Wall clock time and date at job start Sat Apr 11 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47255 * 269.99821 * 3 2 1 5 5 H 1.48500 * 109.46879 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47030 * 150.00009 * 3 2 1 7 7 C 1.38812 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00412 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00244 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.44478 * 32.44040 * 10 9 7 12 12 C 1.55939 * 110.49500 * 269.73117 * 10 9 7 13 13 C 1.56395 * 105.79376 * 233.79145 * 12 10 9 14 14 C 1.51008 * 101.59279 * 334.98343 * 13 12 10 15 15 H 1.09001 * 110.05570 * 290.62597 * 14 13 12 16 16 C 1.50274 * 125.68799 * 156.23535 * 14 13 12 17 17 N 1.49219 * 104.90037 * 215.88130 * 16 14 13 18 18 C 1.34779 * 126.05754 * 186.92150 * 17 16 14 19 19 O 1.21655 * 119.99514 * 183.47694 * 18 17 16 20 20 C 1.47042 * 120.00205 * 3.47511 * 18 17 16 21 21 C 1.44511 * 123.49303 * 352.98376 * 20 18 17 22 22 C 1.32686 * 113.09977 * 179.97438 * 21 20 18 23 23 S 1.75492 * 110.63194 * 0.02562 * 22 21 20 24 24 C 1.36218 * 123.49333 * 172.98260 * 20 18 17 25 25 Cl 1.73604 * 124.60409 * 0.02562 * 24 20 18 26 26 C 1.49693 * 107.88125 * 6.65924 * 17 16 14 27 27 C 1.50292 * 110.49411 * 154.99759 * 10 9 7 28 28 H 1.09002 * 109.99115 * 39.09519 * 27 10 9 29 29 H 0.96992 * 120.00330 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99742 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.18448 * 352.87624 * 12 10 9 32 32 H 1.09002 * 110.18686 * 114.63477 * 12 10 9 33 33 H 1.08997 * 111.00234 * 93.06107 * 13 12 10 34 34 H 1.08997 * 111.00368 * 216.91171 * 13 12 10 35 35 H 1.08998 * 110.46256 * 96.96358 * 16 14 13 36 36 H 1.09000 * 110.22643 * 334.67819 * 16 14 13 37 37 H 1.07998 * 123.44461 * 0.02562 * 21 20 18 38 38 H 1.08004 * 124.68551 * 180.26076 * 22 21 20 39 39 H 1.08997 * 110.84644 * 143.59569 * 26 17 16 40 40 H 1.09000 * 110.84769 * 267.21077 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9950 -3.5555 0.5484 12 6 2.3252 -4.1331 -1.4601 13 6 1.7641 -5.5906 -1.5419 14 6 1.8378 -6.0256 -0.0977 15 1 2.8784 -6.1446 0.2042 16 6 1.0053 -7.1039 0.5367 17 7 0.7402 -6.6186 1.9226 18 6 0.1396 -7.3171 2.9064 19 8 -0.0781 -6.7900 3.9810 20 6 -0.2527 -8.7162 2.6809 21 6 -0.1657 -9.3716 1.3959 22 6 -0.5729 -10.6340 1.4267 23 16 -1.0858 -11.0789 3.0450 24 6 -0.7358 -9.5289 3.6616 25 17 -0.9642 -9.0507 5.3147 26 6 1.2656 -5.2209 2.0286 27 6 1.2163 -4.7504 0.5956 28 1 0.1803 -4.6394 0.2753 29 1 -0.4850 0.8399 0.0004 30 1 0.3556 -2.3882 0.0005 31 1 1.8028 -3.4887 -2.1672 32 1 3.3953 -4.1285 -1.6675 33 1 0.7342 -5.5933 -1.8986 34 1 2.3956 -6.2176 -2.1713 35 1 1.5556 -8.0444 0.5629 36 1 0.0689 -7.2264 -0.0078 37 1 0.1947 -8.8839 0.5022 38 1 -0.5833 -11.2975 0.5746 39 1 0.6196 -4.6105 2.6596 40 1 2.2894 -5.2186 2.4026 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026368643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:38 Heat of formation + Delta-G solvation = 40.750872 kcal Electronic energy + Delta-G solvation = -24754.494643 eV Core-core repulsion = 21109.262227 eV Total energy + Delta-G solvation = -3645.232416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.73162 -39.00958 -37.21382 -36.65486 -35.34039 -33.39753 -30.96094 -30.11092 -29.62654 -28.55139 -25.93884 -24.72463 -23.43224 -22.84125 -21.00752 -20.20315 -19.63155 -18.91592 -18.30493 -17.13357 -16.75434 -16.00789 -15.52599 -15.13102 -14.87453 -14.45895 -14.20320 -14.04584 -13.93417 -13.72042 -13.37401 -13.20961 -12.86352 -12.71872 -12.15740 -11.89259 -11.82456 -11.63887 -11.55214 -11.31919 -11.14672 -10.92696 -10.79849 -10.77582 -10.46862 -10.16238 -10.12139 -9.85137 -9.73472 -9.55696 -9.17494 -8.92293 -8.90397 -8.58662 -6.98152 -5.77757 -3.07097 0.28922 0.70131 1.36814 1.66307 1.95074 2.90120 3.23510 3.43153 3.48652 3.50347 4.07518 4.37104 4.57195 4.70462 4.72735 4.82274 5.10561 5.19780 5.23152 5.28638 5.38546 5.54484 5.55696 5.56233 5.69722 5.73280 5.83776 5.91123 5.98335 6.01596 6.11908 6.20773 6.31776 6.33413 6.48550 6.61439 6.76532 7.03584 7.49662 7.69625 8.16381 8.40348 9.51711 10.08289 10.42524 11.44634 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002628 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.819426 B =10651.901773 C =11693.207878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.057 0.943 12 C -0.144 4.144 13 C -0.096 4.096 14 C -0.133 4.133 15 H 0.082 0.918 16 C 0.113 3.887 17 N -0.616 5.616 18 C 0.587 3.413 19 O -0.522 6.522 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.227 4.227 23 S 0.215 5.785 24 C -0.125 4.125 25 Cl 0.019 6.981 26 C 0.132 3.868 27 C -0.117 4.117 28 H 0.082 0.918 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.086 0.914 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -26.491 1.064 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.185 4.185 13 C -0.135 4.135 14 C -0.153 4.153 15 H 0.100 0.900 16 C -0.009 4.009 17 N -0.351 5.351 18 C 0.374 3.626 19 O -0.399 6.399 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.362 4.362 23 S 0.479 5.521 24 C -0.272 4.272 25 Cl 0.048 6.952 26 C 0.011 3.989 27 C -0.137 4.137 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.104 0.896 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.740 -27.360 2.541 27.487 hybrid contribution 0.661 2.259 -0.597 2.428 sum -0.079 -25.101 1.944 25.176 Atomic orbital electron populations 1.69655 1.05116 1.25716 1.57481 1.24746 0.95488 0.97712 1.02879 0.86210 0.78699 0.83934 0.77465 1.21757 1.21803 1.20744 1.19242 0.90990 0.84088 1.42897 0.91137 1.42495 1.05706 0.99660 1.88128 1.20084 0.94166 0.85008 0.92223 0.92534 1.23809 0.99988 0.93903 1.00774 1.21739 1.01250 0.97274 0.93206 1.22224 0.99991 0.95220 0.97835 0.89963 1.21653 0.99462 0.97176 0.82573 1.49634 1.58529 1.15759 1.11218 1.17026 0.77955 0.84289 0.83361 1.90869 1.54588 1.70123 1.24352 1.20306 1.07190 0.96018 0.92812 1.22041 1.00923 0.94089 0.97899 1.25587 1.08999 1.00710 1.00934 1.83173 1.61732 1.06410 1.00831 1.25272 1.08024 1.00940 0.92919 1.98419 1.94768 1.91154 1.10813 1.21517 0.99398 0.80408 0.97562 1.22533 1.01745 0.95665 0.93764 0.90010 0.93477 0.78144 0.90739 0.92635 0.91574 0.92129 0.90449 0.90832 0.80762 0.80607 0.89603 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.31 5.10 -53.21 -0.27 -17.58 16 10 C 0.20 3.61 3.41 -67.71 -0.23 3.38 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.27 6.73 -23.34 -0.16 -2.43 16 13 C -0.10 -1.15 6.72 -25.91 -0.17 -1.32 16 14 C -0.13 -1.56 2.76 -90.30 -0.25 -1.81 16 15 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 16 C 0.11 1.18 4.74 -3.89 -0.02 1.16 16 17 N -0.62 -8.61 3.42 -173.01 -0.59 -9.20 16 18 C 0.59 9.07 7.84 -12.69 -0.10 8.97 16 19 O -0.52 -9.82 15.26 5.23 0.08 -9.74 16 20 C -0.14 -1.79 5.97 -104.59 -0.62 -2.41 16 21 C -0.12 -1.07 8.90 -39.00 -0.35 -1.42 16 22 C -0.23 -1.55 11.11 28.84 0.32 -1.23 16 23 S 0.21 1.67 23.02 -107.50 -2.47 -0.81 16 24 C -0.12 -1.46 6.87 30.01 0.21 -1.25 16 25 Cl 0.02 0.25 27.23 -51.86 -1.41 -1.16 16 26 C 0.13 2.06 6.82 -3.31 -0.02 2.03 16 27 C -0.12 -1.81 2.42 -90.34 -0.22 -2.03 16 28 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 9.97 7.69 -40.82 -0.31 9.65 16 31 H 0.07 1.36 7.98 -51.93 -0.41 0.94 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.64 6.42 -51.93 -0.33 0.31 16 36 H 0.07 0.69 7.27 -51.93 -0.38 0.32 16 37 H 0.18 1.25 3.86 -52.49 -0.20 1.04 16 38 H 0.18 0.66 8.06 -52.48 -0.42 0.23 16 39 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -32.09 349.91 -10.53 -42.63 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.97 Total: 6.03 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.86 Total: -5.45 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.14 Total: -53.96 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.47 Total: -0.81 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.41 Total: -1.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.09 -10.53 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.377 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds