28858 * 47.38184 * 16 14 13 37 37 H 1.08002 * 123.44956 * 0.03929 * 21 20 18 38 38 H 1.07997 * 124.68636 * 180.13732 * 22 21 20 39 39 H 1.09001 * 109.82831 * 122.04743 * 26 17 16 40 40 H 1.09002 * 109.82657 * 242.91718 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9984 -3.5456 -0.5396 12 6 1.2349 -4.7879 -0.6604 13 6 0.9907 -5.8530 0.4263 14 6 2.1406 -5.6529 1.4379 15 1 3.0430 -6.2127 1.1927 16 6 1.6218 -5.9063 2.8752 17 7 0.7559 -4.7530 3.1774 18 6 -0.2567 -4.7413 4.0667 19 8 -0.5905 -5.7710 4.6219 20 6 -0.9541 -3.4829 4.3704 21 6 -0.6988 -2.2419 3.6755 22 6 -1.4460 -1.2367 4.1135 23 16 -2.4957 -1.7682 5.4156 24 6 -1.9036 -3.3647 5.3401 25 17 -2.4377 -4.6637 6.3605 26 6 1.1853 -3.6151 2.3511 27 6 2.3344 -4.1026 1.4475 28 1 3.3169 -3.7956 1.8062 29 1 -0.4851 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 1.7817 -5.2255 -1.4956 32 1 0.2838 -4.3843 -1.0078 33 1 1.0344 -6.8528 -0.0054 34 1 0.0272 -5.6907 0.9097 35 1 2.4537 -5.9493 3.5782 36 1 1.0463 -6.8313 2.9117 37 1 0.0238 -2.1435 2.8788 38 1 -1.4097 -0.2294 3.7256 39 1 0.3536 -3.2692 1.7373 40 1 1.5346 -2.8046 2.9908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026368637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:24 Heat of formation + Delta-G solvation = 14.953309 kcal Electronic energy + Delta-G solvation = -25958.464196 eV Core-core repulsion = 22312.113114 eV Total energy + Delta-G solvation = -3646.351082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78988 -39.89506 -38.16074 -37.49728 -36.45611 -34.90030 -32.69838 -30.84524 -30.21627 -30.06050 -27.13416 -26.06969 -25.21047 -24.10104 -21.83119 -20.84754 -20.43566 -20.19013 -19.30061 -19.06270 -17.50751 -17.08413 -16.83958 -16.58020 -16.11783 -15.66075 -15.13860 -15.04007 -14.86261 -14.74229 -14.56036 -14.34153 -14.14497 -13.86722 -13.45791 -13.30129 -12.98143 -12.86313 -12.63344 -12.45520 -12.35337 -12.16481 -12.06101 -11.94785 -11.79463 -11.52937 -11.47137 -11.41699 -11.19539 -10.93862 -10.75730 -9.96369 -9.62809 -9.45964 -8.89066 -7.83626 -5.10903 -0.52948 -0.03338 0.64410 0.91656 1.12816 1.52229 1.55375 1.60571 2.06346 2.18737 2.62740 3.33849 3.47948 3.65641 3.68175 3.82522 3.99829 4.12204 4.20989 4.31575 4.36668 4.46395 4.48561 4.65567 4.74077 4.76741 4.82219 4.87610 5.00604 5.05416 5.09278 5.10368 5.18854 5.27194 5.34314 5.41869 5.53976 5.59110 5.67223 6.37512 6.45055 7.06940 7.45031 8.18359 8.42323 9.38204 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.005133 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.338798 B = 5453.526350 C = 7722.237669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.059 4.059 3 Si 0.953 3.047 4 H -0.297 1.297 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.231 4.231 8 H 0.074 0.926 9 N -0.725 5.725 10 C 0.173 3.827 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.107 4.107 14 C -0.086 4.086 15 H 0.135 0.865 16 C 0.110 3.890 17 N -0.606 5.606 18 C 0.582 3.418 19 O -0.561 6.561 20 C -0.167 4.167 21 C -0.130 4.130 22 C -0.219 4.219 23 S 0.283 5.717 24 C -0.144 4.144 25 Cl 0.010 6.990 26 C 0.123 3.877 27 C -0.116 4.116 28 H 0.091 0.909 29 H 0.249 0.751 30 H 0.373 0.627 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.073 0.927 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -8.273 7.978 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.252 4.252 3 Si 0.785 3.215 4 H -0.225 1.225 5 H -0.226 1.226 6 H -0.199 1.199 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.365 5.365 10 C 0.064 3.936 11 H 0.074 0.926 12 C -0.162 4.162 13 C -0.145 4.145 14 C -0.105 4.105 15 H 0.153 0.847 16 C -0.011 4.011 17 N -0.338 5.338 18 C 0.371 3.629 19 O -0.442 6.442 20 C -0.187 4.187 21 C -0.158 4.158 22 C -0.354 4.354 23 S 0.547 5.453 24 C -0.291 4.291 25 Cl 0.038 6.962 26 C 0.001 3.999 27 C -0.138 4.138 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.188 0.812 38 H 0.203 0.797 39 H 0.091 0.909 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.364 -8.048 9.280 12.359 hybrid contribution 0.901 0.548 -0.946 1.416 sum -0.464 -7.500 8.335 11.222 Atomic orbital electron populations 1.69775 1.05976 1.25583 1.59461 1.25240 0.96041 0.99861 1.04100 0.85447 0.78006 0.81179 0.76917 1.22455 1.22617 1.19869 1.19516 0.91284 0.84913 1.40624 0.90781 1.42684 1.05188 1.00626 1.87961 1.21059 0.94915 0.85268 0.92396 0.92642 1.22509 0.99861 0.95411 0.98424 1.22148 0.97234 0.99347 0.95749 1.23256 0.99534 0.95247 0.92474 0.84714 1.22344 0.93280 0.88731 0.96790 1.48405 1.31388 1.14876 1.39181 1.17272 0.79244 0.87443 0.78951 1.90769 1.66364 1.34093 1.53018 1.20284 1.01966 0.95751 1.00699 1.22187 1.02152 0.89986 1.01444 1.25869 1.02104 1.04856 1.02590 1.82673 1.37520 0.93345 1.31800 1.25506 1.03691 0.99104 1.00825 1.98374 1.87943 1.45948 1.63889 1.22255 0.98352 0.87275 0.91990 1.23508 0.97321 0.95322 0.97618 0.89108 0.94229 0.79419 0.89802 0.93610 0.89534 0.94007 0.90447 0.90685 0.81183 0.79731 0.90915 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.30 13.06 21.65 0.28 -52.02 16 2 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 3 Si 0.95 42.54 29.55 68.60 2.03 44.56 16 4 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.23 -11.25 9.95 84.03 0.84 -10.42 16 8 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 9 N -0.72 -31.32 3.68 -318.70 -1.17 -32.50 16 10 C 0.17 5.76 3.26 45.89 0.15 5.90 16 11 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 12 C -0.12 -3.50 6.63 31.56 0.21 -3.29 16 13 C -0.11 -2.65 5.90 31.46 0.19 -2.46 16 14 C -0.09 -1.96 4.22 -8.53 -0.04 -1.99 16 15 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 16 C 0.11 2.87 6.23 86.86 0.54 3.41 16 17 N -0.61 -19.56 2.88 -816.72 -2.35 -21.92 16 18 C 0.58 21.14 7.81 86.55 0.68 21.82 16 19 O -0.56 -22.20 15.15 -4.20 -0.06 -22.26 16 20 C -0.17 -5.74 5.97 -19.84 -0.12 -5.86 16 21 C -0.13 -4.44 8.86 22.70 0.20 -4.24 16 22 C -0.22 -6.43 11.11 66.65 0.74 -5.69 16 23 S 0.28 6.85 23.02 -56.49 -1.30 5.55 16 24 C -0.14 -4.43 6.87 67.35 0.46 -3.96 16 25 Cl 0.01 0.29 27.22 -2.72 -0.07 0.21 16 26 C 0.12 4.12 3.46 86.65 0.30 4.42 16 27 C -0.12 -3.37 3.93 -8.99 -0.04 -3.40 16 28 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 30 H 0.37 17.78 6.83 -92.71 -0.63 17.14 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.50 7.74 -2.39 -0.02 1.48 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.24 7.39 -2.38 -0.02 1.22 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 37 H 0.17 6.50 3.79 -2.91 -0.01 6.49 16 38 H 0.19 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.07 2.81 4.73 -2.39 -0.01 2.80 16 40 H 0.05 1.96 6.76 -2.39 -0.02 1.94 16 Total: -1.00 -59.31 343.77 2.38 -56.92 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.46 Total: 29.78 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.58 Total: -8.34 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.24 Total: -106.43 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.30 Total: 5.55 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.07 Total: 0.21 kcal Total: -59.31 2.38 -56.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.878 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds