Wall clock time and date at job start Sat Apr 11 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47255 * 269.99821 * 3 2 1 5 5 H 1.48500 * 109.46879 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47030 * 150.00009 * 3 2 1 7 7 C 1.38812 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00412 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00244 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.44478 * 32.44040 * 10 9 7 12 12 C 1.55939 * 110.49500 * 269.73117 * 10 9 7 13 13 C 1.56395 * 105.79376 * 233.79145 * 12 10 9 14 14 C 1.51008 * 101.59279 * 334.98343 * 13 12 10 15 15 H 1.09001 * 110.05570 * 290.62597 * 14 13 12 16 16 C 1.50274 * 125.68799 * 156.23535 * 14 13 12 17 17 N 1.49219 * 104.90037 * 215.88130 * 16 14 13 18 18 C 1.34779 * 126.05754 * 186.92150 * 17 16 14 19 19 O 1.21655 * 119.99514 * 183.47694 * 18 17 16 20 20 C 1.47042 * 120.00205 * 3.47511 * 18 17 16 21 21 C 1.44511 * 123.49303 * 352.98376 * 20 18 17 22 22 C 1.32686 * 113.09977 * 179.97438 * 21 20 18 23 23 S 1.75492 * 110.63194 * 0.02562 * 22 21 20 24 24 C 1.36218 * 123.49333 * 172.98260 * 20 18 17 25 25 Cl 1.73604 * 124.60409 * 0.02562 * 24 20 18 26 26 C 1.49693 * 107.88125 * 6.65924 * 17 16 14 27 27 C 1.50292 * 110.49411 * 154.99759 * 10 9 7 28 28 H 1.09002 * 109.99115 * 39.09519 * 27 10 9 29 29 H 0.96992 * 120.00330 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99742 * 359.97438 * 9 7 2 31 31 H 1.08996 * 110.18448 * 352.87624 * 12 10 9 32 32 H 1.09002 * 110.18686 * 114.63477 * 12 10 9 33 33 H 1.08997 * 111.00234 * 93.06107 * 13 12 10 34 34 H 1.08997 * 111.00368 * 216.91171 * 13 12 10 35 35 H 1.08998 * 110.46256 * 96.96358 * 16 14 13 36 36 H 1.09000 * 110.22643 * 334.67819 * 16 14 13 37 37 H 1.07998 * 123.44461 * 0.02562 * 21 20 18 38 38 H 1.08004 * 124.68551 * 180.26076 * 22 21 20 39 39 H 1.08997 * 110.84644 * 143.59569 * 26 17 16 40 40 H 1.09000 * 110.84769 * 267.21077 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9950 -3.5555 0.5484 12 6 2.3252 -4.1331 -1.4601 13 6 1.7641 -5.5906 -1.5419 14 6 1.8378 -6.0256 -0.0977 15 1 2.8784 -6.1446 0.2042 16 6 1.0053 -7.1039 0.5367 17 7 0.7402 -6.6186 1.9226 18 6 0.1396 -7.3171 2.9064 19 8 -0.0781 -6.7900 3.9810 20 6 -0.2527 -8.7162 2.6809 21 6 -0.1657 -9.3716 1.3959 22 6 -0.5729 -10.6340 1.4267 23 16 -1.0858 -11.0789 3.0450 24 6 -0.7358 -9.5289 3.6616 25 17 -0.9642 -9.0507 5.3147 26 6 1.2656 -5.2209 2.0286 27 6 1.2163 -4.7504 0.5956 28 1 0.1803 -4.6394 0.2753 29 1 -0.4850 0.8399 0.0004 30 1 0.3556 -2.3882 0.0005 31 1 1.8028 -3.4887 -2.1672 32 1 3.3953 -4.1285 -1.6675 33 1 0.7342 -5.5933 -1.8986 34 1 2.3956 -6.2176 -2.1713 35 1 1.5556 -8.0444 0.5629 36 1 0.0689 -7.2264 -0.0078 37 1 0.1947 -8.8839 0.5022 38 1 -0.5833 -11.2975 0.5746 39 1 0.6196 -4.6105 2.6596 40 1 2.2894 -5.2186 2.4026 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026368643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:37 Heat of formation + Delta-G solvation = 20.436226 kcal Electronic energy + Delta-G solvation = -24755.375552 eV Core-core repulsion = 21109.262227 eV Total energy + Delta-G solvation = -3646.113325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85001 -40.11346 -38.13759 -37.50070 -36.77671 -35.06912 -32.67990 -31.16871 -30.61206 -29.77911 -27.33148 -25.84910 -24.93819 -24.13363 -21.92196 -21.32379 -20.69978 -20.05982 -19.18749 -19.02029 -17.85673 -17.09033 -16.65735 -16.56812 -16.11336 -15.69875 -15.38373 -15.30938 -14.92048 -14.79819 -14.48395 -14.36348 -14.10341 -13.92801 -13.40228 -13.16636 -13.11194 -12.95171 -12.63213 -12.59667 -12.46352 -12.33021 -12.13797 -12.03565 -11.84832 -11.74426 -11.56120 -11.32074 -10.99358 -10.95621 -10.79306 -9.98671 -9.69213 -9.50867 -8.97987 -7.93261 -5.21125 -0.50567 0.00741 0.69629 0.94139 1.18601 1.46774 1.48321 1.56442 1.83187 2.19244 2.56852 2.96727 3.41029 3.54114 3.70065 3.86346 3.96555 4.05822 4.16120 4.25673 4.28599 4.42493 4.53231 4.56534 4.60845 4.68117 4.76602 4.77776 4.92221 4.96460 4.98669 5.06439 5.16418 5.18839 5.26448 5.39306 5.49624 5.55326 5.66148 6.29170 6.41880 7.03769 7.34718 8.12259 8.33640 9.30391 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002628 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.819426 B =10651.901773 C =11693.207878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.735 5.735 10 C 0.186 3.814 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.082 4.082 14 C -0.108 4.108 15 H 0.093 0.907 16 C 0.112 3.888 17 N -0.615 5.615 18 C 0.576 3.424 19 O -0.572 6.572 20 C -0.164 4.164 21 C -0.132 4.132 22 C -0.205 4.205 23 S 0.270 5.730 24 C -0.156 4.156 25 Cl -0.007 7.007 26 C 0.133 3.867 27 C -0.121 4.121 28 H 0.064 0.936 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.195 0.805 38 H 0.219 0.781 39 H 0.047 0.953 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -30.196 -1.245 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.374 5.374 10 C 0.077 3.923 11 H 0.068 0.932 12 C -0.179 4.179 13 C -0.120 4.120 14 C -0.127 4.127 15 H 0.112 0.888 16 C -0.008 4.008 17 N -0.349 5.349 18 C 0.365 3.635 19 O -0.453 6.453 20 C -0.184 4.184 21 C -0.159 4.159 22 C -0.340 4.340 23 S 0.534 5.466 24 C -0.302 4.302 25 Cl 0.022 6.978 26 C 0.011 3.989 27 C -0.141 4.141 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.212 0.788 38 H 0.235 0.765 39 H 0.066 0.934 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.659 -31.136 0.190 31.143 hybrid contribution 0.261 3.276 0.124 3.288 sum 0.920 -27.860 0.314 27.877 Atomic orbital electron populations 1.69818 1.06648 1.25855 1.59967 1.25534 0.96298 1.01051 1.04187 0.85192 0.77705 0.79797 0.77420 1.21290 1.22696 1.19448 1.19642 0.91427 0.85259 1.40316 0.90498 1.42714 1.05255 1.01054 1.88385 1.20388 0.93750 0.83671 0.94473 0.93180 1.23598 1.00758 0.96237 0.97268 1.21659 1.01987 0.94594 0.93716 1.22200 1.00546 0.92859 0.97092 0.88828 1.21951 1.00690 0.97880 0.80230 1.49656 1.57929 1.14703 1.12631 1.17644 0.77370 0.85640 0.82821 1.90832 1.56647 1.71467 1.26389 1.20314 1.08715 0.94417 0.94972 1.22089 1.02345 0.94723 0.96772 1.26116 1.06065 1.00349 1.01473 1.83050 1.59732 1.02976 1.00841 1.25687 1.09263 1.03330 0.91952 1.98402 1.94982 1.91717 1.12748 1.21327 0.98835 0.81607 0.97088 1.22273 1.00505 0.97128 0.94227 0.91803 0.94229 0.79787 0.93572 0.91274 0.91300 0.88367 0.86719 0.88995 0.78847 0.76464 0.93398 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 3 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.23 -12.93 9.96 84.03 0.84 -12.10 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -36.60 5.10 -322.26 -1.64 -38.24 16 10 C 0.19 6.89 3.41 45.14 0.15 7.04 16 11 H 0.05 1.90 8.09 -2.38 -0.02 1.88 16 12 C -0.14 -4.15 6.73 32.79 0.22 -3.93 16 13 C -0.08 -1.63 6.72 31.13 0.21 -1.42 16 14 C -0.11 -2.17 2.76 -10.59 -0.03 -2.20 16 15 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 16 C 0.11 1.94 4.74 84.97 0.40 2.35 16 17 N -0.62 -16.82 3.42 -819.51 -2.81 -19.63 16 18 C 0.58 18.01 7.84 86.55 0.68 18.69 16 19 O -0.57 -22.82 15.26 -4.20 -0.06 -22.89 16 20 C -0.16 -3.83 5.97 -19.84 -0.12 -3.95 16 21 C -0.13 -1.79 8.90 22.70 0.20 -1.59 16 22 C -0.20 -1.74 11.11 66.65 0.74 -1.00 16 23 S 0.27 3.31 23.02 -56.49 -1.30 2.01 16 24 C -0.16 -3.48 6.87 67.35 0.46 -3.01 16 25 Cl -0.01 -0.19 27.23 -2.72 -0.07 -0.27 16 26 C 0.13 4.31 6.82 85.08 0.58 4.89 16 27 C -0.12 -3.77 2.42 -10.61 -0.03 -3.79 16 28 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.37 20.23 7.69 -92.70 -0.71 19.52 16 31 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.25 6.42 -2.39 -0.02 1.24 16 36 H 0.09 1.33 7.27 -2.39 -0.02 1.31 16 37 H 0.20 1.71 3.86 -2.91 -0.01 1.70 16 38 H 0.22 0.06 8.06 -2.91 -0.02 0.03 16 39 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -76.08 349.91 1.58 -74.50 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.37 Total: 20.13 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 4.78 Total: -4.13 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.17 Total: -118.04 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.89 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.30 Total: 2.01 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.27 kcal Total: -76.08 1.58 -74.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026368643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.935 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds