Wall clock time and date at job start Sat Apr 11 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00075 * 2 1 4 4 H 1.48496 * 109.46933 * 269.99901 * 3 2 1 5 5 H 1.48503 * 109.47008 * 30.00156 * 3 2 1 6 6 H 1.48501 * 109.46705 * 150.00025 * 3 2 1 7 7 C 1.38809 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99834 * 179.97438 * 9 7 2 11 11 H 1.08990 * 110.47604 * 32.33471 * 10 9 7 12 12 C 1.55057 * 110.53168 * 269.51531 * 10 9 7 13 13 C 1.55061 * 102.10595 * 201.32830 * 12 10 9 14 14 C 1.54324 * 103.93322 * 40.06313 * 13 12 10 15 15 H 1.08998 * 112.36203 * 97.60766 * 14 13 12 16 16 C 1.55744 * 109.23930 * 223.03244 * 14 13 12 17 17 N 1.47210 * 106.44330 * 132.61880 * 16 14 13 18 18 C 1.34782 * 126.70090 * 148.32424 * 17 16 14 19 19 O 1.21651 * 119.99760 * 353.24200 * 18 17 16 20 20 C 1.47039 * 119.99870 * 173.24205 * 18 17 16 21 21 C 1.44503 * 123.49341 * 351.30598 * 20 18 17 22 22 C 1.32696 * 113.10064 * 179.97438 * 21 20 18 23 23 S 1.75495 * 110.62736 * 0.02562 * 22 21 20 24 24 C 1.36225 * 123.48941 * 171.01904 * 20 18 17 25 25 Cl 1.73594 * 124.60568 * 0.02798 * 24 20 18 26 26 C 1.47213 * 106.59801 * 328.30615 * 17 16 14 27 27 C 1.53779 * 106.38005 * 31.27967 * 26 17 16 28 28 H 1.09004 * 111.70758 * 103.62141 * 27 26 17 29 29 H 0.97003 * 119.99712 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00162 * 0.02562 * 9 7 2 31 31 H 1.08991 * 110.90790 * 319.53614 * 12 10 9 32 32 H 1.09004 * 110.90209 * 83.13502 * 12 10 9 33 33 H 1.08996 * 110.53917 * 281.44508 * 13 12 10 34 34 H 1.09002 * 110.65414 * 158.73025 * 13 12 10 35 35 H 1.09004 * 110.38775 * 13.18457 * 16 14 13 36 36 H 1.08994 * 109.69669 * 251.68537 * 16 14 13 37 37 H 1.07998 * 123.45340 * 359.95309 * 21 20 18 38 38 H 1.07992 * 124.68935 * 180.02562 * 22 21 20 39 39 H 1.08992 * 110.07623 * 272.04493 * 26 17 16 40 40 H 1.09002 * 110.11965 * 150.53105 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9962 -3.5559 0.5438 12 6 2.3181 -4.1333 -1.4541 13 6 2.5605 -5.6524 -1.2595 14 6 1.5174 -6.0622 -0.1986 15 1 0.6219 -6.4962 -0.6433 16 6 2.1858 -7.0139 0.8374 17 7 1.8049 -6.5141 2.1687 18 6 1.6177 -7.2501 3.2822 19 8 1.6427 -8.4647 3.2197 20 6 1.3832 -6.5849 4.5723 21 6 1.5168 -5.1598 4.7706 22 6 1.2564 -4.7806 6.0153 23 16 0.8331 -6.1649 7.0075 24 6 1.0120 -7.2475 5.7032 25 17 0.7596 -8.9621 5.8033 26 6 1.6690 -5.0534 2.0464 27 6 1.1948 -4.7808 0.6092 28 1 0.1328 -4.5373 0.5743 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.4463 -3.9560 -2.0837 32 1 3.2016 -3.6488 -1.8700 33 1 3.5706 -5.8347 -0.8930 34 1 2.3899 -6.1915 -2.1915 35 1 3.2700 -6.9945 0.7266 36 1 1.8131 -8.0286 0.6980 37 1 1.8001 -4.4735 3.9863 38 1 1.2990 -3.7611 6.3689 39 1 2.6313 -4.5721 2.2205 40 1 0.9320 -4.6844 2.7598 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:31 Heat of formation + Delta-G solvation = 21.348930 kcal Electronic energy + Delta-G solvation = -24995.756341 eV Core-core repulsion = 21349.682594 eV Total energy + Delta-G solvation = -3646.073748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.52357 -38.74246 -37.17893 -36.58877 -35.18019 -33.45861 -31.10402 -29.93053 -29.29510 -28.74200 -25.67864 -24.86112 -23.40127 -22.87530 -20.86947 -20.28834 -19.33989 -19.11152 -18.23932 -17.20854 -16.47443 -15.99812 -15.70938 -15.25113 -14.66919 -14.39474 -14.17719 -14.05540 -13.76231 -13.60449 -13.32097 -13.02832 -12.93137 -12.55486 -12.23524 -11.97953 -11.72366 -11.67775 -11.47465 -11.17767 -11.09859 -10.83541 -10.79055 -10.60836 -10.37309 -10.25934 -10.25742 -10.01396 -9.80905 -9.67835 -9.06831 -8.93679 -8.80148 -8.56437 -7.01549 -5.83381 -3.12335 0.38125 0.80062 1.48466 1.77748 2.01634 3.04460 3.23006 3.38593 3.44352 3.45690 4.37875 4.52318 4.63576 4.66704 4.85411 4.92103 5.02333 5.25555 5.35759 5.43212 5.47331 5.54058 5.64076 5.66808 5.77410 5.82749 5.87995 5.94554 5.96609 6.03776 6.08941 6.21112 6.30626 6.39808 6.47809 6.63056 6.75110 6.98547 7.53918 7.64369 8.14864 8.35027 9.46523 10.03498 10.37684 11.38954 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.003335 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.733282 B = 8394.116768 C =10222.833443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.058 0.942 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.097 4.097 15 H 0.087 0.913 16 C 0.112 3.888 17 N -0.609 5.609 18 C 0.592 3.408 19 O -0.530 6.530 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.221 4.221 23 S 0.215 5.785 24 C -0.125 4.125 25 Cl 0.015 6.985 26 C 0.097 3.903 27 C -0.109 4.109 28 H 0.090 0.910 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.077 0.923 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -14.029 10.585 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.154 4.154 14 C -0.117 4.117 15 H 0.105 0.895 16 C -0.010 4.010 17 N -0.342 5.342 18 C 0.380 3.620 19 O -0.408 6.408 20 C -0.165 4.165 21 C -0.145 4.145 22 C -0.357 4.357 23 S 0.479 5.521 24 C -0.272 4.272 25 Cl 0.044 6.956 26 C -0.026 4.026 27 C -0.129 4.129 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.194 0.806 38 H 0.197 0.803 39 H 0.095 0.905 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.263 -14.890 12.203 19.384 hybrid contribution 0.455 1.106 -1.603 2.000 sum 2.718 -13.783 10.600 17.599 Atomic orbital electron populations 1.69655 1.05097 1.25710 1.57498 1.24724 0.95464 0.97645 1.02880 0.86238 0.78681 0.83977 0.77567 1.21737 1.21805 1.20751 1.19227 0.90974 0.84081 1.42920 0.91184 1.42451 1.05702 0.99680 1.88193 1.21251 0.93671 0.85084 0.92717 0.92370 1.23296 1.01462 0.92922 1.00688 1.22465 0.97696 0.97701 0.97575 1.22909 0.98700 0.94909 0.95196 0.89504 1.22551 0.99111 0.98656 0.80718 1.48357 1.68114 1.08657 1.09085 1.17007 0.77083 0.85939 0.82003 1.90828 1.51497 1.12722 1.85732 1.20242 1.08537 0.93501 0.94224 1.21988 1.00872 0.93453 0.98164 1.25643 1.09476 1.03131 0.97415 1.83148 1.65537 0.94288 1.09127 1.25238 1.09067 0.92856 1.00059 1.98401 1.94395 1.05081 1.97738 1.22772 1.01692 0.79621 0.98477 1.22948 1.01583 0.95658 0.92738 0.89210 0.93478 0.78176 0.91544 0.92119 0.91655 0.92154 0.91114 0.90577 0.80571 0.80345 0.90520 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -6.21 9.96 -15.06 -0.15 -6.36 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.39 5.21 -51.71 -0.27 -16.66 16 10 C 0.18 3.22 3.03 -66.15 -0.20 3.02 16 11 H 0.06 1.03 7.14 -51.93 -0.37 0.66 16 12 C -0.14 -2.29 6.60 -24.55 -0.16 -2.45 16 13 C -0.12 -1.45 6.37 -24.95 -0.16 -1.61 16 14 C -0.10 -1.24 4.01 -87.47 -0.35 -1.59 16 15 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.11 1.44 6.62 -2.19 -0.01 1.42 16 17 N -0.61 -8.52 3.32 -171.75 -0.57 -9.09 16 18 C 0.59 9.12 7.82 -12.69 -0.10 9.02 16 19 O -0.53 -9.37 15.18 5.23 0.08 -9.29 16 20 C -0.15 -1.97 5.92 -104.59 -0.62 -2.59 16 21 C -0.12 -1.35 8.64 -39.00 -0.34 -1.68 16 22 C -0.22 -2.12 11.11 28.84 0.32 -1.80 16 23 S 0.22 2.00 23.02 -107.50 -2.47 -0.47 16 24 C -0.13 -1.57 6.87 30.01 0.21 -1.37 16 25 Cl 0.01 0.19 27.25 -51.86 -1.41 -1.22 16 26 C 0.10 1.31 4.70 -3.25 -0.02 1.29 16 27 C -0.11 -1.60 3.55 -88.53 -0.31 -1.92 16 28 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.38 9.42 7.62 -40.82 -0.31 9.10 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.76 7.22 -51.93 -0.37 0.39 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 36 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 37 H 0.18 1.98 4.47 -52.49 -0.23 1.75 16 38 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.08 1.01 6.80 -51.93 -0.35 0.66 16 40 H 0.09 1.16 5.45 -51.93 -0.28 0.87 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -30.13 346.94 -10.48 -40.61 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.77 Total: 7.61 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.99 Total: -7.01 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.12 Total: -51.80 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.47 Total: -0.47 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.41 Total: -1.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.13 -10.48 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.961 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds